Wall clock time and date at job start Wed Apr 1 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81395 * 109.47105 * 2 1 4 4 O 1.42097 * 110.54241 * 68.38012 * 3 2 1 5 5 O 1.42097 * 110.54536 * 291.62742 * 3 2 1 6 6 N 1.65605 * 104.45115 * 180.02562 * 3 2 1 7 7 C 1.46496 * 119.99831 * 270.00711 * 6 3 2 8 8 C 1.46496 * 119.99713 * 89.99667 * 6 3 2 9 9 C 1.50706 * 109.47013 * 95.00659 * 8 6 3 10 10 O 1.21277 * 119.99659 * 359.97438 * 9 8 6 11 11 N 1.34768 * 120.00205 * 179.97438 * 9 8 6 12 12 C 1.48149 * 127.83973 * 359.97265 * 11 9 8 13 13 C 1.54393 * 104.61751 * 140.41447 * 12 11 9 14 14 H 1.08997 * 110.42690 * 264.95396 * 13 12 11 15 15 C 1.53000 * 110.34131 * 142.74091 * 13 12 11 16 16 C 1.54283 * 104.95913 * 23.86667 * 13 12 11 17 17 H 1.09006 * 110.34073 * 118.97441 * 16 13 12 18 18 C 1.52997 * 110.34549 * 241.12858 * 16 13 12 19 19 N 1.46505 * 109.47212 * 185.00108 * 18 16 13 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46725 * 59.99976 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46920 * 300.00189 * 24 22 20 28 28 C 1.48147 * 127.83848 * 179.97438 * 11 9 8 29 29 H 1.08992 * 109.47119 * 59.99721 * 1 2 3 30 30 H 1.08995 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46642 * 299.99847 * 1 2 3 32 32 H 1.09004 * 109.46942 * 240.00480 * 2 1 3 33 33 H 1.08999 * 109.47260 * 120.00685 * 2 1 3 34 34 H 1.09001 * 109.46870 * 269.99364 * 7 6 3 35 35 H 1.09000 * 109.47393 * 29.99328 * 7 6 3 36 36 H 1.09008 * 109.47267 * 149.99891 * 7 6 3 37 37 H 1.08998 * 109.47391 * 335.00704 * 8 6 3 38 38 H 1.09005 * 109.47159 * 214.99802 * 8 6 3 39 39 H 1.09000 * 110.40472 * 21.62932 * 12 11 9 40 40 H 1.08994 * 110.50897 * 259.25068 * 12 11 9 41 41 H 1.08998 * 109.46644 * 304.46063 * 15 13 12 42 42 H 1.08998 * 109.47380 * 64.46179 * 15 13 12 43 43 H 1.09000 * 109.46707 * 184.46357 * 15 13 12 44 44 H 1.09002 * 109.47153 * 65.00100 * 18 16 13 45 45 H 1.09001 * 109.46832 * 305.00291 * 18 16 13 46 46 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 47 47 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.41275 * 100.79899 * 28 11 9 49 49 H 1.09006 * 110.40750 * 338.36450 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3437 1.2370 5 8 1.8386 2.3439 -1.2369 6 7 3.7844 1.5653 -0.0007 7 6 4.5146 1.5009 1.2677 8 6 4.5135 1.5013 -1.2698 9 6 4.9943 2.8800 -1.6429 10 8 4.7514 3.8231 -0.9201 11 7 5.6942 3.0649 -2.7797 12 6 6.0864 2.0462 -3.7813 13 6 5.8989 2.7474 -5.1440 14 1 4.9191 2.5136 -5.5605 15 6 7.0032 2.3257 -6.1155 16 6 6.0041 4.2550 -4.8340 17 1 6.8414 4.6957 -5.3752 18 6 4.7005 4.9661 -5.2026 19 7 4.8614 6.4099 -5.0134 20 6 3.8189 7.2561 -5.2826 21 1 2.8780 6.8590 -5.6340 22 6 3.9715 8.6241 -5.1039 23 7 5.1183 9.1081 -4.6761 24 14 2.5493 9.7784 -5.4705 25 1 1.3937 9.4302 -4.6053 26 1 2.9654 11.1780 -5.2002 27 1 2.1580 9.6443 -6.8967 28 6 6.2459 4.3329 -3.3111 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.7856 2.5086 1.5824 35 1 3.8831 1.0405 2.0275 36 1 5.4184 0.9057 1.1369 37 1 3.8526 1.1236 -2.0499 38 1 5.3692 0.8345 -1.1640 39 1 5.4370 1.1737 -3.7103 40 1 7.1279 1.7561 -3.6433 41 1 7.9767 2.5299 -5.6696 42 1 6.9157 1.2595 -6.3244 43 1 6.9039 2.8874 -7.0443 44 1 3.8955 4.6034 -4.5634 45 1 4.4570 4.7611 -6.2451 46 1 5.7065 6.7665 -4.6981 47 1 5.2252 10.0641 -4.5516 48 1 7.3128 4.4019 -3.0988 49 1 5.7169 5.1856 -2.8855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699974295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:54 Heat of formation + Delta-G solvation = -81.653594 kcal Electronic energy + Delta-G solvation = -30052.945708 eV Core-core repulsion = 25950.169019 eV Total energy + Delta-G solvation = -4102.776689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.03811 -38.09304 -37.25829 -36.08095 -35.79414 -34.48717 -33.52205 -32.75828 -31.34078 -29.68181 -28.40551 -26.34530 -25.97203 -24.89233 -24.12014 -23.17494 -21.14605 -19.92268 -19.38543 -18.85073 -17.95557 -17.44459 -16.91598 -16.61453 -16.38854 -15.80387 -15.55319 -14.99969 -14.70393 -14.36741 -14.29556 -14.04972 -13.83914 -13.48797 -13.30776 -13.26857 -13.06115 -12.87240 -12.80829 -12.66474 -12.62162 -12.33067 -12.17014 -11.96357 -11.88658 -11.79920 -11.74148 -11.54909 -11.41500 -11.00482 -10.87790 -10.76854 -10.55514 -10.45636 -10.24246 -10.14748 -9.90422 -9.54634 -9.09730 -8.76112 -8.50708 -6.80431 -5.64919 -2.92970 -0.03802 2.33827 2.76960 3.09065 3.53737 3.57806 3.59591 3.71916 3.84272 4.14316 4.34289 4.40447 4.48116 4.58852 4.71166 4.77116 4.84008 4.90609 4.98103 5.01476 5.16177 5.23055 5.26219 5.33632 5.40485 5.47565 5.50670 5.54144 5.58629 5.69255 5.72984 5.74162 5.80434 6.01475 6.09817 6.12953 6.22165 6.26527 6.30993 6.54513 6.57181 6.82630 7.00816 7.73520 7.81577 8.34693 8.54037 9.65132 10.22250 10.56960 11.58137 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003350 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.465294 B = 8357.169029 C = 9989.079481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.635 4.635 3 S 2.604 3.396 4 O -0.945 6.945 5 O -0.936 6.936 6 N -0.987 5.987 7 C 0.095 3.905 8 C 0.112 3.888 9 C 0.514 3.486 10 O -0.518 6.518 11 N -0.621 5.621 12 C 0.103 3.897 13 C -0.103 4.103 14 H 0.084 0.916 15 C -0.140 4.140 16 C -0.104 4.104 17 H 0.088 0.912 18 C 0.161 3.839 19 N -0.731 5.731 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.110 3.890 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.065 0.935 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -28.541 7.521 29.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.764 4.764 3 S 2.695 3.305 4 O -0.935 6.935 5 O -0.926 6.926 6 N -0.823 5.823 7 C -0.050 4.050 8 C -0.018 4.018 9 C 0.300 3.700 10 O -0.393 6.393 11 N -0.357 5.357 12 C -0.020 4.020 13 C -0.122 4.122 14 H 0.102 0.898 15 C -0.198 4.198 16 C -0.124 4.124 17 H 0.106 0.894 18 C 0.034 3.966 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.012 4.012 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.037 0.963 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.731 -27.181 8.029 28.352 hybrid contribution -0.241 0.049 -0.199 0.317 sum 0.490 -27.132 7.830 28.243 Atomic orbital electron populations 1.21512 0.90388 1.04998 1.03791 1.30605 1.07392 1.27045 1.11361 1.05529 0.72847 0.77242 0.74853 1.93600 1.82808 1.71775 1.45315 1.93665 1.82604 1.71500 1.44869 1.57192 1.24695 1.89569 1.10848 1.21505 0.97070 1.03254 0.83135 1.21090 0.99089 0.95492 0.86079 1.20614 0.77799 0.91520 0.80067 1.90761 1.55441 1.42812 1.50267 1.48981 1.54414 1.10869 1.21391 1.22520 1.00073 0.91529 0.87889 1.22132 1.00409 0.95259 0.94445 0.89758 1.21808 0.97854 1.00802 0.99291 1.22408 1.00717 0.94169 0.95061 0.89399 1.20698 0.93129 0.85645 0.97142 1.42334 1.14811 0.99815 1.80569 1.19174 0.92786 0.88034 1.36770 0.91336 1.24710 0.97128 0.96812 1.02308 1.69643 1.23631 1.12335 1.52765 0.86269 0.81888 0.80180 0.77903 1.21243 1.21717 1.21346 1.22466 0.97982 0.87577 0.93214 0.90713 0.89999 0.90889 0.85116 0.85181 0.91461 0.91006 0.91067 0.87352 0.87394 0.90791 0.90909 0.92488 0.92768 0.91925 0.96103 0.96294 0.78333 0.93561 0.91707 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.64 -4.01 6.90 37.16 0.26 -3.76 16 3 S 2.60 31.45 5.32 -107.50 -0.57 30.88 16 4 O -0.94 -14.53 17.09 -57.54 -0.98 -15.51 16 5 O -0.94 -15.48 16.98 -57.54 -0.98 -16.46 16 6 N -0.99 -10.52 2.61 -123.05 -0.32 -10.84 16 7 C 0.10 0.83 10.23 59.84 0.61 1.44 16 8 C 0.11 1.12 4.74 -5.19 -0.02 1.10 16 9 C 0.51 8.18 7.98 -10.99 -0.09 8.10 16 10 O -0.52 -11.03 16.69 5.56 0.09 -10.94 16 11 N -0.62 -9.02 3.32 -169.30 -0.56 -9.58 16 12 C 0.10 1.01 6.46 -2.40 -0.02 1.00 16 13 C -0.10 -1.18 3.31 -89.22 -0.30 -1.48 16 14 H 0.08 1.00 7.71 -51.93 -0.40 0.60 16 15 C -0.14 -1.26 8.92 37.16 0.33 -0.93 16 16 C -0.10 -1.66 2.75 -89.22 -0.24 -1.91 16 17 H 0.09 1.39 7.71 -51.93 -0.40 0.99 16 18 C 0.16 3.43 5.37 -4.04 -0.02 3.41 16 19 N -0.73 -19.53 5.21 -59.91 -0.31 -19.84 16 20 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 21 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -29.57 13.06 55.49 0.72 -28.84 16 24 Si 0.91 23.78 29.55 -169.99 -5.02 18.75 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 C 0.11 1.86 6.47 -2.41 -0.02 1.84 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.13 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 36 H 0.07 0.40 7.94 -51.92 -0.41 -0.02 16 37 H 0.11 0.87 7.42 -51.93 -0.39 0.48 16 38 H 0.11 0.61 7.96 -51.93 -0.41 0.20 16 39 H 0.07 0.52 7.30 -51.93 -0.38 0.14 16 40 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 41 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.38 10.59 7.61 -40.82 -0.31 10.28 16 47 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.10 2.15 7.31 -51.93 -0.38 1.77 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -42.11 410.05 -9.65 -51.76 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.51 Total: 3.97 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 0.62 Total: 0.48 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -0.47 Total: -69.11 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.87 Total: -42.91 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.75 kcal Atomic # 16 Polarization: 31.45 SS G_CDS: -0.57 Total: 30.88 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -42.11 -9.65 -51.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699974295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.897 kcal (2) G-P(sol) polarization free energy of solvation -42.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds