Wall clock time and date at job start Wed Apr 1 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46965 * 2 1 4 4 C 1.46500 * 119.99662 * 274.99537 * 3 2 1 5 5 C 1.53000 * 109.47537 * 274.99962 * 4 3 2 6 6 S 1.65604 * 120.00068 * 95.00116 * 3 2 1 7 7 O 1.42095 * 104.27788 * 333.92368 * 6 3 2 8 8 O 1.42103 * 104.27483 * 206.06575 * 6 3 2 9 9 C 1.81405 * 104.44914 * 89.99724 * 6 3 2 10 10 C 1.50697 * 109.47002 * 179.97438 * 9 6 3 11 11 O 1.21281 * 120.00074 * 0.02562 * 10 9 6 12 12 N 1.34774 * 119.99998 * 179.97438 * 10 9 6 13 13 C 1.46497 * 120.00026 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47116 * 185.11777 * 13 12 10 15 15 H 1.08996 * 109.87030 * 305.50853 * 14 13 12 16 16 C 1.54323 * 109.88293 * 66.53013 * 14 13 12 17 17 C 1.55405 * 102.82771 * 141.52059 * 16 14 13 18 18 C 1.54912 * 101.66457 * 324.65766 * 17 16 14 19 19 N 1.47020 * 109.88076 * 184.49991 * 14 13 12 20 20 C 1.36938 * 125.65383 * 61.60313 * 19 14 13 21 21 H 1.08001 * 119.99233 * 14.80857 * 20 19 14 22 22 C 1.38804 * 120.00381 * 194.81295 * 20 19 14 23 23 N 1.31621 * 120.00183 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00344 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47192 * 89.99664 * 24 22 20 26 26 H 1.48494 * 109.47225 * 210.00166 * 24 22 20 27 27 H 1.48503 * 109.46696 * 329.99943 * 24 22 20 28 28 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47100 * 300.00267 * 1 2 3 30 30 H 1.09002 * 109.47137 * 60.00422 * 1 2 3 31 31 H 1.08999 * 109.47100 * 239.99733 * 2 1 3 32 32 H 1.09004 * 109.46552 * 120.00046 * 2 1 3 33 33 H 1.08997 * 109.47215 * 35.00448 * 4 3 2 34 34 H 1.09008 * 109.47068 * 155.00129 * 4 3 2 35 35 H 1.09000 * 109.46477 * 60.00138 * 5 4 3 36 36 H 1.08990 * 109.47516 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.47264 * 300.00455 * 5 4 3 38 38 H 1.08996 * 109.47174 * 300.00119 * 9 6 3 39 39 H 1.09004 * 109.47044 * 60.00101 * 9 6 3 40 40 H 0.97000 * 119.99836 * 0.02562 * 12 10 9 41 41 H 1.09004 * 109.47012 * 305.11220 * 13 12 10 42 42 H 1.08995 * 109.47638 * 65.11596 * 13 12 10 43 43 H 1.09004 * 110.71363 * 259.97321 * 16 14 13 44 44 H 1.09000 * 110.72005 * 23.24563 * 16 14 13 45 45 H 1.08996 * 111.03476 * 206.52836 * 17 16 14 46 46 H 1.08997 * 110.92447 * 82.74413 * 17 16 14 47 47 H 1.09001 * 110.36789 * 278.09078 * 18 17 16 48 48 H 1.09004 * 110.45851 * 155.80688 * 18 17 16 49 49 H 0.97002 * 120.00654 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.5152 1.7839 -1.8918 6 16 2.4122 2.1202 1.4287 7 8 1.6208 1.4497 2.3999 8 8 2.2334 3.5055 1.1675 9 6 4.1697 1.7389 1.6661 10 6 4.6508 2.3655 2.9494 11 8 3.8835 3.0059 3.6365 12 7 5.9334 2.2134 3.3341 13 6 6.4010 2.8221 4.5820 14 6 7.9099 2.6091 4.7193 15 1 8.1433 1.5477 4.6356 16 6 8.6535 3.3984 3.6213 17 6 9.9103 3.9267 4.3672 18 6 9.3412 4.2059 5.7808 19 7 8.3710 3.1214 6.0179 20 6 7.9658 2.6673 7.2446 21 1 7.4432 1.7257 7.3260 22 6 8.2268 3.4170 8.3832 23 7 8.8632 4.5648 8.2839 24 14 7.6735 2.7978 10.0565 25 1 8.7487 1.9685 10.6578 26 1 7.3865 3.9545 10.9423 27 1 6.4453 1.9779 9.8995 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3618 1.8096 -1.9453 34 1 2.0921 3.1802 -1.0757 35 1 3.5812 0.7123 -2.0800 36 1 3.6195 2.3254 -2.8319 37 1 4.3117 2.0828 -1.2104 38 1 4.3035 0.6583 1.7165 39 1 4.7442 2.1375 0.8299 40 1 6.5470 1.7010 2.7848 41 1 6.1847 3.8904 4.5684 42 1 5.8903 2.3587 5.4260 43 1 8.9377 2.7412 2.7994 44 1 8.0429 4.2264 3.2610 45 1 10.2817 4.8427 3.9078 46 1 10.6900 3.1660 4.4032 47 1 8.8411 5.1741 5.8040 48 1 10.1368 4.1726 6.5252 49 1 9.0460 5.0887 9.0796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493139842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:56 Heat of formation + Delta-G solvation = -113.789994 kcal Electronic energy + Delta-G solvation = -29515.827105 eV Core-core repulsion = 25411.656877 eV Total energy + Delta-G solvation = -4104.170228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.09008 -39.33695 -38.35622 -38.11945 -37.04071 -35.98277 -34.45393 -32.81738 -32.20268 -31.30120 -29.87429 -29.67789 -26.72720 -25.54371 -24.56029 -23.16769 -22.22644 -21.78639 -21.22350 -19.80721 -19.17657 -18.73312 -18.14741 -17.79268 -17.65139 -17.07348 -16.78897 -16.52642 -15.90632 -15.82132 -15.68557 -15.06620 -14.93142 -14.77231 -14.72286 -14.29502 -14.05314 -13.86305 -13.69229 -13.67763 -13.40014 -13.24535 -13.19345 -13.02388 -12.95839 -12.90409 -12.67221 -12.65287 -12.58189 -12.22734 -12.05718 -11.93620 -11.81677 -11.77023 -11.61974 -11.52532 -11.45617 -11.40227 -10.70074 -10.28212 -10.08253 -8.88640 -7.91386 -5.29079 -0.97529 1.25259 1.41962 1.45030 1.52746 1.56972 1.96665 2.46536 2.81765 3.05893 3.26821 3.30978 3.72863 3.77838 3.84587 3.91698 3.95985 4.14605 4.25065 4.25657 4.31496 4.40995 4.49771 4.51753 4.53860 4.60558 4.69923 4.73098 4.90219 4.91398 4.98091 5.08630 5.11225 5.12359 5.15539 5.25955 5.35523 5.38243 5.45158 5.47723 5.52342 5.64851 5.70560 5.76946 6.20252 6.25132 6.97824 7.06730 7.73727 8.39028 9.19504 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002483 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.040021 B =11272.384527 C =12305.784673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 N -0.990 5.990 4 C 0.098 3.902 5 C -0.178 4.178 6 S 2.632 3.368 7 O -0.982 6.982 8 O -0.985 6.985 9 C -0.653 4.653 10 C 0.524 3.476 11 O -0.598 6.598 12 N -0.687 5.687 13 C 0.118 3.882 14 C 0.148 3.852 15 H 0.059 0.941 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.171 3.829 19 N -0.611 5.611 20 C -0.241 4.241 21 H 0.078 0.922 22 C -0.060 4.060 23 N -0.945 5.945 24 Si 0.971 3.029 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.205 0.795 39 H 0.203 0.797 40 H 0.425 0.575 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.072 0.928 47 H -0.010 1.010 48 H 0.036 0.964 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.406 -12.541 -28.296 31.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 N -0.830 5.830 4 C -0.026 4.026 5 C -0.237 4.237 6 S 2.724 3.276 7 O -0.972 6.972 8 O -0.975 6.975 9 C -0.783 4.783 10 C 0.309 3.691 11 O -0.480 6.480 12 N -0.339 5.339 13 C -0.008 4.008 14 C 0.040 3.960 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.171 4.171 18 C 0.046 3.954 19 N -0.335 5.335 20 C -0.370 4.370 21 H 0.096 0.904 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.799 3.201 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.199 1.199 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.222 0.778 39 H 0.220 0.780 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.008 0.992 48 H 0.055 0.945 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.465 -11.541 -27.048 30.601 hybrid contribution 0.325 -0.074 1.423 1.462 sum -8.140 -11.615 -25.625 29.288 Atomic orbital electron populations 1.22261 0.96577 1.03270 1.01691 1.21554 0.94501 0.80143 1.05088 1.57534 1.79144 1.24829 1.21494 1.21634 1.00254 0.96566 0.84158 1.22328 0.95660 1.03870 1.01796 1.04150 0.77018 0.73310 0.73085 1.93531 1.66193 1.76172 1.61326 1.93511 1.85472 1.33983 1.84542 1.31090 1.28093 1.15377 1.03751 1.20013 0.83159 0.79835 0.86066 1.90866 1.55818 1.43906 1.57403 1.45667 1.10200 1.53589 1.24419 1.21916 0.97507 0.96686 0.84736 1.21383 0.89659 0.98036 0.86886 0.92333 1.22687 0.95996 0.99838 0.96665 1.22906 0.97452 1.01404 0.95362 1.21294 0.91178 0.88951 0.93936 1.44765 1.47596 1.40653 1.00501 1.19301 1.31812 1.02044 0.83836 0.90425 1.25694 1.01388 0.96608 1.01688 1.70135 1.46222 1.14724 1.28220 0.85198 0.78253 0.76831 0.79805 1.20615 1.22296 1.19867 0.89682 0.94860 0.91525 0.86347 0.89737 0.87889 0.90535 0.90200 0.90037 0.92339 0.77760 0.78000 0.73665 0.94164 0.94368 0.87039 0.91741 0.89972 0.90887 0.99226 0.94543 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.11 1.05 5.98 86.38 0.52 1.57 16 3 N -0.99 -13.40 2.71 -515.78 -1.40 -14.80 16 4 C 0.10 0.95 6.38 86.38 0.55 1.50 16 5 C -0.18 -0.76 10.24 71.98 0.74 -0.02 16 6 S 2.63 63.86 4.51 -56.49 -0.25 63.61 16 7 O -0.98 -31.91 16.75 -127.64 -2.14 -34.05 16 8 O -0.99 -32.00 16.53 -127.64 -2.11 -34.11 16 9 C -0.65 -10.25 6.66 71.23 0.47 -9.78 16 10 C 0.52 15.39 7.85 87.66 0.69 16.07 16 11 O -0.60 -25.28 15.86 -3.03 -0.05 -25.33 16 12 N -0.69 -18.06 5.36 -463.06 -2.48 -20.54 16 13 C 0.12 4.49 5.10 86.38 0.44 4.93 16 14 C 0.15 5.40 3.19 45.34 0.14 5.54 16 15 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 16 C -0.11 -3.21 6.22 31.87 0.20 -3.02 16 17 C -0.13 -4.40 7.09 32.08 0.23 -4.17 16 18 C 0.17 8.25 5.42 86.85 0.47 8.72 16 19 N -0.61 -30.26 3.13 -668.23 -2.09 -32.35 16 20 C -0.24 -13.39 9.72 84.03 0.82 -12.57 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.06 -3.45 5.47 84.86 0.46 -2.98 16 23 N -0.95 -57.42 10.58 21.65 0.23 -57.19 16 24 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.03 0.63 7.90 -2.39 -0.02 0.61 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 0.24 8.11 -2.39 -0.02 0.22 16 32 H 0.08 0.77 7.61 -2.38 -0.02 0.75 16 33 H 0.10 0.61 8.11 -2.39 -0.02 0.59 16 34 H 0.08 1.07 6.82 -2.38 -0.02 1.05 16 35 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.06 0.21 6.96 -2.39 -0.02 0.19 16 38 H 0.21 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.20 1.32 6.96 -2.39 -0.02 1.30 16 40 H 0.42 6.77 8.39 -92.71 -0.78 5.99 16 41 H 0.04 1.77 8.03 -2.38 -0.02 1.75 16 42 H 0.04 1.71 7.86 -2.39 -0.02 1.69 16 43 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 45 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16 48 H 0.04 1.98 6.94 -2.38 -0.02 1.97 16 49 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -91.21 404.76 -1.64 -92.86 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.16 Total: 8.73 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.46 Total: 4.31 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -5.74 Total: -124.89 kcal Atomic # 8 Polarization: -89.18 SS G_CDS: -4.30 Total: -93.48 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 16 Polarization: 63.86 SS G_CDS: -0.25 Total: 63.61 kcal Total: -91.21 -1.64 -92.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493139842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.934 kcal (2) G-P(sol) polarization free energy of solvation -91.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds