Wall clock time and date at job start Wed Apr 1 2020 04:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47055 * 2 1 4 4 C 1.46498 * 120.00197 * 275.00255 * 3 2 1 5 5 C 1.53000 * 109.47056 * 274.99786 * 4 3 2 6 6 S 1.65603 * 119.99778 * 95.00039 * 3 2 1 7 7 O 1.42104 * 104.27780 * 333.93151 * 6 3 2 8 8 O 1.42100 * 104.27666 * 206.07306 * 6 3 2 9 9 C 1.81397 * 104.44781 * 90.00083 * 6 3 2 10 10 C 1.50703 * 109.47149 * 180.02562 * 9 6 3 11 11 O 1.21282 * 119.99946 * 359.97438 * 10 9 6 12 12 N 1.34773 * 119.99998 * 180.02562 * 10 9 6 13 13 C 1.47424 * 125.65220 * 359.96798 * 12 10 9 14 14 C 1.54914 * 104.83329 * 155.89586 * 13 12 10 15 15 C 1.55147 * 101.57928 * 37.01130 * 14 13 12 16 16 H 1.09006 * 110.72416 * 82.86303 * 15 14 13 17 17 N 1.46501 * 110.87153 * 206.06148 * 15 14 13 18 18 C 1.36936 * 120.00379 * 268.61457 * 17 15 14 19 19 H 1.07997 * 119.99752 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00367 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00039 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46933 * 90.00000 * 22 20 18 24 24 H 1.48502 * 109.47012 * 210.00129 * 22 20 18 25 25 H 1.48501 * 109.47236 * 329.99774 * 22 20 18 26 26 C 1.47027 * 125.64711 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.88429 * 61.61746 * 26 12 10 28 28 C 1.53005 * 110.00938 * 300.52153 * 26 12 10 29 29 H 1.08991 * 109.46801 * 299.99601 * 1 2 3 30 30 H 1.08997 * 109.46997 * 59.99963 * 1 2 3 31 31 H 1.08998 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47120 * 240.00252 * 2 1 3 33 33 H 1.08997 * 109.46997 * 120.00036 * 2 1 3 34 34 H 1.08997 * 109.46978 * 34.99742 * 4 3 2 35 35 H 1.09000 * 109.47068 * 154.99864 * 4 3 2 36 36 H 1.09004 * 109.47077 * 300.00478 * 5 4 3 37 37 H 1.09000 * 109.47118 * 60.00108 * 5 4 3 38 38 H 1.08998 * 109.47453 * 179.97438 * 5 4 3 39 39 H 1.08992 * 109.47382 * 60.00128 * 9 6 3 40 40 H 1.09004 * 109.47274 * 300.00014 * 9 6 3 41 41 H 1.09000 * 110.36259 * 37.05960 * 13 12 10 42 42 H 1.09001 * 110.46290 * 274.78601 * 13 12 10 43 43 H 1.08997 * 111.00191 * 278.93673 * 14 13 12 44 44 H 1.08996 * 111.00161 * 155.08696 * 14 13 12 45 45 H 0.97002 * 120.00224 * 88.61081 * 17 15 14 46 46 H 0.96998 * 120.00066 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.47215 * 301.80506 * 28 26 12 48 48 H 1.09001 * 109.46642 * 61.80009 * 28 26 12 49 49 H 1.09002 * 109.46991 * 181.80028 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.5152 1.7841 -1.8917 6 16 2.4122 2.1202 1.4287 7 8 1.6209 1.4495 2.4000 8 8 2.2333 3.5055 1.1677 9 6 4.1697 1.7388 1.6661 10 6 4.6505 2.3644 2.9501 11 8 3.8832 3.0048 3.6371 12 7 5.9334 2.2130 3.3344 13 6 6.9682 1.4641 2.5983 14 6 8.3109 2.0801 3.0649 15 6 8.0212 2.3599 4.5632 16 1 8.1727 1.4603 5.1599 17 7 8.8563 3.4560 5.0604 18 6 10.0738 3.1868 5.6265 19 1 10.4182 2.1664 5.7067 20 6 10.8653 4.2255 6.0971 21 7 10.4458 5.4692 5.9989 22 14 12.5258 3.8582 6.8699 23 1 13.5740 3.8667 5.8181 24 1 12.8378 4.8931 7.8881 25 1 12.4857 2.5226 7.5179 26 6 6.5327 2.7673 4.5572 27 1 6.0325 2.3566 5.4342 28 6 6.4105 4.2925 4.5552 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.3618 1.8098 -1.9452 35 1 2.0921 3.1803 -1.0755 36 1 4.3117 2.0829 -1.2103 37 1 3.5813 0.7125 -2.0801 38 1 3.6191 2.3250 -2.8323 39 1 4.7441 2.1375 0.8300 40 1 4.3035 0.6582 1.7164 41 1 6.8420 1.5988 1.5241 42 1 6.9271 0.4054 2.8545 43 1 8.5236 3.0049 2.5287 44 1 9.1279 1.3676 2.9513 45 1 8.5469 4.3726 4.9887 46 1 10.9991 6.1950 6.3274 47 1 6.9017 4.6952 3.6695 48 1 5.3571 4.5724 4.5453 49 1 6.8854 4.6962 5.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571463407.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:13 Heat of formation + Delta-G solvation = -108.325375 kcal Electronic energy + Delta-G solvation = -29991.758532 eV Core-core repulsion = 25887.825268 eV Total energy + Delta-G solvation = -4103.933264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.50203 -39.15581 -38.35973 -38.12153 -37.03978 -36.01980 -33.73989 -32.80531 -32.28257 -31.72375 -29.99451 -29.68686 -26.83350 -25.45179 -24.58563 -24.06321 -23.11390 -21.41689 -20.20959 -19.74259 -19.48598 -18.98037 -18.01847 -17.81949 -17.66652 -17.06044 -16.59674 -16.37864 -16.05515 -15.78638 -15.51907 -15.01730 -14.77918 -14.75606 -14.68442 -14.30414 -13.96852 -13.90958 -13.72513 -13.64458 -13.29627 -13.24509 -13.19936 -13.11848 -12.96443 -12.95855 -12.85490 -12.65188 -12.61593 -12.58982 -12.22946 -12.08762 -12.06755 -11.82638 -11.64610 -11.59980 -11.57729 -11.30404 -10.92479 -10.09082 -9.86554 -9.02922 -7.94187 -5.23631 -0.98554 1.23345 1.48947 1.50846 1.52921 1.59112 1.80297 2.57058 2.76563 3.04347 3.07767 3.38379 3.66512 3.74098 3.76846 3.80359 3.91903 4.10930 4.15096 4.25278 4.30919 4.33139 4.38332 4.49220 4.50645 4.53087 4.59990 4.60712 4.72257 4.73520 4.81868 4.90188 5.00164 5.07719 5.11776 5.17186 5.18919 5.24099 5.34752 5.38365 5.45984 5.46561 5.54529 5.69634 6.26542 6.29977 6.73737 7.34468 8.07634 8.30738 9.29407 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002339 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.313853 B =11968.640275 C =12210.524343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 N -0.990 5.990 4 C 0.099 3.901 5 C -0.178 4.178 6 S 2.636 3.364 7 O -0.977 6.977 8 O -0.985 6.985 9 C -0.653 4.653 10 C 0.542 3.458 11 O -0.590 6.590 12 N -0.594 5.594 13 C 0.097 3.903 14 C -0.147 4.147 15 C 0.166 3.834 16 H 0.074 0.926 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.084 0.916 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.302 1.302 25 H -0.267 1.267 26 C 0.127 3.873 27 H 0.069 0.931 28 C -0.150 4.150 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.193 0.807 40 H 0.203 0.797 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.380 0.620 46 H 0.250 0.750 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.999 -16.899 -21.166 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 N -0.830 5.830 4 C -0.026 4.026 5 C -0.237 4.237 6 S 2.727 3.273 7 O -0.967 6.967 8 O -0.975 6.975 9 C -0.782 4.782 10 C 0.330 3.670 11 O -0.472 6.472 12 N -0.326 5.326 13 C -0.024 4.024 14 C -0.188 4.188 15 C 0.056 3.944 16 H 0.092 0.908 17 N -0.374 5.374 18 C -0.370 4.370 19 H 0.102 0.898 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.229 1.229 25 H -0.192 1.192 26 C 0.022 3.978 27 H 0.087 0.913 28 C -0.208 4.208 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.211 0.789 40 H 0.220 0.780 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.216 0.784 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.880 -16.172 -20.213 30.369 hybrid contribution 1.394 0.704 0.739 1.728 sum -14.486 -15.468 -19.474 28.781 Atomic orbital electron populations 1.22259 0.96454 1.03325 1.01731 1.21569 0.94578 0.80046 1.05127 1.57545 1.79058 1.24925 1.21502 1.21622 1.00158 0.96549 0.84237 1.22330 0.95708 1.03932 1.01729 1.04090 0.76735 0.73304 0.73129 1.93530 1.65897 1.76108 1.61197 1.93514 1.85361 1.34025 1.84554 1.31116 1.28237 1.15254 1.03632 1.19505 0.81442 0.80019 0.86077 1.90826 1.55098 1.44039 1.57252 1.48477 1.08742 1.51486 1.23856 1.22753 0.84996 0.96708 0.97961 1.23395 0.96976 1.01262 0.97133 1.21408 0.86789 0.91607 0.94604 0.90810 1.42847 1.18234 1.04984 1.71376 1.19662 0.94239 0.93247 1.29807 0.89849 1.25572 1.02669 0.95229 1.03406 1.69826 1.39391 0.98900 1.54070 0.85138 0.79962 0.77058 0.77553 1.21365 1.22907 1.19202 1.21770 0.95017 0.93994 0.86984 0.91319 1.21869 1.01133 0.95807 1.02002 0.94717 0.91599 0.89602 0.86442 0.89604 0.87722 0.90597 0.92651 0.90075 0.90107 0.78932 0.77960 0.87140 0.87708 0.92382 0.88697 0.78431 0.94131 0.92963 0.92740 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 10.24 71.98 0.74 -1.33 16 2 C 0.11 0.99 5.98 86.38 0.52 1.51 16 3 N -0.99 -13.33 2.71 -515.78 -1.40 -14.74 16 4 C 0.10 0.99 6.38 86.38 0.55 1.54 16 5 C -0.18 -0.95 10.24 71.98 0.74 -0.21 16 6 S 2.64 62.75 4.51 -56.49 -0.25 62.50 16 7 O -0.98 -30.18 16.75 -127.64 -2.14 -32.32 16 8 O -0.98 -31.73 16.53 -127.64 -2.11 -33.84 16 9 C -0.65 -10.90 5.67 71.24 0.40 -10.50 16 10 C 0.54 15.86 7.65 87.66 0.67 16.54 16 11 O -0.59 -23.32 14.77 -3.03 -0.04 -23.37 16 12 N -0.59 -16.47 3.08 -788.03 -2.43 -18.90 16 13 C 0.10 1.83 6.69 86.86 0.58 2.42 16 14 C -0.15 -4.04 6.77 31.98 0.22 -3.82 16 15 C 0.17 5.96 3.48 46.18 0.16 6.12 16 16 H 0.07 2.56 8.09 -2.38 -0.02 2.54 16 17 N -0.73 -34.88 4.95 -317.34 -1.57 -36.45 16 18 C -0.24 -12.44 9.96 84.03 0.84 -11.61 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.59 13.06 21.65 0.28 -58.30 16 22 Si 0.97 44.78 29.55 68.60 2.03 46.80 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C 0.13 4.44 3.47 45.34 0.16 4.60 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 C -0.15 -5.95 7.94 71.98 0.57 -5.37 16 29 H 0.03 0.62 7.90 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.12 0.21 8.11 -2.38 -0.02 0.19 16 33 H 0.09 0.71 7.61 -2.39 -0.02 0.70 16 34 H 0.10 0.64 8.11 -2.39 -0.02 0.62 16 35 H 0.08 1.10 6.82 -2.39 -0.02 1.08 16 36 H 0.05 0.29 6.96 -2.38 -0.02 0.28 16 37 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.19 1.79 6.66 -2.39 -0.02 1.78 16 40 H 0.20 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.29 7.48 -2.39 -0.02 1.27 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.38 19.78 5.06 -92.71 -0.47 19.31 16 46 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 47 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 48 H 0.05 2.22 6.76 -2.39 -0.02 2.20 16 49 H 0.06 2.66 6.78 -2.39 -0.02 2.64 16 Total: -1.00 -84.18 400.97 -0.56 -84.74 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.47 Total: 27.80 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 6.61 Total: -3.92 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.12 Total: -128.39 kcal Atomic # 8 Polarization: -85.24 SS G_CDS: -4.29 Total: -89.53 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 62.75 SS G_CDS: -0.25 Total: 62.50 kcal Total: -84.18 -0.56 -84.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571463407.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.587 kcal (2) G-P(sol) polarization free energy of solvation -84.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds