Wall clock time and date at job start Wed Apr 1 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46498 * 119.99594 * 85.00153 * 3 2 1 5 5 C 1.52994 * 109.47296 * 85.00064 * 4 3 2 6 6 S 1.65591 * 119.99950 * 265.00044 * 3 2 1 7 7 O 1.42105 * 104.27572 * 206.07310 * 6 3 2 8 8 O 1.42101 * 104.28133 * 333.92933 * 6 3 2 9 9 C 1.81403 * 104.45164 * 90.00009 * 6 3 2 10 10 C 1.50694 * 109.47332 * 179.97438 * 9 6 3 11 11 O 1.21287 * 119.99892 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00163 * 180.02562 * 10 9 6 13 13 C 1.46495 * 119.99962 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47225 * 180.02562 * 13 12 10 15 15 H 1.09008 * 112.84414 * 314.66879 * 14 13 12 16 16 C 1.53774 * 113.61562 * 85.85895 * 14 13 12 17 17 C 1.53955 * 87.02049 * 139.95468 * 16 14 13 18 18 H 1.08994 * 113.67077 * 220.06745 * 17 16 14 19 19 N 1.46508 * 113.61137 * 89.19878 * 17 16 14 20 20 C 1.36934 * 119.99751 * 107.47088 * 19 17 16 21 21 H 1.08007 * 120.00112 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99970 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99607 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00118 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47452 * 59.99669 * 24 22 20 26 26 H 1.48493 * 109.47235 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46917 * 300.00082 * 24 22 20 28 28 C 1.53777 * 113.61945 * 183.47301 * 14 13 12 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.08999 * 109.46835 * 205.00119 * 4 3 2 35 35 H 1.09001 * 109.47298 * 324.99692 * 4 3 2 36 36 H 1.09006 * 109.47261 * 180.02562 * 5 4 3 37 37 H 1.08999 * 109.47223 * 299.99818 * 5 4 3 38 38 H 1.09001 * 109.47250 * 59.99599 * 5 4 3 39 39 H 1.08999 * 109.46945 * 300.00254 * 9 6 3 40 40 H 1.08999 * 109.46458 * 59.99892 * 9 6 3 41 41 H 0.96995 * 120.00008 * 359.97438 * 12 10 9 42 42 H 1.08999 * 109.47537 * 299.99872 * 13 12 10 43 43 H 1.08998 * 109.47658 * 59.99969 * 13 12 10 44 44 H 1.08994 * 113.61826 * 254.53209 * 16 14 13 45 45 H 1.09002 * 113.61545 * 25.44268 * 16 14 13 46 46 H 0.97000 * 119.99699 * 287.46785 * 19 17 16 47 47 H 0.97005 * 119.99945 * 179.97438 * 23 22 20 48 48 H 1.09011 * 113.61163 * 334.56656 * 28 14 13 49 49 H 1.08993 * 113.61750 * 105.46242 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.5151 1.7838 1.8918 6 16 2.4122 2.1202 -1.4286 7 8 3.3703 3.1035 -1.0620 8 8 2.7577 1.0477 -2.2944 9 6 0.8700 2.9055 -1.9723 10 6 1.1033 3.6197 -3.2785 11 8 2.2017 3.6004 -3.7925 12 7 0.0913 4.2800 -3.8757 13 6 0.3180 4.9738 -5.1459 14 6 -0.9823 5.6374 -5.6038 15 1 -1.8477 4.9809 -5.5115 16 6 -1.2039 7.0364 -5.0053 17 6 -1.7338 7.4562 -6.3885 18 1 -1.4141 8.4519 -6.6958 19 7 -3.1741 7.2448 -6.5540 20 6 -4.0260 8.3168 -6.5706 21 1 -3.6361 9.3182 -6.4621 22 6 -5.3905 8.1166 -6.7280 23 7 -5.8654 6.8963 -6.8617 24 14 -6.5526 9.5789 -6.7514 25 1 -6.1906 10.4811 -7.8740 26 1 -7.9469 9.1004 -6.9301 27 1 -6.4441 10.3180 -5.4678 28 6 -0.8738 6.3245 -6.9752 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0922 3.1802 1.0757 35 1 1.3617 1.8097 1.9453 36 1 3.6190 2.3247 2.8325 37 1 3.5812 0.7123 2.0800 38 1 4.3117 2.0828 1.2104 39 1 0.1020 2.1438 -2.1063 40 1 0.5428 3.6229 -1.2197 41 1 -0.7872 4.2951 -3.4649 42 1 1.0864 5.7352 -5.0120 43 1 0.6448 4.2564 -5.8986 44 1 -1.9604 7.0611 -4.2210 45 1 -0.2805 7.5406 -4.7202 46 1 -3.5241 6.3455 -6.6519 47 1 -6.8191 6.7563 -6.9713 48 1 0.1402 6.6336 -7.2296 49 1 -1.3640 5.7752 -7.7788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688947608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:38 Heat of formation + Delta-G solvation = -106.624291 kcal Electronic energy + Delta-G solvation = -28639.759600 eV Core-core repulsion = 24535.900100 eV Total energy + Delta-G solvation = -4103.859499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16236 -39.94523 -38.36723 -38.14200 -37.06102 -36.17832 -35.06017 -32.84220 -32.39297 -31.52862 -29.71355 -28.37364 -26.45081 -25.66847 -24.59289 -23.36685 -23.03767 -22.02982 -19.97707 -19.77837 -19.35292 -18.98716 -18.24922 -17.80742 -17.64380 -16.96712 -16.70298 -16.53116 -16.03634 -15.76967 -15.68413 -15.09318 -14.99845 -14.80889 -14.76624 -14.64439 -14.31799 -13.99631 -13.79755 -13.62096 -13.30151 -13.25973 -13.20831 -12.98070 -12.94502 -12.92598 -12.67090 -12.64571 -12.61119 -12.26273 -12.20250 -12.08307 -11.85239 -11.77444 -11.61155 -11.49514 -11.32971 -10.96050 -10.80494 -10.27682 -10.10462 -9.00074 -7.95483 -5.23564 -0.98691 1.21414 1.48478 1.50524 1.55174 1.56657 1.96357 2.55831 2.79031 3.03992 3.27278 3.37318 3.69484 3.73497 3.76078 3.81463 3.85291 4.13090 4.13109 4.23407 4.29167 4.30692 4.37602 4.47571 4.51477 4.58207 4.68988 4.70399 4.71193 4.88806 4.92464 4.98184 5.05883 5.07807 5.09738 5.17079 5.32739 5.33116 5.36701 5.42495 5.44683 5.52306 5.64786 5.67295 6.19426 6.28136 6.87525 7.33461 8.10393 8.32932 9.27388 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.001908 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.837492 B =14671.870502 C =15275.056560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 N -0.992 5.992 4 C 0.110 3.890 5 C -0.178 4.178 6 S 2.637 3.363 7 O -0.978 6.978 8 O -0.983 6.983 9 C -0.663 4.663 10 C 0.530 3.470 11 O -0.589 6.589 12 N -0.698 5.698 13 C 0.130 3.870 14 C -0.102 4.102 15 H 0.087 0.913 16 C -0.154 4.154 17 C 0.143 3.857 18 H 0.059 0.941 19 N -0.719 5.719 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.278 1.278 28 C -0.136 4.136 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.195 0.805 40 H 0.200 0.800 41 H 0.420 0.580 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.104 0.896 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.692 -14.014 19.939 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 N -0.832 5.832 4 C -0.014 4.014 5 C -0.237 4.237 6 S 2.729 3.271 7 O -0.968 6.968 8 O -0.973 6.973 9 C -0.792 4.792 10 C 0.315 3.685 11 O -0.471 6.471 12 N -0.349 5.349 13 C 0.007 3.993 14 C -0.121 4.121 15 H 0.105 0.895 16 C -0.194 4.194 17 C 0.033 3.967 18 H 0.077 0.923 19 N -0.357 5.357 20 C -0.375 4.375 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.204 1.204 28 C -0.175 4.175 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.212 0.788 40 H 0.217 0.783 41 H 0.258 0.742 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.123 0.877 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.192 -13.828 19.150 28.085 hybrid contribution -1.969 0.524 -0.130 2.042 sum 13.223 -13.304 19.020 26.714 Atomic orbital electron populations 1.22337 0.94432 1.03910 1.03138 1.21615 0.95409 0.80517 1.04950 1.57552 1.82167 1.22818 1.20637 1.21547 0.99060 0.96344 0.84428 1.22251 0.97239 1.02766 1.01434 1.04055 0.76229 0.73667 0.73182 1.93535 1.57331 1.63490 1.82407 1.93514 1.82094 1.54360 1.67319 1.31149 1.27740 1.15570 1.04770 1.19764 0.84449 0.78877 0.85381 1.90844 1.25432 1.63696 1.67139 1.45849 1.13503 1.51513 1.24003 1.21501 0.97447 0.96021 0.84369 1.22509 0.96278 0.95841 0.97439 0.89508 1.23748 1.00788 0.96011 0.98873 1.21415 0.83343 0.96914 0.95017 0.92300 1.42283 1.01272 1.05884 1.86286 1.19624 0.88729 0.88732 1.40425 0.90642 1.25535 0.98588 0.98949 1.03608 1.69796 1.12726 1.20866 1.58443 0.85233 0.77714 0.78808 0.78118 1.20608 1.22275 1.20377 1.23359 1.00939 0.97510 0.95737 0.90066 0.90434 0.92572 0.90263 0.87844 0.89664 0.86765 0.89730 0.91580 0.94515 0.78766 0.78301 0.74215 0.90858 0.91331 0.92900 0.89059 0.79288 0.94015 0.87749 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 10.24 71.98 0.74 -0.16 16 2 C 0.10 0.90 6.38 86.38 0.55 1.45 16 3 N -0.99 -12.29 2.71 -515.79 -1.40 -13.69 16 4 C 0.11 0.95 5.98 86.38 0.52 1.47 16 5 C -0.18 -1.95 10.24 71.98 0.74 -1.21 16 6 S 2.64 56.47 4.51 -56.49 -0.25 56.21 16 7 O -0.98 -28.02 16.75 -127.64 -2.14 -30.16 16 8 O -0.98 -28.65 16.53 -127.64 -2.11 -30.76 16 9 C -0.66 -9.15 6.66 71.23 0.47 -8.67 16 10 C 0.53 12.61 7.85 87.65 0.69 13.30 16 11 O -0.59 -19.78 15.86 -3.05 -0.05 -19.82 16 12 N -0.70 -14.42 5.56 -463.07 -2.57 -17.00 16 13 C 0.13 3.10 5.50 86.38 0.48 3.58 16 14 C -0.10 -2.70 3.63 -10.27 -0.04 -2.74 16 15 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 16 C -0.15 -4.57 7.44 31.18 0.23 -4.34 16 17 C 0.14 5.25 4.57 45.57 0.21 5.46 16 18 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 19 N -0.72 -34.43 5.31 -320.15 -1.70 -36.13 16 20 C -0.24 -13.05 9.97 84.03 0.84 -12.22 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 23 N -0.97 -57.29 13.06 21.65 0.28 -57.01 16 24 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 C -0.14 -4.00 7.39 31.12 0.23 -3.77 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.26 6.96 -2.39 -0.02 0.25 16 32 H 0.08 1.01 6.82 -2.39 -0.02 0.99 16 33 H 0.10 0.56 8.11 -2.39 -0.02 0.54 16 34 H 0.09 0.69 7.61 -2.39 -0.02 0.67 16 35 H 0.11 0.25 8.11 -2.39 -0.02 0.23 16 36 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.04 0.62 7.90 -2.39 -0.02 0.60 16 39 H 0.20 1.26 6.96 -2.39 -0.02 1.25 16 40 H 0.20 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.42 6.43 8.47 -92.71 -0.79 5.65 16 42 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 2.34 7.92 -2.39 -0.02 2.32 16 46 H 0.37 19.17 7.90 -92.71 -0.73 18.44 16 47 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 48 H 0.10 2.54 8.10 -2.38 -0.02 2.53 16 49 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -81.71 412.74 -2.37 -84.08 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.57 Total: 28.94 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 6.12 Total: -11.53 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.39 Total: -123.83 kcal Atomic # 8 Polarization: -76.45 SS G_CDS: -4.30 Total: -80.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 56.47 SS G_CDS: -0.25 Total: 56.21 kcal Total: -81.71 -2.37 -84.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688947608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.548 kcal (2) G-P(sol) polarization free energy of solvation -81.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds