Wall clock time and date at job start Wed Apr 1 2020 04:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47055 * 2 1 4 4 C 1.46498 * 120.00197 * 275.00255 * 3 2 1 5 5 C 1.53000 * 109.47056 * 274.99786 * 4 3 2 6 6 S 1.65603 * 119.99778 * 95.00039 * 3 2 1 7 7 O 1.42104 * 104.27780 * 333.93151 * 6 3 2 8 8 O 1.42100 * 104.27666 * 206.07306 * 6 3 2 9 9 C 1.81397 * 104.44781 * 90.00083 * 6 3 2 10 10 C 1.50703 * 109.47149 * 180.02562 * 9 6 3 11 11 O 1.21282 * 119.99946 * 359.97438 * 10 9 6 12 12 N 1.34773 * 119.99998 * 180.02562 * 10 9 6 13 13 C 1.47424 * 125.65220 * 359.96798 * 12 10 9 14 14 C 1.54914 * 104.83329 * 155.89586 * 13 12 10 15 15 C 1.55147 * 101.57928 * 37.01130 * 14 13 12 16 16 H 1.09006 * 110.72416 * 82.86303 * 15 14 13 17 17 N 1.46501 * 110.87153 * 206.06148 * 15 14 13 18 18 C 1.36936 * 120.00379 * 268.61457 * 17 15 14 19 19 H 1.07997 * 119.99752 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00367 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00039 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46933 * 90.00000 * 22 20 18 24 24 H 1.48502 * 109.47012 * 210.00129 * 22 20 18 25 25 H 1.48501 * 109.47236 * 329.99774 * 22 20 18 26 26 C 1.47027 * 125.64711 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.88429 * 61.61746 * 26 12 10 28 28 C 1.53005 * 110.00938 * 300.52153 * 26 12 10 29 29 H 1.08991 * 109.46801 * 299.99601 * 1 2 3 30 30 H 1.08997 * 109.46997 * 59.99963 * 1 2 3 31 31 H 1.08998 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47120 * 240.00252 * 2 1 3 33 33 H 1.08997 * 109.46997 * 120.00036 * 2 1 3 34 34 H 1.08997 * 109.46978 * 34.99742 * 4 3 2 35 35 H 1.09000 * 109.47068 * 154.99864 * 4 3 2 36 36 H 1.09004 * 109.47077 * 300.00478 * 5 4 3 37 37 H 1.09000 * 109.47118 * 60.00108 * 5 4 3 38 38 H 1.08998 * 109.47453 * 179.97438 * 5 4 3 39 39 H 1.08992 * 109.47382 * 60.00128 * 9 6 3 40 40 H 1.09004 * 109.47274 * 300.00014 * 9 6 3 41 41 H 1.09000 * 110.36259 * 37.05960 * 13 12 10 42 42 H 1.09001 * 110.46290 * 274.78601 * 13 12 10 43 43 H 1.08997 * 111.00191 * 278.93673 * 14 13 12 44 44 H 1.08996 * 111.00161 * 155.08696 * 14 13 12 45 45 H 0.97002 * 120.00224 * 88.61081 * 17 15 14 46 46 H 0.96998 * 120.00066 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.47215 * 301.80506 * 28 26 12 48 48 H 1.09001 * 109.46642 * 61.80009 * 28 26 12 49 49 H 1.09002 * 109.46991 * 181.80028 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.5152 1.7841 -1.8917 6 16 2.4122 2.1202 1.4287 7 8 1.6209 1.4495 2.4000 8 8 2.2333 3.5055 1.1677 9 6 4.1697 1.7388 1.6661 10 6 4.6505 2.3644 2.9501 11 8 3.8832 3.0048 3.6371 12 7 5.9334 2.2130 3.3344 13 6 6.9682 1.4641 2.5983 14 6 8.3109 2.0801 3.0649 15 6 8.0212 2.3599 4.5632 16 1 8.1727 1.4603 5.1599 17 7 8.8563 3.4560 5.0604 18 6 10.0738 3.1868 5.6265 19 1 10.4182 2.1664 5.7067 20 6 10.8653 4.2255 6.0971 21 7 10.4458 5.4692 5.9989 22 14 12.5258 3.8582 6.8699 23 1 13.5740 3.8667 5.8181 24 1 12.8378 4.8931 7.8881 25 1 12.4857 2.5226 7.5179 26 6 6.5327 2.7673 4.5572 27 1 6.0325 2.3566 5.4342 28 6 6.4105 4.2925 4.5552 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.3618 1.8098 -1.9452 35 1 2.0921 3.1803 -1.0755 36 1 4.3117 2.0829 -1.2103 37 1 3.5813 0.7125 -2.0801 38 1 3.6191 2.3250 -2.8323 39 1 4.7441 2.1375 0.8300 40 1 4.3035 0.6582 1.7164 41 1 6.8420 1.5988 1.5241 42 1 6.9271 0.4054 2.8545 43 1 8.5236 3.0049 2.5287 44 1 9.1279 1.3676 2.9513 45 1 8.5469 4.3726 4.9887 46 1 10.9991 6.1950 6.3274 47 1 6.9017 4.6952 3.6695 48 1 5.3571 4.5724 4.5453 49 1 6.8854 4.6962 5.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571463407.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:14 Heat of formation + Delta-G solvation = -81.354680 kcal Electronic energy + Delta-G solvation = -29990.588995 eV Core-core repulsion = 25887.825268 eV Total energy + Delta-G solvation = -4102.763727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.24091 -37.81743 -37.55112 -37.33582 -36.01767 -34.33837 -32.39018 -32.09962 -30.90184 -30.42449 -29.19667 -28.52993 -25.31037 -24.14980 -23.62593 -22.86203 -22.49560 -20.15151 -18.97901 -18.81291 -18.15882 -17.59738 -16.98582 -16.88461 -16.64899 -15.98537 -15.35140 -15.13864 -14.76451 -14.53847 -14.27812 -14.23633 -13.89874 -13.78983 -13.49926 -13.29880 -13.16467 -12.77664 -12.56139 -12.52414 -12.22048 -12.19290 -12.18043 -12.13906 -12.04174 -11.92335 -11.68635 -11.40661 -11.33115 -11.29460 -11.08811 -10.99961 -10.87899 -10.54019 -10.34183 -10.11893 -10.01857 -9.72130 -9.51561 -9.01657 -8.62972 -7.09680 -5.86879 -3.17516 -0.08844 2.36549 2.38299 2.86084 3.37502 3.42973 3.44993 3.65760 3.88105 4.01530 4.30643 4.49586 4.50963 4.65828 4.72257 4.77524 4.89044 4.93775 4.94071 5.01197 5.09887 5.13523 5.23391 5.33395 5.43285 5.45128 5.47350 5.52578 5.55743 5.71583 5.72466 5.79703 5.91443 5.92487 6.01033 6.14419 6.20171 6.20553 6.44208 6.48268 6.58919 6.74185 6.90318 7.47172 7.60717 7.91875 8.31093 9.42917 9.96718 10.31711 11.35328 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002339 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.313853 B =11968.640275 C =12210.524343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -1.002 6.002 4 C 0.106 3.894 5 C -0.179 4.179 6 S 2.640 3.360 7 O -0.936 6.936 8 O -0.937 6.937 9 C -0.671 4.671 10 C 0.554 3.446 11 O -0.539 6.539 12 N -0.595 5.595 13 C 0.094 3.906 14 C -0.155 4.155 15 C 0.175 3.825 16 H 0.068 0.932 17 N -0.715 5.715 18 C -0.248 4.248 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.123 3.877 27 H 0.077 0.923 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.392 0.608 46 H 0.257 0.743 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 -13.189 -18.271 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.841 5.841 4 C -0.019 4.019 5 C -0.237 4.237 6 S 2.728 3.272 7 O -0.926 6.926 8 O -0.927 6.927 9 C -0.798 4.798 10 C 0.340 3.660 11 O -0.418 6.418 12 N -0.327 5.327 13 C -0.029 4.029 14 C -0.197 4.197 15 C 0.062 3.938 16 H 0.086 0.914 17 N -0.358 5.358 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.020 3.980 27 H 0.095 0.905 28 C -0.220 4.220 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.230 0.770 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.651 -12.390 -17.274 27.003 hybrid contribution 1.734 -0.375 -0.103 1.777 sum -14.917 -12.765 -17.376 26.218 Atomic orbital electron populations 1.22205 0.95588 1.02503 1.02988 1.21254 0.95158 0.81132 1.03059 1.57875 1.79336 1.24178 1.22666 1.21422 0.97991 0.97677 0.84853 1.22312 0.97248 1.02590 1.01592 1.04429 0.75834 0.74217 0.72671 1.93583 1.64031 1.75823 1.59149 1.93573 1.84217 1.31076 1.83814 1.31223 1.30404 1.12552 1.05658 1.18669 0.81916 0.80582 0.84863 1.90836 1.53795 1.41899 1.55312 1.48455 1.08121 1.51534 1.24619 1.22477 0.88566 0.95814 0.96053 1.23590 0.94168 1.01297 1.00619 1.21176 0.87214 0.93080 0.92308 0.91415 1.42661 1.18170 1.04161 1.70842 1.19234 0.93776 0.92980 1.31871 0.91016 1.24774 0.99019 0.95241 1.01566 1.69658 1.38120 0.98063 1.51847 0.86164 0.83914 0.77168 0.78727 1.21670 1.21707 1.20696 1.22041 0.95213 0.95290 0.85462 0.90493 1.22041 1.02276 0.94230 1.03474 0.91469 0.92313 0.91417 0.90283 0.90070 0.89733 0.88545 0.92693 0.91898 0.90914 0.82603 0.82630 0.91238 0.91173 0.90526 0.90289 0.77041 0.93283 0.92437 0.91875 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.12 0.73 5.98 -4.04 -0.02 0.70 16 3 N -1.00 -7.96 2.71 -114.38 -0.31 -8.27 16 4 C 0.11 0.67 6.38 -4.04 -0.03 0.64 16 5 C -0.18 -0.84 10.24 37.16 0.38 -0.46 16 6 S 2.64 32.54 4.51 -107.50 -0.48 32.06 16 7 O -0.94 -14.28 16.75 -57.55 -0.96 -15.24 16 8 O -0.94 -14.69 16.53 -57.55 -0.95 -15.64 16 9 C -0.67 -6.84 5.67 36.01 0.20 -6.63 16 10 C 0.55 8.60 7.65 -10.99 -0.08 8.52 16 11 O -0.54 -10.48 14.77 5.56 0.08 -10.40 16 12 N -0.59 -8.97 3.08 -163.01 -0.50 -9.47 16 13 C 0.09 1.12 6.69 -2.53 -0.02 1.11 16 14 C -0.16 -2.37 6.77 -24.58 -0.17 -2.54 16 15 C 0.17 3.24 3.48 -66.10 -0.23 3.01 16 16 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 17 N -0.72 -16.90 4.95 -51.66 -0.26 -17.15 16 18 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.12 2.17 3.47 -66.95 -0.23 1.94 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 28 C -0.16 -3.08 7.94 37.16 0.29 -2.78 16 29 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.28 8.11 -51.92 -0.42 -0.14 16 33 H 0.08 0.47 7.61 -51.93 -0.40 0.07 16 34 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 35 H 0.10 0.73 6.82 -51.93 -0.35 0.38 16 36 H 0.05 0.27 6.96 -51.93 -0.36 -0.09 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.16 1.14 6.66 -51.93 -0.35 0.79 16 40 H 0.16 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.39 9.84 5.06 -40.82 -0.21 9.64 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 48 H 0.06 1.21 6.76 -51.93 -0.35 0.86 16 49 H 0.08 1.73 6.78 -51.93 -0.35 1.38 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -35.74 400.97 -9.60 -45.34 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.19 Total: 6.89 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.23 Total: -4.29 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.34 Total: -61.38 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.83 Total: -41.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 32.54 SS G_CDS: -0.48 Total: 32.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.74 -9.60 -45.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571463407.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.010 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds