Wall clock time and date at job start Wed Apr 1 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47236 * 2 1 4 4 C 1.46505 * 119.99931 * 275.00300 * 3 2 1 5 5 C 1.53006 * 109.46781 * 274.99692 * 4 3 2 6 6 S 1.65594 * 120.00148 * 94.99949 * 3 2 1 7 7 O 1.42101 * 104.27837 * 333.92980 * 6 3 2 8 8 O 1.42101 * 104.27845 * 206.07375 * 6 3 2 9 9 C 1.81400 * 104.45045 * 90.00081 * 6 3 2 10 10 C 1.50693 * 109.47475 * 180.02562 * 9 6 3 11 11 O 1.21286 * 120.00029 * 359.97438 * 10 9 6 12 12 N 1.34775 * 120.00550 * 179.97438 * 10 9 6 13 13 C 1.46504 * 119.99795 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00541 * 179.97438 * 12 10 9 15 15 C 1.53784 * 113.61569 * 240.00166 * 14 12 10 16 16 C 1.53787 * 87.07923 * 220.01663 * 15 14 12 17 17 N 1.46501 * 113.61128 * 139.98386 * 16 15 14 18 18 C 1.36937 * 119.99940 * 155.00138 * 17 16 15 19 19 H 1.07995 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99758 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99944 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46803 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47215 * 119.99627 * 22 20 18 25 25 H 1.48496 * 109.46748 * 239.99992 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 14 12 10 27 27 H 1.09000 * 109.46789 * 300.00209 * 1 2 3 28 28 H 1.08999 * 109.46708 * 59.99834 * 1 2 3 29 29 H 1.08995 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47206 * 240.00130 * 2 1 3 31 31 H 1.08998 * 109.47153 * 119.99878 * 2 1 3 32 32 H 1.08995 * 109.47211 * 34.99295 * 4 3 2 33 33 H 1.09003 * 109.47093 * 155.00259 * 4 3 2 34 34 H 1.08993 * 109.47409 * 299.99977 * 5 4 3 35 35 H 1.09003 * 109.46843 * 60.00415 * 5 4 3 36 36 H 1.08999 * 109.46732 * 180.02562 * 5 4 3 37 37 H 1.08999 * 109.47324 * 59.99997 * 9 6 3 38 38 H 1.08999 * 109.47123 * 300.00475 * 9 6 3 39 39 H 1.09004 * 109.46666 * 269.99777 * 13 12 10 40 40 H 1.08999 * 109.47266 * 29.99467 * 13 12 10 41 41 H 1.08995 * 109.47412 * 150.00054 * 13 12 10 42 42 H 1.09002 * 112.90477 * 11.25212 * 14 12 10 43 43 H 1.09004 * 113.61451 * 105.47149 * 15 14 12 44 44 H 1.08994 * 113.61477 * 334.56451 * 15 14 12 45 45 H 1.09000 * 113.61529 * 270.88430 * 16 15 14 46 46 H 0.97005 * 120.00129 * 334.99728 * 17 16 15 47 47 H 0.97007 * 119.99563 * 179.97438 * 21 20 18 48 48 H 1.09006 * 113.61307 * 25.43652 * 26 14 12 49 49 H 1.09007 * 113.61642 * 254.53409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.5152 1.7839 -1.8918 6 16 2.4122 2.1202 1.4286 7 8 1.6209 1.4496 2.3999 8 8 2.2334 3.5055 1.1676 9 6 4.1697 1.7389 1.6660 10 6 4.6505 2.3645 2.9499 11 8 3.8833 3.0050 3.6370 12 7 5.9332 2.2123 3.3348 13 6 6.8602 1.4391 2.5047 14 6 6.4007 2.8209 4.5826 15 6 7.5445 3.8298 4.3853 16 6 8.1732 3.2473 5.6622 17 7 9.6290 3.1015 5.5855 18 6 10.3781 3.0989 6.7318 19 1 9.8958 3.2046 7.6923 20 6 11.7573 2.9602 6.6592 21 7 12.3450 2.8308 5.4886 22 14 12.7792 2.9558 8.2229 23 1 11.8859 3.1149 9.3984 24 1 13.5148 1.6702 8.3300 25 1 13.7493 4.0794 8.1834 26 6 7.4071 1.9502 5.3534 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 4.3117 2.0829 -1.2105 35 1 3.5812 0.7123 -2.0801 36 1 3.6195 2.3255 -2.8319 37 1 4.7442 2.1375 0.8299 38 1 4.3035 0.6583 1.7164 39 1 6.8353 0.3930 2.8101 40 1 6.5646 1.5193 1.4586 41 1 7.8703 1.8295 2.6277 42 1 5.5868 3.1990 5.2012 43 1 7.2323 4.8692 4.4872 44 1 8.1348 3.6503 3.4868 45 1 7.8439 3.7421 6.5759 46 1 10.0622 3.0069 4.7228 47 1 13.3089 2.7342 5.4379 48 1 7.9600 1.2569 4.7195 49 1 6.9840 1.4721 6.2370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508138590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:44 Heat of formation + Delta-G solvation = -64.634083 kcal Electronic energy + Delta-G solvation = -29385.073514 eV Core-core repulsion = 25283.034847 eV Total energy + Delta-G solvation = -4102.038667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.38688 -38.24706 -37.62929 -37.40296 -36.09451 -35.03242 -33.25778 -32.41252 -30.81421 -29.74583 -29.24144 -27.19664 -25.22558 -24.56481 -24.16684 -22.83523 -22.38842 -19.86887 -19.02825 -18.88818 -18.28989 -17.26289 -17.11358 -17.06768 -16.72361 -16.16025 -15.86989 -15.14566 -14.69913 -14.56061 -14.48736 -14.28321 -13.93199 -13.85096 -13.69770 -13.28457 -13.10108 -12.96073 -12.89023 -12.56978 -12.41527 -12.27720 -12.25914 -12.20305 -12.13242 -12.09275 -11.89534 -11.45349 -11.37857 -11.29759 -11.12647 -10.96636 -10.70622 -10.56337 -10.36728 -10.19684 -9.99502 -9.67027 -9.55651 -8.96239 -8.66895 -7.05346 -5.85930 -3.14954 -0.15507 2.22753 2.30276 2.77726 3.38566 3.45123 3.46846 3.58129 3.80245 3.90987 4.24283 4.41730 4.53487 4.60406 4.67453 4.69169 4.88731 4.89516 4.93901 4.97263 5.00497 5.07493 5.08979 5.28712 5.29006 5.34454 5.41044 5.42192 5.48175 5.59280 5.67409 5.75299 5.78210 5.86521 5.88866 6.05611 6.15099 6.19417 6.23111 6.26695 6.48686 6.65770 6.90249 7.23962 7.64668 7.78729 8.32404 9.44134 9.99728 10.34457 11.36419 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.002049 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.015104 B =13662.398878 C =13979.771094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -1.002 6.002 4 C 0.106 3.894 5 C -0.179 4.179 6 S 2.640 3.360 7 O -0.936 6.936 8 O -0.938 6.938 9 C -0.675 4.675 10 C 0.539 3.461 11 O -0.542 6.542 12 N -0.583 5.583 13 C 0.070 3.930 14 C 0.111 3.889 15 C -0.163 4.163 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.174 4.174 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.084 0.916 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.619 -7.369 -18.393 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.840 5.840 4 C -0.020 4.020 5 C -0.237 4.237 6 S 2.728 3.272 7 O -0.926 6.926 8 O -0.928 6.928 9 C -0.803 4.803 10 C 0.325 3.675 11 O -0.421 6.421 12 N -0.313 5.313 13 C -0.073 4.073 14 C 0.008 3.992 15 C -0.203 4.203 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.216 4.216 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.430 -6.541 -17.302 28.309 hybrid contribution 1.664 -0.651 0.032 1.787 sum -19.766 -7.192 -17.270 27.215 Atomic orbital electron populations 1.22205 0.95560 1.02546 1.02979 1.21260 0.95184 0.81075 1.03099 1.57865 1.79314 1.24215 1.22639 1.21428 0.98033 0.97640 0.84854 1.22312 0.97189 1.02649 1.01588 1.04447 0.75866 0.74211 0.72696 1.93586 1.64002 1.75802 1.59168 1.93571 1.84233 1.31127 1.83851 1.31255 1.30562 1.12684 1.05752 1.19146 0.83135 0.80332 0.84912 1.90834 1.54141 1.41840 1.55290 1.47759 1.08717 1.51362 1.23485 1.21907 0.95169 0.96085 0.94172 1.22806 0.96027 0.96083 0.84293 1.23953 0.96560 0.98675 1.01138 1.21336 0.85148 0.92650 0.95142 1.42356 0.99597 1.85810 1.06924 1.19362 0.89026 1.42226 0.86900 0.90878 1.24774 0.96672 1.02616 0.96827 1.69666 1.09348 1.56741 1.22306 0.86098 0.80311 0.77188 0.82478 1.20450 1.21834 1.21818 1.24352 0.97183 1.00569 0.99515 0.91487 0.92297 0.91379 0.90238 0.90054 0.89694 0.88566 0.92748 0.91847 0.90891 0.82451 0.82467 0.91901 0.91203 0.89412 0.86344 0.91409 0.89973 0.90041 0.78123 0.93484 0.89769 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.12 0.67 5.98 -4.04 -0.02 0.65 16 3 N -1.00 -7.31 2.71 -114.37 -0.31 -7.62 16 4 C 0.11 0.60 6.38 -4.04 -0.03 0.57 16 5 C -0.18 -0.72 10.24 37.16 0.38 -0.34 16 6 S 2.64 30.37 4.51 -107.50 -0.48 29.88 16 7 O -0.94 -13.65 16.75 -57.55 -0.96 -14.61 16 8 O -0.94 -13.86 16.53 -57.55 -0.95 -14.81 16 9 C -0.68 -6.13 5.21 36.00 0.19 -5.94 16 10 C 0.54 7.60 7.69 -10.99 -0.08 7.51 16 11 O -0.54 -9.78 15.35 5.55 0.09 -9.69 16 12 N -0.58 -7.77 3.08 -173.00 -0.53 -8.30 16 13 C 0.07 0.69 8.84 59.85 0.53 1.22 16 14 C 0.11 1.69 4.20 -67.12 -0.28 1.41 16 15 C -0.16 -2.65 7.37 -25.91 -0.19 -2.84 16 16 C 0.17 3.24 4.48 -67.12 -0.30 2.94 16 17 N -0.71 -17.01 5.40 -52.64 -0.28 -17.30 16 18 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 C -0.17 -2.87 7.30 -25.92 -0.19 -3.06 16 27 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.25 8.11 -51.93 -0.42 -0.17 16 31 H 0.08 0.43 7.61 -51.93 -0.40 0.04 16 32 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.10 0.66 6.82 -51.93 -0.35 0.31 16 34 H 0.05 0.22 6.96 -51.93 -0.36 -0.14 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.16 0.94 6.22 -51.92 -0.32 0.61 16 38 H 0.16 0.89 8.11 -51.92 -0.42 0.47 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 41 H 0.09 0.97 6.33 -51.93 -0.33 0.64 16 42 H 0.12 1.91 7.24 -51.93 -0.38 1.53 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.31 6.89 -51.93 -0.36 0.96 16 45 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 46 H 0.38 9.70 7.92 -40.82 -0.32 9.37 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.08 1.39 6.72 -51.93 -0.35 1.04 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -36.50 404.29 -9.62 -46.11 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.10 Total: 5.68 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 0.13 Total: -5.76 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.40 Total: -59.82 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.83 Total: -39.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 30.37 SS G_CDS: -0.48 Total: 29.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.50 -9.62 -46.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508138590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.519 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds