Wall clock time and date at job start Wed Apr 1 2020 04:51:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46500 * 109.47055 * 2 1
4 4 C 1.46498 * 120.00197 * 275.00255 * 3 2 1
5 5 C 1.53000 * 109.47056 * 274.99786 * 4 3 2
6 6 S 1.65603 * 119.99778 * 95.00039 * 3 2 1
7 7 O 1.42104 * 104.27780 * 333.93151 * 6 3 2
8 8 O 1.42100 * 104.27666 * 206.07306 * 6 3 2
9 9 C 1.81397 * 104.44781 * 90.00083 * 6 3 2
10 10 C 1.50703 * 109.47149 * 180.02562 * 9 6 3
11 11 O 1.21282 * 119.99946 * 359.97438 * 10 9 6
12 12 N 1.34773 * 119.99998 * 180.02562 * 10 9 6
13 13 C 1.47424 * 125.65220 * 359.96798 * 12 10 9
14 14 C 1.54914 * 104.83329 * 155.89586 * 13 12 10
15 15 C 1.55147 * 101.57928 * 37.01130 * 14 13 12
16 16 H 1.09006 * 110.72416 * 82.86303 * 15 14 13
17 17 N 1.46501 * 110.87153 * 206.06148 * 15 14 13
18 18 C 1.36936 * 120.00379 * 268.61457 * 17 15 14
19 19 H 1.07997 * 119.99752 * 359.97438 * 18 17 15
20 20 C 1.38809 * 120.00367 * 179.97438 * 18 17 15
21 21 N 1.31621 * 120.00039 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 120.00037 * 179.97438 * 20 18 17
23 23 H 1.48498 * 109.46933 * 90.00000 * 22 20 18
24 24 H 1.48502 * 109.47012 * 210.00129 * 22 20 18
25 25 H 1.48501 * 109.47236 * 329.99774 * 22 20 18
26 26 C 1.47027 * 125.64711 * 179.97438 * 12 10 9
27 27 H 1.09002 * 109.88429 * 61.61746 * 26 12 10
28 28 C 1.53005 * 110.00938 * 300.52153 * 26 12 10
29 29 H 1.08991 * 109.46801 * 299.99601 * 1 2 3
30 30 H 1.08997 * 109.46997 * 59.99963 * 1 2 3
31 31 H 1.08998 * 109.46843 * 179.97438 * 1 2 3
32 32 H 1.09007 * 109.47120 * 240.00252 * 2 1 3
33 33 H 1.08997 * 109.46997 * 120.00036 * 2 1 3
34 34 H 1.08997 * 109.46978 * 34.99742 * 4 3 2
35 35 H 1.09000 * 109.47068 * 154.99864 * 4 3 2
36 36 H 1.09004 * 109.47077 * 300.00478 * 5 4 3
37 37 H 1.09000 * 109.47118 * 60.00108 * 5 4 3
38 38 H 1.08998 * 109.47453 * 179.97438 * 5 4 3
39 39 H 1.08992 * 109.47382 * 60.00128 * 9 6 3
40 40 H 1.09004 * 109.47274 * 300.00014 * 9 6 3
41 41 H 1.09000 * 110.36259 * 37.05960 * 13 12 10
42 42 H 1.09001 * 110.46290 * 274.78601 * 13 12 10
43 43 H 1.08997 * 111.00191 * 278.93673 * 14 13 12
44 44 H 1.08996 * 111.00161 * 155.08696 * 14 13 12
45 45 H 0.97002 * 120.00224 * 88.61081 * 17 15 14
46 46 H 0.96998 * 120.00066 * 180.02562 * 21 20 18
47 47 H 1.08994 * 109.47215 * 301.80506 * 28 26 12
48 48 H 1.09001 * 109.46642 * 61.80009 * 28 26 12
49 49 H 1.09002 * 109.46991 * 181.80028 * 28 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1582 2.1087 -1.2639
5 6 3.5152 1.7841 -1.8917
6 16 2.4122 2.1202 1.4287
7 8 1.6209 1.4495 2.4000
8 8 2.2333 3.5055 1.1677
9 6 4.1697 1.7388 1.6661
10 6 4.6505 2.3644 2.9501
11 8 3.8832 3.0048 3.6371
12 7 5.9334 2.2130 3.3344
13 6 6.9682 1.4641 2.5983
14 6 8.3109 2.0801 3.0649
15 6 8.0212 2.3599 4.5632
16 1 8.1727 1.4603 5.1599
17 7 8.8563 3.4560 5.0604
18 6 10.0738 3.1868 5.6265
19 1 10.4182 2.1664 5.7067
20 6 10.8653 4.2255 6.0971
21 7 10.4458 5.4692 5.9989
22 14 12.5258 3.8582 6.8699
23 1 13.5740 3.8667 5.8181
24 1 12.8378 4.8931 7.8881
25 1 12.4857 2.5226 7.5179
26 6 6.5327 2.7673 4.5572
27 1 6.0325 2.3566 5.4342
28 6 6.4105 4.2925 4.5552
29 1 -0.3632 0.5137 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5138 -0.8901
33 1 1.8934 -0.5138 0.8900
34 1 1.3618 1.8098 -1.9452
35 1 2.0921 3.1803 -1.0755
36 1 4.3117 2.0829 -1.2103
37 1 3.5813 0.7125 -2.0801
38 1 3.6191 2.3250 -2.8323
39 1 4.7441 2.1375 0.8300
40 1 4.3035 0.6582 1.7164
41 1 6.8420 1.5988 1.5241
42 1 6.9271 0.4054 2.8545
43 1 8.5236 3.0049 2.5287
44 1 9.1279 1.3676 2.9513
45 1 8.5469 4.3726 4.9887
46 1 10.9991 6.1950 6.3274
47 1 6.9017 4.6952 3.6695
48 1 5.3571 4.5724 4.5453
49 1 6.8854 4.6962 5.4494
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571463407.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:51:14
Heat of formation + Delta-G solvation = -81.354680 kcal
Electronic energy + Delta-G solvation = -29990.588995 eV
Core-core repulsion = 25887.825268 eV
Total energy + Delta-G solvation = -4102.763727 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 2.42 seconds
Orbital eigenvalues (eV)
-40.24091 -37.81743 -37.55112 -37.33582 -36.01767 -34.33837 -32.39018 -32.09962
-30.90184 -30.42449 -29.19667 -28.52993 -25.31037 -24.14980 -23.62593 -22.86203
-22.49560 -20.15151 -18.97901 -18.81291 -18.15882 -17.59738 -16.98582 -16.88461
-16.64899 -15.98537 -15.35140 -15.13864 -14.76451 -14.53847 -14.27812 -14.23633
-13.89874 -13.78983 -13.49926 -13.29880 -13.16467 -12.77664 -12.56139 -12.52414
-12.22048 -12.19290 -12.18043 -12.13906 -12.04174 -11.92335 -11.68635 -11.40661
-11.33115 -11.29460 -11.08811 -10.99961 -10.87899 -10.54019 -10.34183 -10.11893
-10.01857 -9.72130 -9.51561 -9.01657 -8.62972 -7.09680 -5.86879 -3.17516
-0.08844 2.36549 2.38299 2.86084 3.37502 3.42973 3.44993 3.65760
3.88105 4.01530 4.30643 4.49586 4.50963 4.65828 4.72257 4.77524
4.89044 4.93775 4.94071 5.01197 5.09887 5.13523 5.23391 5.33395
5.43285 5.45128 5.47350 5.52578 5.55743 5.71583 5.72466 5.79703
5.91443 5.92487 6.01033 6.14419 6.20171 6.20553 6.44208 6.48268
6.58919 6.74185 6.90318 7.47172 7.60717 7.91875 8.31093 9.42917
9.96718 10.31711 11.35328
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.026376 B = 0.002339 C = 0.002293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1061.313853 B =11968.640275 C =12210.524343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.119 3.881
3 N -1.002 6.002
4 C 0.106 3.894
5 C -0.179 4.179
6 S 2.640 3.360
7 O -0.936 6.936
8 O -0.937 6.937
9 C -0.671 4.671
10 C 0.554 3.446
11 O -0.539 6.539
12 N -0.595 5.595
13 C 0.094 3.906
14 C -0.155 4.155
15 C 0.175 3.825
16 H 0.068 0.932
17 N -0.715 5.715
18 C -0.248 4.248
19 H 0.072 0.928
20 C -0.009 4.009
21 N -0.930 5.930
22 Si 0.910 3.090
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.281 1.281
26 C 0.123 3.877
27 H 0.077 0.923
28 C -0.162 4.162
29 H 0.066 0.934
30 H 0.058 0.942
31 H 0.067 0.933
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.084 0.916
35 H 0.096 0.904
36 H 0.054 0.946
37 H 0.062 0.938
38 H 0.072 0.928
39 H 0.156 0.844
40 H 0.156 0.844
41 H 0.069 0.931
42 H 0.070 0.930
43 H 0.076 0.924
44 H 0.079 0.921
45 H 0.392 0.608
46 H 0.257 0.743
47 H 0.057 0.943
48 H 0.062 0.938
49 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.805 -13.189 -18.271 27.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.006 4.006
3 N -0.841 5.841
4 C -0.019 4.019
5 C -0.237 4.237
6 S 2.728 3.272
7 O -0.926 6.926
8 O -0.927 6.927
9 C -0.798 4.798
10 C 0.340 3.660
11 O -0.418 6.418
12 N -0.327 5.327
13 C -0.029 4.029
14 C -0.197 4.197
15 C 0.062 3.938
16 H 0.086 0.914
17 N -0.358 5.358
18 C -0.379 4.379
19 H 0.090 0.910
20 C -0.206 4.206
21 N -0.577 5.577
22 Si 0.740 3.260
23 H -0.217 1.217
24 H -0.217 1.217
25 H -0.207 1.207
26 C 0.020 3.980
27 H 0.095 0.905
28 C -0.220 4.220
29 H 0.085 0.915
30 H 0.077 0.923
31 H 0.086 0.914
32 H 0.097 0.903
33 H 0.099 0.901
34 H 0.103 0.897
35 H 0.115 0.885
36 H 0.073 0.927
37 H 0.081 0.919
38 H 0.091 0.909
39 H 0.174 0.826
40 H 0.174 0.826
41 H 0.088 0.912
42 H 0.088 0.912
43 H 0.095 0.905
44 H 0.097 0.903
45 H 0.230 0.770
46 H 0.067 0.933
47 H 0.076 0.924
48 H 0.081 0.919
49 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -16.651 -12.390 -17.274 27.003
hybrid contribution 1.734 -0.375 -0.103 1.777
sum -14.917 -12.765 -17.376 26.218
Atomic orbital electron populations
1.22205 0.95588 1.02503 1.02988 1.21254 0.95158 0.81132 1.03059
1.57875 1.79336 1.24178 1.22666 1.21422 0.97991 0.97677 0.84853
1.22312 0.97248 1.02590 1.01592 1.04429 0.75834 0.74217 0.72671
1.93583 1.64031 1.75823 1.59149 1.93573 1.84217 1.31076 1.83814
1.31223 1.30404 1.12552 1.05658 1.18669 0.81916 0.80582 0.84863
1.90836 1.53795 1.41899 1.55312 1.48455 1.08121 1.51534 1.24619
1.22477 0.88566 0.95814 0.96053 1.23590 0.94168 1.01297 1.00619
1.21176 0.87214 0.93080 0.92308 0.91415 1.42661 1.18170 1.04161
1.70842 1.19234 0.93776 0.92980 1.31871 0.91016 1.24774 0.99019
0.95241 1.01566 1.69658 1.38120 0.98063 1.51847 0.86164 0.83914
0.77168 0.78727 1.21670 1.21707 1.20696 1.22041 0.95213 0.95290
0.85462 0.90493 1.22041 1.02276 0.94230 1.03474 0.91469 0.92313
0.91417 0.90283 0.90070 0.89733 0.88545 0.92693 0.91898 0.90914
0.82603 0.82630 0.91238 0.91173 0.90526 0.90289 0.77041 0.93283
0.92437 0.91875 0.89746
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 32.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16
2 C 0.12 0.73 5.98 -4.04 -0.02 0.70 16
3 N -1.00 -7.96 2.71 -114.38 -0.31 -8.27 16
4 C 0.11 0.67 6.38 -4.04 -0.03 0.64 16
5 C -0.18 -0.84 10.24 37.16 0.38 -0.46 16
6 S 2.64 32.54 4.51 -107.50 -0.48 32.06 16
7 O -0.94 -14.28 16.75 -57.55 -0.96 -15.24 16
8 O -0.94 -14.69 16.53 -57.55 -0.95 -15.64 16
9 C -0.67 -6.84 5.67 36.01 0.20 -6.63 16
10 C 0.55 8.60 7.65 -10.99 -0.08 8.52 16
11 O -0.54 -10.48 14.77 5.56 0.08 -10.40 16
12 N -0.59 -8.97 3.08 -163.01 -0.50 -9.47 16
13 C 0.09 1.12 6.69 -2.53 -0.02 1.11 16
14 C -0.16 -2.37 6.77 -24.58 -0.17 -2.54 16
15 C 0.17 3.24 3.48 -66.10 -0.23 3.01 16
16 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16
17 N -0.72 -16.90 4.95 -51.66 -0.26 -17.15 16
18 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16
19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16
20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16
21 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16
22 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16
23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
26 C 0.12 2.17 3.47 -66.95 -0.23 1.94 16
27 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16
28 C -0.16 -3.08 7.94 37.16 0.29 -2.78 16
29 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16
30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
32 H 0.08 0.28 8.11 -51.92 -0.42 -0.14 16
33 H 0.08 0.47 7.61 -51.93 -0.40 0.07 16
34 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16
35 H 0.10 0.73 6.82 -51.93 -0.35 0.38 16
36 H 0.05 0.27 6.96 -51.93 -0.36 -0.09 16
37 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16
38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
39 H 0.16 1.14 6.66 -51.93 -0.35 0.79 16
40 H 0.16 1.03 8.14 -51.92 -0.42 0.60 16
41 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16
42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
45 H 0.39 9.84 5.06 -40.82 -0.21 9.64 16
46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
47 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16
48 H 0.06 1.21 6.76 -51.93 -0.35 0.86 16
49 H 0.08 1.73 6.78 -51.93 -0.35 1.38 16
LS Contribution 400.97 15.07 6.04 6.04
Total: -1.00 -35.74 400.97 -9.60 -45.34
By element:
Atomic # 1 Polarization: 15.08 SS G_CDS: -8.19 Total: 6.89 kcal
Atomic # 6 Polarization: -4.52 SS G_CDS: 0.23 Total: -4.29 kcal
Atomic # 7 Polarization: -61.04 SS G_CDS: -0.34 Total: -61.38 kcal
Atomic # 8 Polarization: -39.44 SS G_CDS: -1.83 Total: -41.28 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal
Atomic # 16 Polarization: 32.54 SS G_CDS: -0.48 Total: 32.06 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -35.74 -9.60 -45.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571463407.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.010 kcal
(2) G-P(sol) polarization free energy of solvation -35.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.355 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.42 seconds