Wall clock time and date at job start Wed Apr 1 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81395 * 109.47105 * 2 1 4 4 O 1.42097 * 110.54241 * 68.38012 * 3 2 1 5 5 O 1.42097 * 110.54536 * 291.62742 * 3 2 1 6 6 N 1.65605 * 104.45115 * 180.02562 * 3 2 1 7 7 C 1.46496 * 119.99831 * 270.00711 * 6 3 2 8 8 C 1.46496 * 119.99713 * 89.99667 * 6 3 2 9 9 C 1.50706 * 109.47013 * 95.00659 * 8 6 3 10 10 O 1.21277 * 119.99659 * 359.97438 * 9 8 6 11 11 N 1.34768 * 120.00205 * 179.97438 * 9 8 6 12 12 C 1.48149 * 127.83973 * 359.97265 * 11 9 8 13 13 C 1.54393 * 104.61751 * 140.41447 * 12 11 9 14 14 H 1.08997 * 110.42690 * 264.95396 * 13 12 11 15 15 C 1.53000 * 110.34131 * 142.74091 * 13 12 11 16 16 C 1.54283 * 104.95913 * 23.86667 * 13 12 11 17 17 H 1.09006 * 110.34073 * 118.97441 * 16 13 12 18 18 C 1.52997 * 110.34549 * 241.12858 * 16 13 12 19 19 N 1.46505 * 109.47212 * 185.00108 * 18 16 13 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46725 * 59.99976 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46920 * 300.00189 * 24 22 20 28 28 C 1.48147 * 127.83848 * 179.97438 * 11 9 8 29 29 H 1.08992 * 109.47119 * 59.99721 * 1 2 3 30 30 H 1.08995 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46642 * 299.99847 * 1 2 3 32 32 H 1.09004 * 109.46942 * 240.00480 * 2 1 3 33 33 H 1.08999 * 109.47260 * 120.00685 * 2 1 3 34 34 H 1.09001 * 109.46870 * 269.99364 * 7 6 3 35 35 H 1.09000 * 109.47393 * 29.99328 * 7 6 3 36 36 H 1.09008 * 109.47267 * 149.99891 * 7 6 3 37 37 H 1.08998 * 109.47391 * 335.00704 * 8 6 3 38 38 H 1.09005 * 109.47159 * 214.99802 * 8 6 3 39 39 H 1.09000 * 110.40472 * 21.62932 * 12 11 9 40 40 H 1.08994 * 110.50897 * 259.25068 * 12 11 9 41 41 H 1.08998 * 109.46644 * 304.46063 * 15 13 12 42 42 H 1.08998 * 109.47380 * 64.46179 * 15 13 12 43 43 H 1.09000 * 109.46707 * 184.46357 * 15 13 12 44 44 H 1.09002 * 109.47153 * 65.00100 * 18 16 13 45 45 H 1.09001 * 109.46832 * 305.00291 * 18 16 13 46 46 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 47 47 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.41275 * 100.79899 * 28 11 9 49 49 H 1.09006 * 110.40750 * 338.36450 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3437 1.2370 5 8 1.8386 2.3439 -1.2369 6 7 3.7844 1.5653 -0.0007 7 6 4.5146 1.5009 1.2677 8 6 4.5135 1.5013 -1.2698 9 6 4.9943 2.8800 -1.6429 10 8 4.7514 3.8231 -0.9201 11 7 5.6942 3.0649 -2.7797 12 6 6.0864 2.0462 -3.7813 13 6 5.8989 2.7474 -5.1440 14 1 4.9191 2.5136 -5.5605 15 6 7.0032 2.3257 -6.1155 16 6 6.0041 4.2550 -4.8340 17 1 6.8414 4.6957 -5.3752 18 6 4.7005 4.9661 -5.2026 19 7 4.8614 6.4099 -5.0134 20 6 3.8189 7.2561 -5.2826 21 1 2.8780 6.8590 -5.6340 22 6 3.9715 8.6241 -5.1039 23 7 5.1183 9.1081 -4.6761 24 14 2.5493 9.7784 -5.4705 25 1 1.3937 9.4302 -4.6053 26 1 2.9654 11.1780 -5.2002 27 1 2.1580 9.6443 -6.8967 28 6 6.2459 4.3329 -3.3111 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.7856 2.5086 1.5824 35 1 3.8831 1.0405 2.0275 36 1 5.4184 0.9057 1.1369 37 1 3.8526 1.1236 -2.0499 38 1 5.3692 0.8345 -1.1640 39 1 5.4370 1.1737 -3.7103 40 1 7.1279 1.7561 -3.6433 41 1 7.9767 2.5299 -5.6696 42 1 6.9157 1.2595 -6.3244 43 1 6.9039 2.8874 -7.0443 44 1 3.8955 4.6034 -4.5634 45 1 4.4570 4.7611 -6.2451 46 1 5.7065 6.7665 -4.6981 47 1 5.2252 10.0641 -4.5516 48 1 7.3128 4.4019 -3.0988 49 1 5.7169 5.1856 -2.8855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699974295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:53 Heat of formation + Delta-G solvation = -116.779208 kcal Electronic energy + Delta-G solvation = -30054.468869 eV Core-core repulsion = 25950.169019 eV Total energy + Delta-G solvation = -4104.299850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19237 -39.27779 -38.28288 -37.08895 -36.71136 -36.43448 -34.11528 -34.05320 -33.09355 -30.99531 -29.60445 -27.30442 -27.16489 -26.04674 -25.10014 -24.64117 -22.59641 -20.98826 -20.60233 -19.78078 -19.23865 -18.80223 -18.29198 -17.49568 -17.33868 -16.99482 -16.69029 -16.51374 -15.78700 -15.72347 -15.32015 -15.24755 -15.05724 -14.97186 -14.51814 -14.21661 -14.00689 -13.90871 -13.87033 -13.60023 -13.44336 -13.34121 -13.24192 -13.21831 -12.96056 -12.86952 -12.75328 -12.67240 -12.59282 -12.49726 -12.41949 -12.22842 -11.98744 -11.78660 -11.59397 -11.46212 -11.33957 -11.22732 -10.99197 -10.01450 -9.69228 -9.05546 -8.00724 -5.29605 -0.85540 1.39191 1.44968 1.50356 1.52825 1.63561 2.04222 2.50919 2.94409 3.05978 3.31823 3.44317 3.55003 3.61444 3.75181 3.81057 3.88555 3.91022 4.17829 4.22267 4.29396 4.36941 4.39416 4.45556 4.58456 4.61814 4.62223 4.68767 4.70969 4.79583 4.80902 4.86153 4.91631 4.98484 5.02879 5.09059 5.09470 5.11110 5.27726 5.32577 5.38576 5.41325 5.44986 5.63087 6.21940 6.64576 7.19983 7.27539 8.03419 8.27026 9.22722 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003350 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.465294 B = 8357.169029 C = 9989.079481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.585 4.585 3 S 2.578 3.422 4 O -1.000 7.000 5 O -1.000 7.000 6 N -0.988 5.988 7 C 0.090 3.910 8 C 0.115 3.885 9 C 0.495 3.505 10 O -0.594 6.594 11 N -0.622 5.622 12 C 0.102 3.898 13 C -0.096 4.096 14 H 0.080 0.920 15 C -0.133 4.133 16 C -0.096 4.096 17 H 0.090 0.910 18 C 0.163 3.837 19 N -0.743 5.743 20 C -0.252 4.252 21 H 0.068 0.932 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.974 3.026 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.269 1.269 28 C 0.109 3.891 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.049 0.951 44 H -0.007 1.007 45 H 0.027 0.973 46 H 0.374 0.626 47 H 0.253 0.747 48 H 0.084 0.916 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -33.918 6.618 34.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.720 4.720 3 S 2.677 3.323 4 O -0.991 6.991 5 O -0.991 6.991 6 N -0.825 5.825 7 C -0.055 4.055 8 C -0.014 4.014 9 C 0.283 3.717 10 O -0.474 6.474 11 N -0.357 5.357 12 C -0.018 4.018 13 C -0.116 4.116 14 H 0.099 0.901 15 C -0.190 4.190 16 C -0.115 4.115 17 H 0.109 0.891 18 C 0.037 3.963 19 N -0.386 5.386 20 C -0.384 4.384 21 H 0.086 0.914 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.803 3.197 25 H -0.213 1.213 26 H -0.214 1.214 27 H -0.195 1.195 28 C -0.014 4.014 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.185 0.815 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.011 0.989 45 H 0.044 0.956 46 H 0.206 0.794 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.273 -32.568 7.079 33.353 hybrid contribution -0.446 1.642 0.092 1.704 sum 0.827 -30.926 7.171 31.757 Atomic orbital electron populations 1.21746 0.90512 1.06891 1.03304 1.30217 1.06853 1.19744 1.15198 1.05960 0.73432 0.80145 0.72774 1.93520 1.83636 1.75271 1.46630 1.93581 1.83597 1.75232 1.46658 1.57036 1.24189 1.89535 1.11691 1.21680 0.99113 1.01643 0.83054 1.21472 1.01485 0.92026 0.86411 1.22048 0.76708 0.93463 0.79445 1.90728 1.58202 1.45712 1.52779 1.49177 1.53637 1.10949 1.21897 1.22918 1.03120 0.91080 0.84726 1.22150 1.01588 0.91305 0.96548 0.90115 1.21769 0.96948 1.02534 0.97785 1.22317 0.97474 0.97414 0.94334 0.89134 1.20815 0.95537 0.83279 0.96672 1.42545 1.13773 1.01919 1.80362 1.19575 0.93543 0.89029 1.36280 0.91359 1.25595 0.99927 0.98448 1.02731 1.69804 1.25608 1.12380 1.54043 0.85206 0.78421 0.77750 0.78374 1.21294 1.21436 1.19494 1.22256 0.98262 0.87262 0.93663 0.91604 0.86583 0.91485 0.81266 0.81422 0.95881 0.88882 0.86960 0.84817 0.81500 0.86556 0.87446 0.91577 0.89567 0.93184 0.98876 0.95562 0.79399 0.93867 0.89744 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.92 71.98 0.71 -0.97 16 2 C -0.59 -4.89 6.90 71.98 0.50 -4.39 16 3 S 2.58 62.33 5.32 -56.49 -0.30 62.03 16 4 O -1.00 -32.80 17.09 -127.65 -2.18 -34.98 16 5 O -1.00 -34.87 16.98 -127.65 -2.17 -37.04 16 6 N -0.99 -19.79 2.61 -543.22 -1.42 -21.20 16 7 C 0.09 1.45 10.23 127.77 1.31 2.76 16 8 C 0.11 1.97 4.74 85.64 0.41 2.38 16 9 C 0.49 15.96 7.98 87.66 0.70 16.66 16 10 O -0.59 -27.57 16.69 -3.02 -0.05 -27.62 16 11 N -0.62 -17.75 3.32 -807.94 -2.68 -20.43 16 12 C 0.10 1.58 6.46 86.54 0.56 2.14 16 13 C -0.10 -1.97 3.31 -9.89 -0.03 -2.00 16 14 H 0.08 1.73 7.71 -2.39 -0.02 1.72 16 15 C -0.13 -1.88 8.92 71.98 0.64 -1.24 16 16 C -0.10 -3.11 2.75 -9.89 -0.03 -3.14 16 17 H 0.09 2.89 7.71 -2.38 -0.02 2.87 16 18 C 0.16 7.31 5.37 86.38 0.46 7.78 16 19 N -0.74 -42.11 5.21 -343.45 -1.79 -43.90 16 20 C -0.25 -15.74 9.99 84.03 0.84 -14.90 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.07 -4.69 5.50 84.86 0.47 -4.22 16 23 N -0.97 -63.71 13.06 21.65 0.28 -63.43 16 24 Si 0.97 50.35 29.55 68.60 2.03 52.38 16 25 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 26 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 28 C 0.11 3.88 6.47 86.53 0.56 4.44 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.17 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 1.05 7.79 -2.39 -0.02 1.03 16 36 H 0.11 0.85 7.94 -2.38 -0.02 0.83 16 37 H 0.13 1.61 7.42 -2.39 -0.02 1.59 16 38 H 0.17 0.87 7.96 -2.38 -0.02 0.85 16 39 H 0.12 0.89 7.30 -2.39 -0.02 0.88 16 40 H 0.11 1.03 7.83 -2.39 -0.02 1.01 16 41 H 0.07 0.84 8.10 -2.39 -0.02 0.83 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H -0.01 -0.34 8.13 -2.39 -0.02 -0.36 16 45 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.37 22.13 7.61 -92.71 -0.71 21.42 16 47 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 48 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.03 1.57 7.31 -2.38 -0.02 1.55 16 Total: -1.00 -106.30 410.05 -0.96 -107.26 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.22 Total: 21.64 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 7.09 Total: 5.29 kcal Atomic # 7 Polarization: -143.36 SS G_CDS: -5.60 Total: -148.96 kcal Atomic # 8 Polarization: -95.24 SS G_CDS: -4.40 Total: -99.64 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.03 Total: 52.38 kcal Atomic # 16 Polarization: 62.33 SS G_CDS: -0.30 Total: 62.03 kcal Total: -106.30 -0.96 -107.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699974295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.524 kcal (2) G-P(sol) polarization free energy of solvation -106.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds