Wall clock time and date at job start Wed Apr 1 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99850 * 2 1 4 4 O 1.21278 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99505 * 179.97438 * 3 2 1 6 6 N 1.46905 * 109.46759 * 174.16422 * 5 3 2 7 7 C 1.44053 * 110.99885 * 306.46248 * 6 5 3 8 8 C 1.54757 * 110.37267 * 220.51294 * 7 6 5 9 9 C 1.54932 * 109.76322 * 321.90881 * 8 7 6 10 10 N 1.43613 * 116.04643 * 318.49767 * 9 8 7 11 11 S 1.65596 * 120.56394 * 269.68891 * 10 9 8 12 12 O 1.42105 * 104.27769 * 206.06818 * 11 10 9 13 13 O 1.42104 * 104.27677 * 333.92405 * 11 10 9 14 14 C 1.81396 * 104.45047 * 89.99716 * 11 10 9 15 15 C 1.53008 * 109.47219 * 180.02562 * 14 11 10 16 16 C 1.52995 * 109.47087 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.46954 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99964 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00211 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47056 * 90.00450 * 21 19 17 23 23 H 1.48498 * 109.46993 * 210.00439 * 21 19 17 24 24 H 1.48495 * 109.47095 * 330.00517 * 21 19 17 25 25 C 1.50188 * 118.87248 * 89.66260 * 10 9 8 26 26 C 1.46183 * 111.00353 * 64.17068 * 6 5 3 27 27 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47137 * 300.00388 * 1 2 3 29 29 H 1.09008 * 109.46905 * 60.00214 * 1 2 3 30 30 H 0.97001 * 119.99947 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47215 * 54.16367 * 5 3 2 32 32 H 1.08999 * 109.47623 * 294.15959 * 5 3 2 33 33 H 1.09005 * 109.33668 * 340.91582 * 7 6 5 34 34 H 1.08997 * 109.33601 * 100.58593 * 7 6 5 35 35 H 1.08997 * 109.55226 * 201.72350 * 8 7 6 36 36 H 1.09002 * 109.24670 * 81.90594 * 8 7 6 37 37 H 1.09001 * 108.13198 * 196.85679 * 9 8 7 38 38 H 1.09000 * 108.13728 * 80.14814 * 9 8 7 39 39 H 1.09004 * 109.47297 * 299.99909 * 14 11 10 40 40 H 1.09002 * 109.47321 * 60.00074 * 14 11 10 41 41 H 1.09004 * 109.46725 * 300.00030 * 15 14 11 42 42 H 1.09002 * 109.47101 * 59.99710 * 15 14 11 43 43 H 1.09004 * 109.47324 * 299.99615 * 16 15 14 44 44 H 1.09002 * 109.47427 * 59.99861 * 16 15 14 45 45 H 0.96992 * 120.00256 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.97210 * 51.10116 * 25 10 9 47 47 H 1.09000 * 109.96642 * 172.40441 * 25 10 9 48 48 H 1.09005 * 108.49710 * 25.70545 * 26 6 5 49 49 H 1.09002 * 108.49662 * 268.25525 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 7 4.1356 2.5449 -0.1404 7 6 3.5546 3.1839 -1.2933 8 6 4.6167 4.0347 -2.0302 9 6 5.5429 4.7254 -0.9979 10 7 4.8971 5.2708 0.1631 11 16 4.3549 6.8355 0.1681 12 8 4.3694 7.2070 1.5396 13 8 5.1832 7.4964 -0.7788 14 6 2.6507 6.7260 -0.4438 15 6 2.0333 8.1253 -0.4866 16 6 0.5957 8.0328 -1.0020 17 6 -0.0122 9.4111 -1.0447 18 1 0.5685 10.2672 -0.7348 19 6 -1.3102 9.5789 -1.4785 20 7 -1.8409 10.7816 -1.5153 21 14 -2.3149 8.0979 -2.0139 22 1 -3.0409 7.5429 -0.8433 23 1 -3.2927 8.5122 -3.0519 24 1 -1.4099 7.0613 -2.5720 25 6 4.7213 4.3978 1.3725 26 6 3.7492 3.3587 1.0109 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.9500 -0.8401 -0.0004 31 1 4.0095 0.5653 -0.8322 32 1 4.0089 0.7467 0.9384 33 1 3.1665 2.4229 -1.9704 34 1 2.7389 3.8325 -0.9737 35 1 4.1205 4.7926 -2.6364 36 1 5.2113 3.3876 -2.6750 37 1 6.0710 5.5338 -1.5036 38 1 6.2820 3.9970 -0.6644 39 1 2.6515 6.2988 -1.4466 40 1 2.0660 6.0906 0.2214 41 1 2.0326 8.5529 0.5161 42 1 2.6182 8.7603 -1.1520 43 1 0.5960 7.6050 -2.0046 44 1 0.0111 7.3979 -0.3363 45 1 -2.7539 10.8998 -1.8208 46 1 5.6728 3.9397 1.6425 47 1 4.3417 4.9887 2.2061 48 1 3.6111 2.7006 1.8688 49 1 2.7956 3.8386 0.7908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671676025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:43 Heat of formation + Delta-G solvation = -120.444272 kcal Electronic energy + Delta-G solvation = -30584.969228 eV Core-core repulsion = 26480.510449 eV Total energy + Delta-G solvation = -4104.458779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55155 -39.40782 -38.30105 -37.10275 -36.58556 -36.18998 -35.46507 -34.30379 -33.51876 -30.77749 -30.20792 -28.19595 -26.83066 -25.59812 -25.44529 -22.94795 -22.09869 -21.90313 -21.22364 -19.77738 -19.04508 -18.72728 -18.29327 -17.57283 -17.37006 -17.16285 -16.60098 -16.33737 -16.29362 -16.02163 -15.88100 -15.72021 -15.40147 -14.93386 -14.65050 -14.40986 -14.19031 -13.92467 -13.76405 -13.75188 -13.45395 -13.28509 -13.23144 -13.20327 -13.11958 -12.93462 -12.78063 -12.65261 -12.61972 -12.34942 -12.01911 -11.90782 -11.74376 -11.63256 -11.48151 -11.43277 -11.38069 -11.17029 -10.82803 -10.12777 -9.91740 -9.35746 -8.35070 -6.40366 -0.77950 1.30249 1.31733 1.44140 1.62227 1.64831 2.30376 2.33052 2.75014 2.92020 2.99426 3.10714 3.54425 3.76343 3.83919 3.89712 3.98478 4.16764 4.22137 4.25563 4.36988 4.40787 4.43164 4.51518 4.54852 4.56328 4.60384 4.70252 4.76662 4.82791 4.89116 4.91892 4.95672 4.96851 5.12400 5.17631 5.22728 5.26922 5.34692 5.37685 5.46813 5.56724 5.76935 5.96883 6.02621 6.20463 6.58178 6.66743 7.24038 7.29635 8.81896 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.004079 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.325927 B = 6862.243414 C = 9340.305340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.466 3.534 4 O -0.581 6.581 5 C 0.034 3.966 6 N -0.478 5.478 7 C 0.048 3.952 8 C -0.138 4.138 9 C 0.122 3.878 10 N -0.986 5.986 11 S 2.617 3.383 12 O -0.986 6.986 13 O -0.985 6.985 14 C -0.613 4.613 15 C -0.099 4.099 16 C -0.002 4.002 17 C -0.543 4.543 18 H 0.034 0.966 19 C 0.007 3.993 20 N -0.948 5.948 21 Si 0.950 3.050 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.248 1.248 25 C 0.126 3.874 26 C 0.018 3.982 27 H 0.108 0.892 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.420 0.580 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.023 0.977 45 H 0.268 0.732 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.576 -33.305 3.059 36.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.252 3.748 4 O -0.460 6.460 5 C -0.097 4.097 6 N -0.199 5.199 7 C -0.081 4.081 8 C -0.178 4.178 9 C -0.005 4.005 10 N -0.824 5.824 11 S 2.713 3.287 12 O -0.976 6.976 13 O -0.976 6.976 14 C -0.743 4.743 15 C -0.138 4.138 16 C -0.041 4.041 17 C -0.581 4.581 18 H 0.053 0.947 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.172 1.172 25 C 0.003 3.997 26 C -0.111 4.111 27 H 0.126 0.874 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.257 0.743 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.105 0.895 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.094 -31.751 3.257 35.307 hybrid contribution -2.446 -0.397 -0.480 2.524 sum 12.648 -32.149 2.777 34.659 Atomic orbital electron populations 1.21558 0.80062 1.03761 1.00727 1.45896 1.07819 1.09251 1.74701 1.22762 0.93139 0.83686 0.75180 1.90776 1.71647 1.32689 1.50936 1.22839 0.86806 0.92228 1.07841 1.62459 1.53838 1.00876 1.02700 1.22231 0.95387 0.97633 0.92825 1.22833 0.98245 0.99074 0.97629 1.20876 0.94975 0.99270 0.85372 1.57520 1.73283 1.30020 1.21597 1.04591 0.76843 0.73780 0.73521 1.93512 1.87566 1.82182 1.34346 1.93512 1.65125 1.73832 1.65085 1.30653 1.23783 1.05718 1.14178 1.21154 0.98420 0.92392 1.01876 1.19461 0.92631 0.95277 0.96719 1.21515 0.98750 0.93759 1.44080 0.94738 1.26002 0.98942 0.99081 0.94966 1.70061 1.15737 1.24056 1.48939 0.85671 0.78615 0.79620 0.78856 1.19122 1.20347 1.17186 1.21304 1.02063 0.90764 0.85546 1.21615 0.97621 0.96852 0.95000 0.87369 0.93902 0.94179 0.74273 0.84809 0.84579 0.92315 0.94144 0.92702 0.88102 0.91378 0.87623 0.84087 0.84385 0.91821 0.91670 0.95508 0.95904 0.92273 0.87077 0.88589 0.89488 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.70 127.77 1.37 2.28 16 2 N -0.72 -6.35 5.71 -484.52 -2.77 -9.12 16 3 C 0.47 6.78 6.91 87.66 0.61 7.39 16 4 O -0.58 -14.75 12.41 -3.02 -0.04 -14.79 16 5 C 0.03 0.26 5.56 85.56 0.48 0.73 16 6 N -0.48 -6.54 4.38 -918.30 -4.02 -10.56 16 7 C 0.05 0.90 4.02 87.43 0.35 1.25 16 8 C -0.14 -2.36 6.63 31.85 0.21 -2.15 16 9 C 0.12 2.30 5.26 87.57 0.46 2.76 16 10 N -0.99 -22.26 2.85 -519.86 -1.48 -23.74 16 11 S 2.62 82.42 5.45 -56.49 -0.31 82.11 16 12 O -0.99 -35.92 16.64 -127.65 -2.12 -38.05 16 13 O -0.99 -36.23 16.56 -127.65 -2.11 -38.34 16 14 C -0.61 -20.08 6.18 71.98 0.44 -19.63 16 15 C -0.10 -4.25 5.16 30.60 0.16 -4.09 16 16 C 0.00 -0.12 4.04 29.85 0.12 0.00 16 17 C -0.54 -33.11 9.66 25.60 0.25 -32.87 16 18 H 0.03 2.30 7.99 -2.91 -0.02 2.27 16 19 C 0.01 0.45 5.47 84.65 0.46 0.91 16 20 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 21 Si 0.95 45.99 27.47 68.60 1.88 47.87 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.25 -11.25 6.54 99.48 0.65 -10.59 16 25 C 0.13 2.24 6.33 83.74 0.53 2.77 16 26 C 0.02 0.31 3.99 84.52 0.34 0.65 16 27 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.42 0.31 8.83 -92.71 -0.82 -0.50 16 31 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.14 0.31 7.93 -2.39 -0.02 0.29 16 33 H 0.06 1.03 7.20 -2.38 -0.02 1.02 16 34 H 0.04 1.01 5.77 -2.39 -0.01 1.00 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.47 6.83 -2.39 -0.02 1.45 16 38 H 0.11 1.53 7.95 -2.39 -0.02 1.51 16 39 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 40 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 41 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 42 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.03 1.29 7.20 -2.38 -0.02 1.27 16 44 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 45 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 46 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.10 1.86 6.95 -2.39 -0.02 1.85 16 48 H 0.09 1.14 7.52 -2.38 -0.02 1.13 16 49 H 0.04 1.01 5.52 -2.39 -0.01 0.99 16 Total: -1.00 -87.40 391.23 -4.82 -92.22 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.07 Total: 13.45 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 5.77 Total: -40.00 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -7.97 Total: -104.48 kcal Atomic # 8 Polarization: -86.91 SS G_CDS: -4.28 Total: -91.18 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Atomic # 16 Polarization: 82.42 SS G_CDS: -0.31 Total: 82.11 kcal Total: -87.40 -4.82 -92.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671676025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.224 kcal (2) G-P(sol) polarization free energy of solvation -87.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds