Wall clock time and date at job start Wed Apr 1 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99850 * 2 1 4 4 O 1.21278 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99505 * 179.97438 * 3 2 1 6 6 N 1.46905 * 109.46759 * 174.16422 * 5 3 2 7 7 C 1.44053 * 110.99885 * 306.46248 * 6 5 3 8 8 C 1.54757 * 110.37267 * 220.51294 * 7 6 5 9 9 C 1.54932 * 109.76322 * 321.90881 * 8 7 6 10 10 N 1.43613 * 116.04643 * 318.49767 * 9 8 7 11 11 S 1.65596 * 120.56394 * 269.68891 * 10 9 8 12 12 O 1.42105 * 104.27769 * 206.06818 * 11 10 9 13 13 O 1.42104 * 104.27677 * 333.92405 * 11 10 9 14 14 C 1.81396 * 104.45047 * 89.99716 * 11 10 9 15 15 C 1.53008 * 109.47219 * 180.02562 * 14 11 10 16 16 C 1.52995 * 109.47087 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.46954 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99964 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00211 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47056 * 90.00450 * 21 19 17 23 23 H 1.48498 * 109.46993 * 210.00439 * 21 19 17 24 24 H 1.48495 * 109.47095 * 330.00517 * 21 19 17 25 25 C 1.50188 * 118.87248 * 89.66260 * 10 9 8 26 26 C 1.46183 * 111.00353 * 64.17068 * 6 5 3 27 27 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47137 * 300.00388 * 1 2 3 29 29 H 1.09008 * 109.46905 * 60.00214 * 1 2 3 30 30 H 0.97001 * 119.99947 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47215 * 54.16367 * 5 3 2 32 32 H 1.08999 * 109.47623 * 294.15959 * 5 3 2 33 33 H 1.09005 * 109.33668 * 340.91582 * 7 6 5 34 34 H 1.08997 * 109.33601 * 100.58593 * 7 6 5 35 35 H 1.08997 * 109.55226 * 201.72350 * 8 7 6 36 36 H 1.09002 * 109.24670 * 81.90594 * 8 7 6 37 37 H 1.09001 * 108.13198 * 196.85679 * 9 8 7 38 38 H 1.09000 * 108.13728 * 80.14814 * 9 8 7 39 39 H 1.09004 * 109.47297 * 299.99909 * 14 11 10 40 40 H 1.09002 * 109.47321 * 60.00074 * 14 11 10 41 41 H 1.09004 * 109.46725 * 300.00030 * 15 14 11 42 42 H 1.09002 * 109.47101 * 59.99710 * 15 14 11 43 43 H 1.09004 * 109.47324 * 299.99615 * 16 15 14 44 44 H 1.09002 * 109.47427 * 59.99861 * 16 15 14 45 45 H 0.96992 * 120.00256 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.97210 * 51.10116 * 25 10 9 47 47 H 1.09000 * 109.96642 * 172.40441 * 25 10 9 48 48 H 1.09005 * 108.49710 * 25.70545 * 26 6 5 49 49 H 1.09002 * 108.49662 * 268.25525 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 7 4.1356 2.5449 -0.1404 7 6 3.5546 3.1839 -1.2933 8 6 4.6167 4.0347 -2.0302 9 6 5.5429 4.7254 -0.9979 10 7 4.8971 5.2708 0.1631 11 16 4.3549 6.8355 0.1681 12 8 4.3694 7.2070 1.5396 13 8 5.1832 7.4964 -0.7788 14 6 2.6507 6.7260 -0.4438 15 6 2.0333 8.1253 -0.4866 16 6 0.5957 8.0328 -1.0020 17 6 -0.0122 9.4111 -1.0447 18 1 0.5685 10.2672 -0.7348 19 6 -1.3102 9.5789 -1.4785 20 7 -1.8409 10.7816 -1.5153 21 14 -2.3149 8.0979 -2.0139 22 1 -3.0409 7.5429 -0.8433 23 1 -3.2927 8.5122 -3.0519 24 1 -1.4099 7.0613 -2.5720 25 6 4.7213 4.3978 1.3725 26 6 3.7492 3.3587 1.0109 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.9500 -0.8401 -0.0004 31 1 4.0095 0.5653 -0.8322 32 1 4.0089 0.7467 0.9384 33 1 3.1665 2.4229 -1.9704 34 1 2.7389 3.8325 -0.9737 35 1 4.1205 4.7926 -2.6364 36 1 5.2113 3.3876 -2.6750 37 1 6.0710 5.5338 -1.5036 38 1 6.2820 3.9970 -0.6644 39 1 2.6515 6.2988 -1.4466 40 1 2.0660 6.0906 0.2214 41 1 2.0326 8.5529 0.5161 42 1 2.6182 8.7603 -1.1520 43 1 0.5960 7.6050 -2.0046 44 1 0.0111 7.3979 -0.3363 45 1 -2.7539 10.8998 -1.8208 46 1 5.6728 3.9397 1.6425 47 1 4.3417 4.9887 2.2061 48 1 3.6111 2.7006 1.8688 49 1 2.7956 3.8386 0.7908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671676025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:45 Heat of formation + Delta-G solvation = -87.954378 kcal Electronic energy + Delta-G solvation = -30583.560361 eV Core-core repulsion = 26480.510449 eV Total energy + Delta-G solvation = -4103.049911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.90919 -38.68435 -36.94344 -35.77641 -35.43419 -34.81879 -34.71008 -32.74893 -32.15201 -30.13460 -28.30394 -27.54396 -26.05225 -24.99317 -23.60065 -21.90174 -21.32579 -20.57412 -20.25055 -18.61354 -17.72223 -17.64677 -16.87594 -16.70360 -16.30838 -16.15316 -15.77026 -15.40531 -15.23559 -15.05375 -14.66405 -14.26754 -14.14485 -13.95441 -13.76668 -13.21375 -13.01844 -12.86237 -12.69564 -12.51751 -12.29744 -12.24845 -12.07526 -11.92194 -11.88156 -11.80288 -11.56526 -11.48897 -11.23769 -10.92097 -10.90327 -10.83925 -10.70438 -10.50025 -10.02252 -9.81311 -9.64674 -9.55799 -9.22219 -8.92548 -8.67353 -8.53876 -6.04030 -4.02606 0.49198 2.19772 2.75970 2.78648 3.30755 3.37668 3.41942 3.54785 4.04170 4.31685 4.33799 4.45125 4.52003 4.59001 4.79932 4.81813 4.93522 4.95090 5.07972 5.09822 5.12229 5.19067 5.20131 5.30000 5.33096 5.37012 5.42898 5.55985 5.69596 5.73476 5.83223 5.84843 5.92206 5.99839 6.02309 6.14339 6.22250 6.36903 6.57974 6.69037 6.70822 6.75355 7.00906 7.20948 7.34343 7.76612 7.78980 8.52828 9.00769 9.57719 11.09343 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.004079 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.325927 B = 6862.243414 C = 9340.305340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.737 5.737 3 C 0.473 3.527 4 O -0.528 6.528 5 C 0.032 3.968 6 N -0.485 5.485 7 C 0.043 3.957 8 C -0.139 4.139 9 C 0.126 3.874 10 N -0.995 5.995 11 S 2.599 3.401 12 O -0.960 6.960 13 O -0.958 6.958 14 C -0.616 4.616 15 C -0.096 4.096 16 C -0.004 4.004 17 C -0.525 4.525 18 H 0.075 0.925 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.129 3.871 26 C 0.015 3.985 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.401 0.599 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.068 0.932 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.448 -28.694 3.244 31.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.390 5.390 3 C 0.258 3.742 4 O -0.404 6.404 5 C -0.100 4.100 6 N -0.206 5.206 7 C -0.085 4.085 8 C -0.179 4.179 9 C -0.001 4.001 10 N -0.831 5.831 11 S 2.695 3.305 12 O -0.951 6.951 13 O -0.949 6.949 14 C -0.747 4.747 15 C -0.135 4.135 16 C -0.042 4.042 17 C -0.563 4.563 18 H 0.093 0.907 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.190 1.190 25 C 0.005 3.995 26 C -0.114 4.114 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.234 0.766 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.121 0.879 48 H 0.086 0.914 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.950 -27.093 3.438 30.667 hybrid contribution -2.137 -1.796 -0.575 2.850 sum 11.813 -28.889 2.863 31.342 Atomic orbital electron populations 1.21552 0.79648 1.02149 1.02606 1.45976 1.07941 1.08863 1.76189 1.22234 0.91942 0.83941 0.76085 1.90778 1.70484 1.30765 1.48339 1.22616 0.88822 0.93430 1.05137 1.62466 1.54258 0.99944 1.03923 1.22353 0.96148 0.97884 0.92152 1.22814 0.98292 0.99059 0.97771 1.20691 0.94538 0.99132 0.85773 1.57764 1.74100 1.31122 1.20132 1.05381 0.77599 0.72851 0.74680 1.93551 1.87421 1.80966 1.33133 1.93551 1.64652 1.72216 1.64455 1.30706 1.22832 1.08566 1.12644 1.21290 1.00175 0.89427 1.02599 1.19517 0.90582 0.98122 0.96012 1.21151 0.98437 0.92507 1.44194 0.90719 1.25008 0.97624 0.95661 0.95041 1.69912 1.14974 1.21424 1.47705 0.86795 0.80213 0.83607 0.78789 1.20254 1.21294 1.19028 1.21062 1.00485 0.91182 0.86778 1.21708 0.99229 0.96578 0.93854 0.90751 0.92120 0.92137 0.76571 0.87568 0.87462 0.92576 0.91211 0.91514 0.90505 0.90256 0.90101 0.85620 0.85605 0.91149 0.91097 0.96246 0.96653 0.92685 0.89864 0.87867 0.91360 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.70 59.85 0.64 1.17 16 2 N -0.74 -4.20 5.71 -67.07 -0.38 -4.59 16 3 C 0.47 3.98 6.91 -10.99 -0.08 3.90 16 4 O -0.53 -6.89 12.41 5.56 0.07 -6.82 16 5 C 0.03 0.18 5.56 -4.97 -0.03 0.16 16 6 N -0.48 -4.08 4.38 -241.60 -1.06 -5.14 16 7 C 0.04 0.44 4.02 -4.42 -0.02 0.43 16 8 C -0.14 -1.35 6.63 -24.79 -0.16 -1.51 16 9 C 0.13 1.33 5.26 -4.55 -0.02 1.30 16 10 N -1.00 -11.96 2.85 -115.67 -0.33 -12.29 16 11 S 2.60 40.95 5.45 -107.50 -0.59 40.36 16 12 O -0.96 -17.39 16.64 -57.54 -0.96 -18.34 16 13 O -0.96 -17.51 16.56 -57.54 -0.95 -18.46 16 14 C -0.62 -10.06 6.18 37.16 0.23 -9.83 16 15 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16 16 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 17 C -0.52 -15.46 9.66 -34.44 -0.33 -15.79 16 18 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 21 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 25 C 0.13 1.28 6.33 -4.94 -0.03 1.25 16 26 C 0.02 0.15 3.99 -7.17 -0.03 0.12 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.40 0.89 8.83 -40.82 -0.36 0.53 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.40 7.93 -51.93 -0.41 -0.01 16 33 H 0.06 0.55 7.20 -51.93 -0.37 0.18 16 34 H 0.07 0.90 5.77 -51.93 -0.30 0.60 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.91 6.83 -51.93 -0.35 0.56 16 38 H 0.08 0.74 7.95 -51.93 -0.41 0.32 16 39 H 0.13 1.86 8.14 -51.92 -0.42 1.44 16 40 H 0.13 1.90 8.14 -51.92 -0.42 1.48 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 44 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.07 6.95 -51.93 -0.36 0.71 16 48 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 49 H 0.07 0.86 5.52 -51.93 -0.29 0.57 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -38.70 391.23 -10.63 -49.33 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.25 Total: -0.78 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.18 Total: -19.20 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.00 Total: -49.61 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.84 Total: -43.62 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Atomic # 16 Polarization: 40.95 SS G_CDS: -0.59 Total: 40.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.70 -10.63 -49.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671676025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.622 kcal (2) G-P(sol) polarization free energy of solvation -38.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds