Wall clock time and date at job start Wed Apr 1 2020 04:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46965 * 2 1 4 4 C 1.46500 * 119.99662 * 274.99537 * 3 2 1 5 5 C 1.53000 * 109.47537 * 274.99962 * 4 3 2 6 6 S 1.65604 * 120.00068 * 95.00116 * 3 2 1 7 7 O 1.42095 * 104.27788 * 333.92368 * 6 3 2 8 8 O 1.42103 * 104.27483 * 206.06575 * 6 3 2 9 9 C 1.81405 * 104.44914 * 89.99724 * 6 3 2 10 10 C 1.50697 * 109.47002 * 179.97438 * 9 6 3 11 11 O 1.21281 * 120.00074 * 0.02562 * 10 9 6 12 12 N 1.34774 * 119.99998 * 179.97438 * 10 9 6 13 13 C 1.46497 * 120.00026 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47116 * 185.11777 * 13 12 10 15 15 H 1.08996 * 109.87030 * 305.50853 * 14 13 12 16 16 C 1.54323 * 109.88293 * 66.53013 * 14 13 12 17 17 C 1.55405 * 102.82771 * 141.52059 * 16 14 13 18 18 C 1.54912 * 101.66457 * 324.65766 * 17 16 14 19 19 N 1.47020 * 109.88076 * 184.49991 * 14 13 12 20 20 C 1.36938 * 125.65383 * 61.60313 * 19 14 13 21 21 H 1.08001 * 119.99233 * 14.80857 * 20 19 14 22 22 C 1.38804 * 120.00381 * 194.81295 * 20 19 14 23 23 N 1.31621 * 120.00183 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00344 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47192 * 89.99664 * 24 22 20 26 26 H 1.48494 * 109.47225 * 210.00166 * 24 22 20 27 27 H 1.48503 * 109.46696 * 329.99943 * 24 22 20 28 28 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47100 * 300.00267 * 1 2 3 30 30 H 1.09002 * 109.47137 * 60.00422 * 1 2 3 31 31 H 1.08999 * 109.47100 * 239.99733 * 2 1 3 32 32 H 1.09004 * 109.46552 * 120.00046 * 2 1 3 33 33 H 1.08997 * 109.47215 * 35.00448 * 4 3 2 34 34 H 1.09008 * 109.47068 * 155.00129 * 4 3 2 35 35 H 1.09000 * 109.46477 * 60.00138 * 5 4 3 36 36 H 1.08990 * 109.47516 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.47264 * 300.00455 * 5 4 3 38 38 H 1.08996 * 109.47174 * 300.00119 * 9 6 3 39 39 H 1.09004 * 109.47044 * 60.00101 * 9 6 3 40 40 H 0.97000 * 119.99836 * 0.02562 * 12 10 9 41 41 H 1.09004 * 109.47012 * 305.11220 * 13 12 10 42 42 H 1.08995 * 109.47638 * 65.11596 * 13 12 10 43 43 H 1.09004 * 110.71363 * 259.97321 * 16 14 13 44 44 H 1.09000 * 110.72005 * 23.24563 * 16 14 13 45 45 H 1.08996 * 111.03476 * 206.52836 * 17 16 14 46 46 H 1.08997 * 110.92447 * 82.74413 * 17 16 14 47 47 H 1.09001 * 110.36789 * 278.09078 * 18 17 16 48 48 H 1.09004 * 110.45851 * 155.80688 * 18 17 16 49 49 H 0.97002 * 120.00654 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.5152 1.7839 -1.8918 6 16 2.4122 2.1202 1.4287 7 8 1.6208 1.4497 2.3999 8 8 2.2334 3.5055 1.1675 9 6 4.1697 1.7389 1.6661 10 6 4.6508 2.3655 2.9494 11 8 3.8835 3.0059 3.6365 12 7 5.9334 2.2134 3.3341 13 6 6.4010 2.8221 4.5820 14 6 7.9099 2.6091 4.7193 15 1 8.1433 1.5477 4.6356 16 6 8.6535 3.3984 3.6213 17 6 9.9103 3.9267 4.3672 18 6 9.3412 4.2059 5.7808 19 7 8.3710 3.1214 6.0179 20 6 7.9658 2.6673 7.2446 21 1 7.4432 1.7257 7.3260 22 6 8.2268 3.4170 8.3832 23 7 8.8632 4.5648 8.2839 24 14 7.6735 2.7978 10.0565 25 1 8.7487 1.9685 10.6578 26 1 7.3865 3.9545 10.9423 27 1 6.4453 1.9779 9.8995 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3618 1.8096 -1.9453 34 1 2.0921 3.1802 -1.0757 35 1 3.5812 0.7123 -2.0800 36 1 3.6195 2.3254 -2.8319 37 1 4.3117 2.0828 -1.2104 38 1 4.3035 0.6583 1.7165 39 1 4.7442 2.1375 0.8299 40 1 6.5470 1.7010 2.7848 41 1 6.1847 3.8904 4.5684 42 1 5.8903 2.3587 5.4260 43 1 8.9377 2.7412 2.7994 44 1 8.0429 4.2264 3.2610 45 1 10.2817 4.8427 3.9078 46 1 10.6900 3.1660 4.4032 47 1 8.8411 5.1741 5.8040 48 1 10.1368 4.1726 6.5252 49 1 9.0460 5.0887 9.0796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493139842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:58 Heat of formation + Delta-G solvation = -84.141819 kcal Electronic energy + Delta-G solvation = -29514.541464 eV Core-core repulsion = 25411.656877 eV Total energy + Delta-G solvation = -4102.884586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -39.75716 -37.72874 -37.56248 -37.31029 -35.99668 -34.50191 -32.54755 -32.36576 -31.05918 -29.55574 -29.18747 -28.38741 -24.92214 -24.14914 -23.83209 -22.56190 -20.86867 -20.22367 -19.65034 -18.94602 -18.16691 -17.34410 -16.92544 -16.75039 -16.47072 -15.82168 -15.64160 -14.92620 -14.77706 -14.53171 -14.30202 -14.20936 -13.96946 -13.81412 -13.53731 -13.45564 -13.20172 -12.72705 -12.51685 -12.20334 -12.16721 -12.14953 -12.12536 -12.02616 -11.94164 -11.81539 -11.40915 -11.38585 -11.30569 -11.07216 -10.97944 -10.80666 -10.35621 -10.28860 -10.11043 -9.96026 -9.87450 -9.75112 -9.50962 -8.88398 -8.62060 -6.89077 -5.80597 -3.17928 -0.06492 2.39384 2.44379 3.07294 3.38539 3.45040 3.46706 3.71839 3.90623 4.18329 4.40421 4.49240 4.53208 4.66542 4.72374 4.82580 4.93463 4.94987 5.02345 5.14277 5.26439 5.32954 5.33628 5.42467 5.45723 5.52832 5.56514 5.71101 5.74292 5.80675 5.94587 5.96219 6.04070 6.16600 6.21628 6.38326 6.44191 6.47758 6.60468 6.70667 6.95405 7.43499 7.47163 7.57191 7.75317 8.09421 8.21739 9.13125 9.73563 10.40191 11.31285 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002483 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.040021 B =11272.384527 C =12305.784673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -1.003 6.003 4 C 0.106 3.894 5 C -0.178 4.178 6 S 2.640 3.360 7 O -0.935 6.935 8 O -0.938 6.938 9 C -0.676 4.676 10 C 0.534 3.466 11 O -0.537 6.537 12 N -0.706 5.706 13 C 0.102 3.898 14 C 0.152 3.848 15 H 0.038 0.962 16 C -0.128 4.128 17 C -0.148 4.148 18 C 0.171 3.829 19 N -0.587 5.587 20 C -0.237 4.237 21 H 0.076 0.924 22 C 0.000 4.000 23 N -0.914 5.914 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.279 1.279 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 -9.603 -24.352 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.841 5.841 4 C -0.019 4.019 5 C -0.237 4.237 6 S 2.728 3.272 7 O -0.925 6.925 8 O -0.928 6.928 9 C -0.804 4.804 10 C 0.317 3.683 11 O -0.416 6.416 12 N -0.356 5.356 13 C -0.023 4.023 14 C 0.043 3.957 15 H 0.056 0.944 16 C -0.166 4.166 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.366 4.366 21 H 0.094 0.906 22 C -0.197 4.197 23 N -0.560 5.560 24 Si 0.741 3.259 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.204 1.204 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.091 0.909 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.593 -8.560 -23.035 26.380 hybrid contribution 0.723 -0.933 0.298 1.217 sum -8.870 -9.492 -22.737 26.187 Atomic orbital electron populations 1.22206 0.95602 1.02503 1.02988 1.21251 0.95165 0.81140 1.03048 1.57888 1.79377 1.24164 1.22649 1.21415 0.97945 0.97687 0.84901 1.22310 0.97290 1.02571 1.01550 1.04439 0.75893 0.74207 0.72635 1.93589 1.64013 1.75796 1.59084 1.93571 1.84254 1.31107 1.83833 1.31245 1.30668 1.12639 1.05828 1.19127 0.83685 0.80733 0.84791 1.90873 1.54283 1.41348 1.55074 1.46029 1.09796 1.53959 1.25843 1.22477 0.97598 0.98618 0.83622 1.21137 0.89768 0.96674 0.88109 0.94429 1.22672 0.97781 0.99378 0.96744 1.23047 0.96526 0.99724 0.99383 1.21477 0.92442 0.90504 0.90921 1.44497 1.46724 1.40639 0.99303 1.18979 1.33207 1.02108 0.82277 0.90599 1.24931 1.00402 0.96038 0.98356 1.69932 1.44500 1.13495 1.28060 0.86135 0.78460 0.77616 0.83659 1.21494 1.21515 1.20428 0.91430 0.91445 0.92339 0.90325 0.90028 0.89776 0.88556 0.91913 0.90968 0.92690 0.82536 0.82587 0.76659 0.91025 0.90824 0.92367 0.91747 0.92267 0.92286 0.95484 0.90872 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.81 16 2 C 0.12 0.74 5.98 -4.04 -0.02 0.72 16 3 N -1.00 -7.96 2.71 -114.38 -0.31 -8.27 16 4 C 0.11 0.65 6.38 -4.04 -0.03 0.62 16 5 C -0.18 -0.77 10.24 37.16 0.38 -0.39 16 6 S 2.64 32.89 4.51 -107.50 -0.48 32.41 16 7 O -0.93 -14.78 16.75 -57.55 -0.96 -15.74 16 8 O -0.94 -14.81 16.53 -57.55 -0.95 -15.76 16 9 C -0.68 -6.54 6.66 36.00 0.24 -6.30 16 10 C 0.53 8.26 7.85 -10.99 -0.09 8.17 16 11 O -0.54 -11.05 15.86 5.56 0.09 -10.96 16 12 N -0.71 -10.19 5.36 -60.29 -0.32 -10.51 16 13 C 0.10 1.94 5.10 -4.04 -0.02 1.92 16 14 C 0.15 2.91 3.19 -66.95 -0.21 2.69 16 15 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 16 C -0.13 -2.04 6.22 -24.76 -0.15 -2.20 16 17 C -0.15 -2.64 7.09 -24.45 -0.17 -2.81 16 18 C 0.17 4.02 5.42 -2.52 -0.01 4.01 16 19 N -0.59 -14.37 3.13 -162.56 -0.51 -14.88 16 20 C -0.24 -6.45 9.72 -15.06 -0.15 -6.60 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C 0.00 0.01 5.47 -17.43 -0.10 -0.09 16 23 N -0.91 -26.51 10.58 55.49 0.59 -25.92 16 24 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 32 H 0.08 0.49 7.61 -51.93 -0.40 0.09 16 33 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.10 0.71 6.82 -51.92 -0.35 0.36 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.05 0.23 6.96 -51.93 -0.36 -0.13 16 38 H 0.16 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.16 0.96 6.96 -51.92 -0.36 0.59 16 40 H 0.40 4.20 8.39 -40.82 -0.34 3.85 16 41 H 0.07 1.52 8.03 -51.93 -0.42 1.11 16 42 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.03 7.78 -51.93 -0.40 0.62 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 48 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 49 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -37.13 404.76 -10.17 -47.30 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.43 Total: 0.21 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.05 Total: -1.06 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.55 Total: -59.58 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.83 Total: -42.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 32.89 SS G_CDS: -0.48 Total: 32.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.13 -10.17 -47.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493139842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.843 kcal (2) G-P(sol) polarization free energy of solvation -37.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds