Wall clock time and date at job start Wed Apr 1 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47293 * 2 1 4 4 C 1.46496 * 120.00077 * 275.00600 * 3 2 1 5 5 C 1.53002 * 109.47019 * 274.99483 * 4 3 2 6 6 S 1.65599 * 119.99910 * 94.99888 * 3 2 1 7 7 O 1.42107 * 104.27883 * 333.93227 * 6 3 2 8 8 O 1.42098 * 104.27876 * 206.07561 * 6 3 2 9 9 C 1.81402 * 104.45069 * 90.00400 * 6 3 2 10 10 C 1.50700 * 109.47290 * 180.02562 * 9 6 3 11 11 O 1.21285 * 120.00012 * 359.97438 * 10 9 6 12 12 N 1.34771 * 119.99719 * 180.02562 * 10 9 6 13 13 C 1.46497 * 120.00178 * 359.97438 * 12 10 9 14 14 C 1.46506 * 119.99691 * 179.97438 * 12 10 9 15 15 C 1.52998 * 109.46931 * 81.84834 * 14 12 10 16 16 H 1.09004 * 112.74078 * 290.24140 * 15 14 12 17 17 C 1.53504 * 113.51964 * 159.45267 * 15 14 12 18 18 C 1.53754 * 83.25683 * 218.97425 * 17 15 14 19 19 N 1.47064 * 87.89064 * 26.23675 * 18 17 15 20 20 C 1.36934 * 136.05996 * 152.95987 * 19 18 17 21 21 H 1.08002 * 120.00492 * 138.25985 * 20 19 18 22 22 C 1.38815 * 119.99798 * 318.53738 * 20 19 18 23 23 N 1.31622 * 120.00028 * 172.33455 * 22 20 19 24 24 Si 1.86798 * 120.00129 * 352.33962 * 22 20 19 25 25 H 1.48497 * 109.47621 * 86.74015 * 24 22 20 26 26 H 1.48497 * 109.47174 * 206.74497 * 24 22 20 27 27 H 1.48507 * 109.47048 * 326.74175 * 24 22 20 28 28 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47270 * 299.99555 * 1 2 3 30 30 H 1.09001 * 109.47378 * 60.00109 * 1 2 3 31 31 H 1.09003 * 109.47270 * 240.00445 * 2 1 3 32 32 H 1.09001 * 109.47378 * 119.99891 * 2 1 3 33 33 H 1.09001 * 109.47720 * 34.99409 * 4 3 2 34 34 H 1.08998 * 109.47561 * 154.99833 * 4 3 2 35 35 H 1.09006 * 109.47156 * 300.00178 * 5 4 3 36 36 H 1.09004 * 109.47323 * 59.99588 * 5 4 3 37 37 H 1.08996 * 109.47401 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47112 * 59.99817 * 9 6 3 39 39 H 1.09002 * 109.46923 * 300.00353 * 9 6 3 40 40 H 1.09005 * 109.47113 * 275.44750 * 13 12 10 41 41 H 1.08990 * 109.47609 * 35.45112 * 13 12 10 42 42 H 1.09005 * 109.47091 * 155.45967 * 13 12 10 43 43 H 1.09000 * 109.47003 * 321.84744 * 14 12 10 44 44 H 1.08997 * 109.47057 * 201.84578 * 14 12 10 45 45 H 1.09004 * 114.20264 * 332.73052 * 17 15 14 46 46 H 1.09002 * 114.20603 * 105.35415 * 17 15 14 47 47 H 1.08997 * 113.46467 * 271.50203 * 18 17 15 48 48 H 1.08997 * 113.55204 * 140.99065 * 18 17 15 49 49 H 0.96996 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 -1.2638 5 6 3.5151 1.7840 -1.8918 6 16 2.4122 2.1202 1.4287 7 8 1.6208 1.4495 2.4000 8 8 2.2333 3.5055 1.1677 9 6 4.1697 1.7389 1.6661 10 6 4.6505 2.3645 2.9501 11 8 3.8832 3.0049 3.6371 12 7 5.9334 2.2131 3.3343 13 6 6.8603 1.4400 2.5041 14 6 6.4009 2.8217 4.5823 15 6 6.0235 1.9223 5.7610 16 1 4.9503 1.9052 5.9513 17 6 6.8635 2.1778 7.0201 18 6 6.8020 0.6472 7.1517 19 7 6.6276 0.5831 5.6928 20 6 6.9016 -0.3258 4.7060 21 1 6.1828 -0.5022 3.9195 22 6 8.1009 -1.0247 4.7197 23 7 8.3022 -2.0032 3.8627 24 14 9.4290 -0.5767 5.9545 25 1 9.1933 -1.3110 7.2235 26 1 10.7588 -0.9476 5.4076 27 1 9.3908 0.8850 6.2141 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8098 -1.9453 34 1 2.0921 3.1803 -1.0756 35 1 4.3117 2.0830 -1.2104 36 1 3.5813 0.7124 -2.0801 37 1 3.6194 2.3256 -2.8319 38 1 4.7441 2.1375 0.8299 39 1 4.3035 0.6583 1.7164 40 1 6.7657 0.3808 2.7437 41 1 6.6233 1.5971 1.4520 42 1 7.8818 1.7666 2.6993 43 1 5.9344 3.7989 4.7069 44 1 7.4840 2.9380 4.5463 45 1 7.8595 2.5729 6.8202 46 1 6.3362 2.7168 7.8073 47 1 5.9342 0.2939 7.7085 48 1 7.7350 0.2019 7.4973 49 1 9.1403 -2.4913 3.8720 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691402713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:54 Heat of formation + Delta-G solvation = -30.636753 kcal Electronic energy + Delta-G solvation = -30955.395732 eV Core-core repulsion = 26854.831299 eV Total energy + Delta-G solvation = -4100.564433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.80768 -38.23757 -37.35180 -37.07722 -35.78479 -35.02341 -32.59365 -32.15385 -30.82634 -28.98255 -28.84790 -27.64599 -25.90908 -23.91565 -23.38982 -22.81180 -22.27173 -19.60808 -18.99409 -18.57970 -17.89974 -17.37949 -16.78169 -16.66171 -16.25160 -15.76176 -15.36016 -15.10769 -14.92708 -14.32488 -14.26082 -14.01696 -13.60814 -13.50214 -13.26918 -13.14057 -12.97030 -12.67712 -12.62052 -12.30716 -12.17608 -11.99321 -11.97111 -11.93879 -11.91252 -11.81905 -11.59948 -11.24973 -11.17487 -11.13369 -10.99002 -10.91816 -10.78730 -10.54232 -10.27552 -9.93276 -9.80175 -9.59012 -9.27719 -8.61633 -8.12772 -6.81627 -6.12697 -3.63142 0.19842 2.63822 2.73301 3.24930 3.29251 3.35637 3.41241 3.92596 4.17281 4.34629 4.40906 4.60094 4.79654 4.81501 4.88846 4.93497 5.09248 5.12782 5.16872 5.17686 5.28302 5.31537 5.37778 5.52491 5.57033 5.67708 5.71874 5.74222 5.79645 5.92814 5.98097 6.02419 6.05396 6.12331 6.13589 6.22647 6.36149 6.43559 6.44256 6.48046 6.82052 6.87021 7.07336 7.50268 7.70845 8.17545 8.28739 8.51267 9.46973 10.37305 11.01123 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003497 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.854521 B = 8005.282365 C = 8586.164050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 N -1.003 6.003 4 C 0.107 3.893 5 C -0.179 4.179 6 S 2.642 3.358 7 O -0.936 6.936 8 O -0.945 6.945 9 C -0.668 4.668 10 C 0.539 3.461 11 O -0.555 6.555 12 N -0.571 5.571 13 C 0.062 3.938 14 C 0.119 3.881 15 C 0.122 3.878 16 H 0.060 0.940 17 C -0.155 4.155 18 C 0.097 3.903 19 N -0.615 5.615 20 C -0.226 4.226 21 H 0.081 0.919 22 C 0.037 3.963 23 N -0.908 5.908 24 Si 0.895 3.105 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.266 1.266 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.116 0.884 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 6.371 -11.148 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 N -0.841 5.841 4 C -0.018 4.018 5 C -0.238 4.238 6 S 2.731 3.269 7 O -0.926 6.926 8 O -0.935 6.935 9 C -0.796 4.796 10 C 0.325 3.675 11 O -0.436 6.436 12 N -0.300 5.300 13 C -0.079 4.079 14 C -0.004 4.004 15 C 0.015 3.985 16 H 0.078 0.922 17 C -0.194 4.194 18 C -0.027 4.027 19 N -0.343 5.343 20 C -0.353 4.353 21 H 0.099 0.901 22 C -0.164 4.164 23 N -0.549 5.549 24 Si 0.726 3.274 25 H -0.214 1.214 26 H -0.230 1.230 27 H -0.191 1.191 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.134 0.866 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.118 6.868 -10.524 14.961 hybrid contribution 1.651 -0.586 0.360 1.788 sum -6.467 6.283 -10.164 13.587 Atomic orbital electron populations 1.22197 0.95738 1.02444 1.02757 1.21264 0.94971 0.81110 1.03356 1.57859 1.79481 1.24178 1.22550 1.21385 0.97917 0.97495 0.85003 1.22318 0.97327 1.02750 1.01396 1.04335 0.76027 0.74028 0.72556 1.93583 1.64317 1.75684 1.59043 1.93538 1.84581 1.31401 1.84007 1.31160 1.29462 1.13230 1.05747 1.18970 0.83150 0.80510 0.84912 1.90784 1.54016 1.42961 1.55876 1.47419 1.08970 1.50790 1.22804 1.22524 0.92658 1.01049 0.91710 1.21889 0.99425 0.95951 0.83133 1.22726 0.96892 0.86779 0.92067 0.92202 1.23579 1.00325 0.97536 0.97930 1.22714 0.98311 0.93025 0.88653 1.45720 1.72686 1.14715 1.01168 1.18292 0.99037 1.14850 1.03086 0.90143 1.25439 0.96987 0.97176 0.96763 1.69731 1.26027 1.21801 1.37369 0.86560 0.80730 0.79394 0.80723 1.21368 1.22985 1.19063 0.91440 0.91544 0.92489 0.90276 0.89797 0.89902 0.88756 0.92644 0.91754 0.91135 0.82895 0.82205 0.86585 0.93591 0.91165 0.90824 0.90109 0.90064 0.91756 0.94190 0.94224 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.15 0.38 -1.22 16 2 C 0.12 1.11 5.98 -4.04 -0.02 1.09 16 3 N -1.00 -10.78 2.71 -114.38 -0.31 -11.09 16 4 C 0.11 0.90 6.38 -4.04 -0.03 0.88 16 5 C -0.18 -1.25 10.24 37.16 0.38 -0.87 16 6 S 2.64 40.05 4.51 -107.50 -0.48 39.56 16 7 O -0.94 -17.39 16.75 -57.55 -0.96 -18.35 16 8 O -0.95 -16.53 16.53 -57.55 -0.95 -17.48 16 9 C -0.67 -9.40 5.28 36.01 0.19 -9.21 16 10 C 0.54 10.05 7.62 -10.99 -0.08 9.97 16 11 O -0.56 -11.98 15.58 5.55 0.09 -11.90 16 12 N -0.57 -10.44 2.57 -181.57 -0.47 -10.90 16 13 C 0.06 1.06 8.92 59.85 0.53 1.60 16 14 C 0.12 2.17 5.39 -4.04 -0.02 2.14 16 15 C 0.12 2.44 4.27 -72.39 -0.31 2.13 16 16 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.15 -2.72 8.03 -26.08 -0.21 -2.93 16 18 C 0.10 2.02 7.52 -8.37 -0.06 1.96 16 19 N -0.61 -14.15 3.00 -176.82 -0.53 -14.68 16 20 C -0.23 -5.74 7.83 -15.06 -0.12 -5.86 16 21 H 0.08 2.18 6.32 -52.49 -0.33 1.85 16 22 C 0.04 0.99 5.50 -17.43 -0.10 0.89 16 23 N -0.91 -25.17 13.97 55.49 0.78 -24.39 16 24 Si 0.90 21.29 25.14 -169.99 -4.27 17.02 16 25 H -0.29 -6.92 7.02 56.52 0.40 -6.53 16 26 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.27 -6.06 6.86 56.52 0.39 -5.67 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 33 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.09 0.88 6.82 -51.93 -0.35 0.52 16 35 H 0.05 0.40 6.96 -51.93 -0.36 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.15 1.61 6.23 -51.92 -0.32 1.28 16 39 H 0.16 2.02 8.11 -51.92 -0.42 1.60 16 40 H 0.12 2.38 4.39 -51.93 -0.23 2.15 16 41 H 0.05 0.62 6.67 -51.93 -0.35 0.27 16 42 H 0.07 1.18 7.77 -51.93 -0.40 0.78 16 43 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 44 H 0.08 1.39 7.62 -51.93 -0.40 0.99 16 45 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.04 0.86 4.72 -51.93 -0.25 0.61 16 49 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -34.54 393.12 -8.64 -43.18 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.98 Total: 2.54 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.53 Total: 0.57 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.53 Total: -61.06 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -1.83 Total: -47.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.27 Total: 17.02 kcal Atomic # 16 Polarization: 40.05 SS G_CDS: -0.48 Total: 39.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.54 -8.64 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691402713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.542 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds