Wall clock time and date at job start Wed Apr 1 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47293 * 2 1 4 4 C 1.46496 * 120.00077 * 275.00600 * 3 2 1 5 5 C 1.53002 * 109.47019 * 274.99483 * 4 3 2 6 6 S 1.65599 * 119.99910 * 94.99888 * 3 2 1 7 7 O 1.42107 * 104.27883 * 333.93227 * 6 3 2 8 8 O 1.42098 * 104.27876 * 206.07561 * 6 3 2 9 9 C 1.81402 * 104.45069 * 90.00400 * 6 3 2 10 10 C 1.50700 * 109.47290 * 180.02562 * 9 6 3 11 11 O 1.21285 * 120.00012 * 359.97438 * 10 9 6 12 12 N 1.34771 * 119.99719 * 180.02562 * 10 9 6 13 13 C 1.46497 * 120.00178 * 359.97438 * 12 10 9 14 14 C 1.46506 * 119.99691 * 179.97438 * 12 10 9 15 15 C 1.52998 * 109.46931 * 81.84834 * 14 12 10 16 16 H 1.09004 * 112.74078 * 290.24140 * 15 14 12 17 17 C 1.53504 * 113.51964 * 159.45267 * 15 14 12 18 18 C 1.53754 * 83.25683 * 218.97425 * 17 15 14 19 19 N 1.47064 * 87.89064 * 26.23675 * 18 17 15 20 20 C 1.36934 * 136.05996 * 152.95987 * 19 18 17 21 21 H 1.08002 * 120.00492 * 138.25985 * 20 19 18 22 22 C 1.38815 * 119.99798 * 318.53738 * 20 19 18 23 23 N 1.31622 * 120.00028 * 172.33455 * 22 20 19 24 24 Si 1.86798 * 120.00129 * 352.33962 * 22 20 19 25 25 H 1.48497 * 109.47621 * 86.74015 * 24 22 20 26 26 H 1.48497 * 109.47174 * 206.74497 * 24 22 20 27 27 H 1.48507 * 109.47048 * 326.74175 * 24 22 20 28 28 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47270 * 299.99555 * 1 2 3 30 30 H 1.09001 * 109.47378 * 60.00109 * 1 2 3 31 31 H 1.09003 * 109.47270 * 240.00445 * 2 1 3 32 32 H 1.09001 * 109.47378 * 119.99891 * 2 1 3 33 33 H 1.09001 * 109.47720 * 34.99409 * 4 3 2 34 34 H 1.08998 * 109.47561 * 154.99833 * 4 3 2 35 35 H 1.09006 * 109.47156 * 300.00178 * 5 4 3 36 36 H 1.09004 * 109.47323 * 59.99588 * 5 4 3 37 37 H 1.08996 * 109.47401 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47112 * 59.99817 * 9 6 3 39 39 H 1.09002 * 109.46923 * 300.00353 * 9 6 3 40 40 H 1.09005 * 109.47113 * 275.44750 * 13 12 10 41 41 H 1.08990 * 109.47609 * 35.45112 * 13 12 10 42 42 H 1.09005 * 109.47091 * 155.45967 * 13 12 10 43 43 H 1.09000 * 109.47003 * 321.84744 * 14 12 10 44 44 H 1.08997 * 109.47057 * 201.84578 * 14 12 10 45 45 H 1.09004 * 114.20264 * 332.73052 * 17 15 14 46 46 H 1.09002 * 114.20603 * 105.35415 * 17 15 14 47 47 H 1.08997 * 113.46467 * 271.50203 * 18 17 15 48 48 H 1.08997 * 113.55204 * 140.99065 * 18 17 15 49 49 H 0.96996 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 -1.2638 5 6 3.5151 1.7840 -1.8918 6 16 2.4122 2.1202 1.4287 7 8 1.6208 1.4495 2.4000 8 8 2.2333 3.5055 1.1677 9 6 4.1697 1.7389 1.6661 10 6 4.6505 2.3645 2.9501 11 8 3.8832 3.0049 3.6371 12 7 5.9334 2.2131 3.3343 13 6 6.8603 1.4400 2.5041 14 6 6.4009 2.8217 4.5823 15 6 6.0235 1.9223 5.7610 16 1 4.9503 1.9052 5.9513 17 6 6.8635 2.1778 7.0201 18 6 6.8020 0.6472 7.1517 19 7 6.6276 0.5831 5.6928 20 6 6.9016 -0.3258 4.7060 21 1 6.1828 -0.5022 3.9195 22 6 8.1009 -1.0247 4.7197 23 7 8.3022 -2.0032 3.8627 24 14 9.4290 -0.5767 5.9545 25 1 9.1933 -1.3110 7.2235 26 1 10.7588 -0.9476 5.4076 27 1 9.3908 0.8850 6.2141 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8098 -1.9453 34 1 2.0921 3.1803 -1.0756 35 1 4.3117 2.0830 -1.2104 36 1 3.5813 0.7124 -2.0801 37 1 3.6194 2.3256 -2.8319 38 1 4.7441 2.1375 0.8299 39 1 4.3035 0.6583 1.7164 40 1 6.7657 0.3808 2.7437 41 1 6.6233 1.5971 1.4520 42 1 7.8818 1.7666 2.6993 43 1 5.9344 3.7989 4.7069 44 1 7.4840 2.9380 4.5463 45 1 7.8595 2.5729 6.8202 46 1 6.3362 2.7168 7.8073 47 1 5.9342 0.2939 7.7085 48 1 7.7350 0.2019 7.4973 49 1 9.1403 -2.4913 3.8720 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691402713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:53 Heat of formation + Delta-G solvation = -56.066535 kcal Electronic energy + Delta-G solvation = -30956.498450 eV Core-core repulsion = 26854.831299 eV Total energy + Delta-G solvation = -4101.667151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29880 -39.84441 -38.35674 -38.14814 -37.07253 -36.50272 -34.54343 -32.84255 -32.13812 -30.60295 -29.71747 -29.13975 -27.34242 -25.18752 -24.62052 -24.28677 -23.12076 -21.11707 -20.47683 -19.75640 -19.25356 -18.91993 -18.01659 -17.88065 -17.51834 -17.21685 -16.87058 -16.55112 -16.18870 -15.71042 -15.26973 -15.07429 -14.94690 -14.78431 -14.58495 -14.39546 -14.31668 -14.03775 -13.79834 -13.62613 -13.38525 -13.26392 -13.20926 -13.12562 -12.98370 -12.89018 -12.77597 -12.67548 -12.63810 -12.59872 -12.27654 -12.12145 -11.92440 -11.84287 -11.61823 -11.58998 -11.42006 -11.25573 -10.55981 -10.10363 -9.62997 -8.66604 -8.12609 -5.61738 -0.96501 1.29911 1.36119 1.42812 1.53847 1.59654 1.96958 2.46541 2.74364 3.03931 3.04684 3.17882 3.21404 3.72843 3.75783 3.77394 4.06993 4.17119 4.22838 4.28724 4.29212 4.40177 4.47422 4.50856 4.51691 4.57836 4.62656 4.68171 4.69886 4.77479 4.80361 4.88084 4.90007 4.99038 5.05776 5.09010 5.32063 5.33197 5.36016 5.42826 5.44943 5.54422 5.68194 5.72310 6.19760 6.28114 6.54625 6.85420 7.47864 8.47064 9.03879 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003497 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.854521 B = 8005.282365 C = 8586.164050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 N -0.991 5.991 4 C 0.100 3.900 5 C -0.180 4.180 6 S 2.645 3.355 7 O -0.981 6.981 8 O -0.976 6.976 9 C -0.661 4.661 10 C 0.526 3.474 11 O -0.592 6.592 12 N -0.574 5.574 13 C 0.067 3.933 14 C 0.116 3.884 15 C 0.118 3.882 16 H 0.040 0.960 17 C -0.128 4.128 18 C 0.086 3.914 19 N -0.636 5.636 20 C -0.207 4.207 21 H 0.056 0.944 22 C -0.006 4.006 23 N -0.945 5.945 24 Si 0.942 3.058 25 H -0.294 1.294 26 H -0.308 1.308 27 H -0.247 1.247 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.192 0.808 39 H 0.174 0.826 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.045 0.955 48 H 0.033 0.967 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 7.254 -12.301 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.831 5.831 4 C -0.024 4.024 5 C -0.239 4.239 6 S 2.736 3.264 7 O -0.971 6.971 8 O -0.966 6.966 9 C -0.789 4.789 10 C 0.313 3.687 11 O -0.476 6.476 12 N -0.302 5.302 13 C -0.075 4.075 14 C -0.007 4.007 15 C 0.012 3.988 16 H 0.058 0.942 17 C -0.167 4.167 18 C -0.038 4.038 19 N -0.365 5.365 20 C -0.335 4.335 21 H 0.074 0.926 22 C -0.203 4.203 23 N -0.589 5.589 24 Si 0.772 3.228 25 H -0.222 1.222 26 H -0.237 1.237 27 H -0.170 1.170 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.210 0.790 39 H 0.192 0.808 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.369 7.784 -11.666 15.842 hybrid contribution 1.291 -0.888 0.678 1.708 sum -6.078 6.895 -10.988 14.325 Atomic orbital electron populations 1.22226 0.95736 1.03347 1.02008 1.21523 0.95082 0.80292 1.04583 1.57560 1.79001 1.24768 1.21808 1.21657 0.99994 0.96721 0.84056 1.22347 0.95940 1.03668 1.01917 1.03871 0.76218 0.73352 0.72986 1.93523 1.65946 1.76249 1.61426 1.93491 1.85185 1.33315 1.84564 1.31129 1.28994 1.13900 1.04884 1.19632 0.82933 0.80125 0.86009 1.90762 1.54841 1.44598 1.57351 1.47561 1.09177 1.50516 1.22939 1.22425 0.92640 0.98643 0.93790 1.21928 1.00263 0.95947 0.82565 1.22739 0.96063 0.85675 0.94334 0.94216 1.23457 1.00692 0.95336 0.97184 1.22905 0.98159 0.95630 0.87085 1.45987 1.72692 1.15835 1.01981 1.18167 0.98158 1.14411 1.02728 0.92644 1.25865 0.98641 0.97437 0.98371 1.69831 1.26389 1.23282 1.39435 0.85814 0.78403 0.80057 0.78530 1.22180 1.23671 1.17044 0.89775 0.94557 0.90934 0.86689 0.90850 0.87421 0.89904 0.92963 0.90786 0.89466 0.79029 0.80810 0.90051 0.89638 0.90954 0.89791 0.88823 0.88902 0.88384 0.93720 0.94853 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.24 71.98 0.74 -2.30 16 2 C 0.11 1.89 5.98 86.38 0.52 2.40 16 3 N -0.99 -19.99 2.71 -515.79 -1.40 -21.39 16 4 C 0.10 1.45 6.38 86.38 0.55 2.00 16 5 C -0.18 -1.94 10.24 71.98 0.74 -1.20 16 6 S 2.64 80.51 4.51 -56.49 -0.25 80.25 16 7 O -0.98 -37.93 16.75 -127.64 -2.14 -40.07 16 8 O -0.98 -34.54 16.53 -127.64 -2.11 -36.65 16 9 C -0.66 -17.89 5.28 71.24 0.38 -17.52 16 10 C 0.53 19.39 7.62 87.66 0.67 20.06 16 11 O -0.59 -25.88 15.58 -3.04 -0.05 -25.93 16 12 N -0.57 -20.39 2.57 -846.76 -2.18 -22.57 16 13 C 0.07 2.18 8.92 127.77 1.14 3.32 16 14 C 0.12 4.04 5.39 86.38 0.47 4.51 16 15 C 0.12 4.58 4.27 41.79 0.18 4.76 16 16 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 17 C -0.13 -4.12 8.03 31.02 0.25 -3.87 16 18 C 0.09 3.44 7.52 83.27 0.63 4.06 16 19 N -0.64 -28.81 3.00 -713.35 -2.14 -30.95 16 20 C -0.21 -10.57 7.83 84.03 0.66 -9.91 16 21 H 0.06 3.10 6.32 -2.91 -0.02 3.08 16 22 C -0.01 -0.32 5.50 84.86 0.47 0.15 16 23 N -0.95 -53.18 13.97 21.65 0.30 -52.88 16 24 Si 0.94 43.31 25.14 68.60 1.72 45.03 16 25 H -0.29 -13.77 7.02 99.48 0.70 -13.07 16 26 H -0.31 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.25 -10.42 6.86 99.48 0.68 -9.74 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.85 7.90 -2.39 -0.02 0.83 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.12 1.19 8.11 -2.39 -0.02 1.17 16 32 H 0.07 1.43 7.61 -2.39 -0.02 1.41 16 33 H 0.11 1.06 8.11 -2.39 -0.02 1.05 16 34 H 0.08 1.43 6.82 -2.39 -0.02 1.41 16 35 H 0.05 0.59 6.96 -2.38 -0.02 0.58 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.19 3.51 6.23 -2.39 -0.01 3.50 16 39 H 0.17 4.23 8.11 -2.39 -0.02 4.21 16 40 H 0.08 3.33 4.39 -2.38 -0.01 3.32 16 41 H 0.09 2.07 6.67 -2.39 -0.02 2.05 16 42 H 0.07 2.32 7.77 -2.38 -0.02 2.30 16 43 H 0.08 2.74 7.68 -2.39 -0.02 2.72 16 44 H 0.09 2.99 7.62 -2.39 -0.02 2.98 16 45 H 0.09 2.82 7.87 -2.39 -0.02 2.80 16 46 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.03 1.37 4.72 -2.39 -0.01 1.36 16 49 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -77.52 393.12 0.03 -77.49 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.91 Total: 21.18 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 7.37 Total: 6.47 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.42 Total: -127.78 kcal Atomic # 8 Polarization: -98.36 SS G_CDS: -4.30 Total: -102.65 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.72 Total: 45.03 kcal Atomic # 16 Polarization: 80.51 SS G_CDS: -0.25 Total: 80.25 kcal Total: -77.52 0.03 -77.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691402713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.426 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds