Wall clock time and date at job start Wed Apr 1 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81404 * 109.46996 * 2 1 4 4 O 1.42098 * 110.54150 * 68.37433 * 3 2 1 5 5 O 1.42101 * 110.53991 * 291.62650 * 3 2 1 6 6 N 1.65595 * 104.44644 * 179.97438 * 3 2 1 7 7 C 1.46503 * 120.00026 * 90.00426 * 6 3 2 8 8 C 1.46495 * 120.00124 * 269.99832 * 6 3 2 9 9 C 1.50703 * 109.47092 * 265.00189 * 8 6 3 10 10 O 1.21282 * 120.00219 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99853 * 179.97438 * 9 8 6 12 12 C 1.46933 * 120.63432 * 354.41846 * 11 9 8 13 13 C 1.53192 * 108.77401 * 126.36614 * 12 11 9 14 14 C 1.53036 * 109.31304 * 54.63889 * 13 12 11 15 15 C 1.53041 * 109.53764 * 298.63309 * 14 13 12 16 16 C 1.46929 * 120.63015 * 174.13916 * 11 9 8 17 17 H 1.09004 * 109.58652 * 113.84488 * 16 11 9 18 18 C 1.52999 * 109.58513 * 353.42005 * 16 11 9 19 19 N 1.46505 * 109.46814 * 181.62221 * 18 16 11 20 20 C 1.36943 * 119.99537 * 184.94565 * 19 18 16 21 21 H 1.07995 * 120.00233 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99451 * 180.02562 * 20 19 18 23 23 N 1.31610 * 120.00259 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99662 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47307 * 89.99955 * 24 22 20 26 26 H 1.48500 * 109.47223 * 209.99855 * 24 22 20 27 27 H 1.48505 * 109.47316 * 330.00311 * 24 22 20 28 28 H 1.09001 * 109.47287 * 299.99898 * 1 2 3 29 29 H 1.09000 * 109.47057 * 60.00339 * 1 2 3 30 30 H 1.09004 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47287 * 240.00102 * 2 1 3 32 32 H 1.08992 * 109.46903 * 119.99940 * 2 1 3 33 33 H 1.09002 * 109.47402 * 89.99670 * 7 6 3 34 34 H 1.09004 * 109.46853 * 329.99872 * 7 6 3 35 35 H 1.09004 * 109.47020 * 209.99724 * 7 6 3 36 36 H 1.09001 * 109.47163 * 25.00440 * 8 6 3 37 37 H 1.08993 * 109.47200 * 145.00425 * 8 6 3 38 38 H 1.08994 * 109.58890 * 246.15585 * 12 11 9 39 39 H 1.09003 * 109.58157 * 6.44127 * 12 11 9 40 40 H 1.09005 * 109.49307 * 174.58940 * 13 12 11 41 41 H 1.08995 * 109.50049 * 294.65309 * 13 12 11 42 42 H 1.09011 * 109.46049 * 58.65384 * 14 13 12 43 43 H 1.09000 * 109.46296 * 178.62173 * 14 13 12 44 44 H 1.09005 * 109.49662 * 181.31490 * 15 14 13 45 45 H 1.08996 * 109.49961 * 301.41270 * 15 14 13 46 46 H 1.09001 * 109.47385 * 301.62104 * 18 16 11 47 47 H 1.08995 * 109.46984 * 61.62448 * 18 16 11 48 48 H 0.96993 * 120.00080 * 4.94685 * 19 18 16 49 49 H 0.97004 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.5145 1.5011 -1.2677 8 6 4.5134 1.5014 1.2697 9 6 4.9942 2.8801 1.6428 10 8 4.7513 3.8233 0.9201 11 7 5.6933 3.0651 2.7801 12 6 5.8901 1.9584 3.7264 13 6 7.3891 1.8079 4.0041 14 6 7.9530 3.1489 4.4793 15 6 7.7682 4.1995 3.3819 16 6 6.2783 4.3757 3.0944 17 1 5.7865 4.7943 3.9726 18 6 6.0957 5.3179 1.9029 19 7 6.7139 6.6116 2.2041 20 6 6.5886 7.6520 1.3225 21 1 6.0339 7.5191 0.4055 22 6 7.1748 8.8776 1.6077 23 7 7.8513 9.0395 2.7250 24 14 7.0034 10.2971 0.4056 25 1 5.7871 11.0821 0.7367 26 1 8.1988 11.1730 0.5003 27 1 6.8880 9.7647 -0.9759 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.7856 2.5089 -1.5824 34 1 3.8830 1.0407 -2.0276 35 1 5.4183 0.9058 -1.1369 36 1 3.8526 1.1235 2.0498 37 1 5.3690 0.8345 1.1639 38 1 5.3661 2.1758 4.6570 39 1 5.5018 1.0357 3.2952 40 1 7.5420 1.0545 4.7769 41 1 7.8993 1.5012 3.0910 42 1 7.4253 3.4665 5.3787 43 1 9.0145 3.0384 4.7010 44 1 8.1910 5.1485 3.7119 45 1 8.2749 3.8709 2.4746 46 1 6.5694 4.8853 1.0216 47 1 5.0321 5.4593 1.7111 48 1 7.2118 6.7311 3.0278 49 1 8.2605 9.8960 2.9244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566950101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:38 Heat of formation + Delta-G solvation = -102.511768 kcal Electronic energy + Delta-G solvation = -30555.805544 eV Core-core repulsion = 26452.124377 eV Total energy + Delta-G solvation = -4103.681167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.56339 -38.68781 -38.23360 -37.06251 -36.86111 -36.45243 -34.04117 -34.02030 -33.69587 -31.51628 -29.72906 -27.72553 -26.46840 -25.45271 -24.97009 -24.65356 -22.60636 -21.92856 -20.38165 -19.72409 -19.19965 -18.72977 -18.16427 -17.52115 -17.31337 -17.00833 -16.48490 -16.38805 -15.68678 -15.51828 -15.32513 -15.24671 -15.03531 -14.86546 -14.66468 -14.52151 -14.28247 -14.04148 -13.92377 -13.76606 -13.54390 -13.41446 -13.27458 -13.20044 -13.07951 -12.87701 -12.64743 -12.61066 -12.49723 -12.39449 -12.22595 -12.09933 -12.00465 -11.81096 -11.55413 -11.54533 -11.37225 -11.03992 -10.64820 -9.74844 -9.54762 -8.99291 -8.00422 -5.28509 -0.81826 1.39552 1.43171 1.52112 1.56511 1.70883 2.02347 2.52665 2.97842 3.09130 3.31612 3.53245 3.57351 3.78048 3.87489 3.90583 3.93002 4.00975 4.11641 4.17062 4.22760 4.29970 4.39169 4.41382 4.46195 4.61416 4.64874 4.71089 4.73631 4.82420 4.86776 4.91887 4.99676 5.05636 5.08130 5.12356 5.15655 5.21316 5.28291 5.32544 5.41521 5.43791 5.51652 5.71584 6.23061 6.54731 7.28327 7.31819 8.03161 8.31741 9.23160 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.003469 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.274524 B = 8069.326855 C =10013.797483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.588 4.588 3 S 2.582 3.418 4 O -0.995 6.995 5 O -1.002 7.002 6 N -0.988 5.988 7 C 0.091 3.909 8 C 0.109 3.891 9 C 0.471 3.529 10 O -0.570 6.570 11 N -0.607 5.607 12 C 0.096 3.904 13 C -0.126 4.126 14 C -0.116 4.116 15 C -0.117 4.117 16 C 0.148 3.852 17 H 0.059 0.941 18 C 0.174 3.826 19 N -0.745 5.745 20 C -0.247 4.247 21 H 0.057 0.943 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.975 3.025 25 H -0.285 1.285 26 H -0.283 1.283 27 H -0.277 1.277 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.019 0.981 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.001 0.999 47 H 0.023 0.977 48 H 0.374 0.626 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -33.958 0.884 34.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.722 4.722 3 S 2.681 3.319 4 O -0.986 6.986 5 O -0.992 6.992 6 N -0.824 5.824 7 C -0.054 4.054 8 C -0.020 4.020 9 C 0.259 3.741 10 O -0.448 6.448 11 N -0.342 5.342 12 C -0.025 4.025 13 C -0.164 4.164 14 C -0.154 4.154 15 C -0.156 4.156 16 C 0.044 3.956 17 H 0.077 0.923 18 C 0.048 3.952 19 N -0.390 5.390 20 C -0.379 4.379 21 H 0.075 0.925 22 C -0.263 4.263 23 N -0.616 5.616 24 Si 0.803 3.197 25 H -0.212 1.212 26 H -0.209 1.209 27 H -0.202 1.202 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.182 0.818 32 H 0.188 0.812 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.019 0.981 47 H 0.040 0.960 48 H 0.207 0.793 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.237 -32.574 0.312 33.601 hybrid contribution 0.362 1.498 -0.432 1.600 sum -7.875 -31.077 -0.120 32.059 Atomic orbital electron populations 1.21740 0.90454 1.06829 1.03348 1.30234 1.06890 1.20003 1.15102 1.05846 0.73241 0.80010 0.72818 1.93554 1.83554 1.75089 1.46383 1.93530 1.83638 1.75264 1.46809 1.57027 1.24215 1.89551 1.11562 1.21627 0.98987 1.01435 0.83333 1.21583 1.01396 0.92553 0.86462 1.22375 0.77706 0.93436 0.80560 1.90820 1.57148 1.43748 1.53091 1.48340 1.52831 1.11378 1.21608 1.22242 0.97838 0.89174 0.93241 1.21920 0.94415 0.96988 1.03033 1.21543 1.02139 0.94825 0.96865 1.21722 0.93798 1.00111 0.99930 1.21072 0.94646 0.83285 0.96589 0.92327 1.21084 0.95370 0.84713 0.93983 1.42735 1.63970 1.08613 1.23716 1.19487 1.26824 0.91421 1.00180 0.92519 1.25532 1.00858 1.00160 0.99779 1.69796 1.40838 1.24805 1.26188 0.85130 0.77073 0.79091 0.78404 1.21237 1.20879 1.20197 0.91283 0.91644 0.86747 0.81802 0.81158 0.96191 0.88903 0.87405 0.84200 0.82188 0.90231 0.85504 0.87049 0.91166 0.91503 0.90580 0.93025 0.92984 0.98114 0.95952 0.79278 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.92 71.98 0.71 -0.72 16 2 C -0.59 -4.24 6.90 71.98 0.50 -3.75 16 3 S 2.58 58.53 5.32 -56.49 -0.30 58.23 16 4 O -1.00 -31.18 16.98 -127.65 -2.17 -33.35 16 5 O -1.00 -32.28 17.09 -127.65 -2.18 -34.46 16 6 N -0.99 -19.52 2.61 -543.22 -1.42 -20.94 16 7 C 0.09 1.63 10.23 127.77 1.31 2.93 16 8 C 0.11 1.79 4.11 85.64 0.35 2.14 16 9 C 0.47 14.84 7.59 87.66 0.67 15.51 16 10 O -0.57 -25.79 11.98 -3.04 -0.04 -25.83 16 11 N -0.61 -17.14 2.98 -795.80 -2.37 -19.51 16 12 C 0.10 1.39 6.35 86.36 0.55 1.94 16 13 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 14 C -0.12 -2.46 5.89 30.62 0.18 -2.28 16 15 C -0.12 -3.88 5.07 30.53 0.15 -3.73 16 16 C 0.15 5.64 3.09 44.83 0.14 5.78 16 17 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 18 C 0.17 8.99 4.14 86.38 0.36 9.35 16 19 N -0.74 -44.19 5.38 -343.44 -1.85 -46.03 16 20 C -0.25 -16.02 9.99 84.03 0.84 -15.18 16 21 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 22 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -62.86 13.06 21.65 0.28 -62.57 16 24 Si 0.97 50.87 29.55 68.60 2.03 52.90 16 25 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 26 H -0.28 -14.24 7.11 99.48 0.71 -13.54 16 27 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.17 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 1.19 7.79 -2.38 -0.02 1.17 16 35 H 0.11 1.08 7.94 -2.38 -0.02 1.06 16 36 H 0.14 1.33 7.17 -2.39 -0.02 1.31 16 37 H 0.16 0.95 7.74 -2.39 -0.02 0.93 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.13 0.65 5.93 -2.39 -0.01 0.64 16 40 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 2.03 6.88 -2.38 -0.02 2.02 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.00 0.05 7.26 -2.39 -0.02 0.04 16 47 H 0.02 1.32 6.21 -2.39 -0.01 1.31 16 48 H 0.37 22.36 6.35 -92.71 -0.59 21.77 16 49 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -103.58 396.39 -1.25 -104.84 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.35 Total: 20.22 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.41 Total: 6.52 kcal Atomic # 7 Polarization: -143.71 SS G_CDS: -5.35 Total: -149.06 kcal Atomic # 8 Polarization: -89.25 SS G_CDS: -4.39 Total: -93.64 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.03 Total: 52.90 kcal Atomic # 16 Polarization: 58.53 SS G_CDS: -0.30 Total: 58.23 kcal Total: -103.58 -1.25 -104.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566950101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.325 kcal (2) G-P(sol) polarization free energy of solvation -103.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds