Wall clock time and date at job start Wed Apr 1 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47053 * 2 1 4 4 C 1.46492 * 119.99971 * 274.99761 * 3 2 1 5 5 C 1.52999 * 109.47371 * 275.00110 * 4 3 2 6 6 S 1.65597 * 120.00052 * 94.99678 * 3 2 1 7 7 O 1.42104 * 104.27972 * 333.92943 * 6 3 2 8 8 O 1.42097 * 104.28082 * 206.06902 * 6 3 2 9 9 C 1.81403 * 104.44843 * 90.00124 * 6 3 2 10 10 C 1.50705 * 109.47072 * 179.97438 * 9 6 3 11 11 O 1.21279 * 119.99886 * 0.02562 * 10 9 6 12 12 N 1.34774 * 120.00004 * 179.97438 * 10 9 6 13 13 C 1.47427 * 125.64777 * 180.02562 * 12 10 9 14 14 C 1.54914 * 104.83130 * 204.09341 * 13 12 10 15 15 H 1.09002 * 111.00226 * 81.06117 * 14 13 12 16 16 C 1.53003 * 111.00334 * 204.91561 * 14 13 12 17 17 C 1.55160 * 101.58066 * 322.98828 * 14 13 12 18 18 H 1.08998 * 110.87113 * 153.93635 * 17 14 13 19 19 N 1.46499 * 110.71936 * 277.14098 * 17 14 13 20 20 C 1.36939 * 119.99547 * 199.97726 * 19 17 14 21 21 H 1.07993 * 120.00716 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99459 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99635 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99668 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99848 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99841 * 24 22 20 28 28 C 1.47020 * 125.65009 * 359.97438 * 12 10 9 29 29 H 1.08998 * 109.47393 * 300.00277 * 1 2 3 30 30 H 1.08997 * 109.47220 * 60.00669 * 1 2 3 31 31 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47393 * 239.99723 * 2 1 3 33 33 H 1.09007 * 109.47181 * 119.99497 * 2 1 3 34 34 H 1.09005 * 109.47234 * 34.99648 * 4 3 2 35 35 H 1.09002 * 109.47607 * 155.00330 * 4 3 2 36 36 H 1.09005 * 109.47090 * 299.99966 * 5 4 3 37 37 H 1.09001 * 109.47303 * 59.99439 * 5 4 3 38 38 H 1.08997 * 109.47861 * 180.02562 * 5 4 3 39 39 H 1.08994 * 109.47208 * 59.99985 * 9 6 3 40 40 H 1.09002 * 109.46908 * 299.99661 * 9 6 3 41 41 H 1.08997 * 110.36797 * 322.92699 * 13 12 10 42 42 H 1.09000 * 110.36756 * 85.14387 * 13 12 10 43 43 H 1.09000 * 109.46867 * 172.19753 * 16 14 13 44 44 H 1.08993 * 109.46888 * 292.19368 * 16 14 13 45 45 H 1.08998 * 109.47251 * 52.19412 * 16 14 13 46 46 H 0.96998 * 120.00185 * 19.97110 * 19 17 14 47 47 H 0.96993 * 120.00007 * 0.02562 * 23 22 20 48 48 H 1.08999 * 109.88442 * 59.55284 * 28 12 10 49 49 H 1.09008 * 110.00893 * 298.46473 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2638 5 6 3.5151 1.7839 -1.8917 6 16 2.4120 2.1202 1.4287 7 8 1.6207 1.4497 2.3999 8 8 2.2333 3.5056 1.1676 9 6 4.1696 1.7390 1.6661 10 6 4.6506 2.3657 2.9495 11 8 3.8833 3.0060 3.6365 12 7 5.9333 2.2136 3.3343 13 6 6.5342 2.7696 4.5604 14 6 8.0488 2.8676 4.2505 15 1 8.2719 3.7636 3.6713 16 6 8.8755 2.8289 5.5374 17 6 8.2771 1.5873 3.4042 18 1 9.1286 1.7108 2.7351 19 7 8.4654 0.4205 4.2699 20 6 9.0740 -0.7042 3.7801 21 1 9.4147 -0.7314 2.7557 22 6 9.2529 -1.8096 4.6005 23 7 8.8382 -1.7764 5.8492 24 14 10.0824 -3.3441 3.9323 25 1 9.0567 -4.2497 3.3548 26 1 10.7946 -4.0412 5.0332 27 1 11.0552 -2.9616 2.8775 28 6 6.9648 1.4651 2.6013 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.3618 1.8096 -1.9453 35 1 2.0922 3.1803 -1.0756 36 1 4.3117 2.0829 -1.2103 37 1 3.5813 0.7123 -2.0799 38 1 3.6195 2.3254 -2.8318 39 1 4.7440 2.1375 0.8300 40 1 4.3033 0.6584 1.7166 41 1 6.1250 3.7580 4.7689 42 1 6.3603 2.1020 5.4044 43 1 9.9341 2.7596 5.2872 44 1 8.6967 3.7380 6.1114 45 1 8.5846 1.9617 6.1302 46 1 8.1592 0.4447 5.1899 47 1 8.4072 -0.9798 6.1961 48 1 7.0971 1.8925 1.6074 49 1 6.6770 0.4170 2.5186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700270400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:49 Heat of formation + Delta-G solvation = -88.245432 kcal Electronic energy + Delta-G solvation = -30196.589190 eV Core-core repulsion = 26093.526658 eV Total energy + Delta-G solvation = -4103.062532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.11907 -37.99933 -37.48531 -37.26670 -35.95659 -34.39131 -32.82124 -32.27633 -30.71687 -30.28449 -29.11061 -27.71322 -26.06447 -24.04585 -23.78694 -22.62281 -22.32015 -19.64020 -19.58830 -18.78652 -18.14211 -17.73502 -16.92735 -16.85617 -16.45517 -16.09415 -15.35023 -15.14633 -14.98238 -14.52226 -14.36652 -14.15054 -13.77527 -13.72454 -13.48398 -13.35313 -13.18424 -13.07023 -12.58840 -12.43374 -12.40892 -12.17033 -12.14382 -12.12169 -12.05827 -11.96450 -11.78739 -11.39928 -11.30751 -11.23829 -11.01594 -10.92842 -10.76687 -10.41319 -10.28217 -10.23176 -10.09542 -9.44118 -9.32600 -9.12773 -8.56859 -7.24668 -6.25231 -3.28192 -0.00527 2.41672 2.45162 2.94130 3.42139 3.46019 3.60467 3.72658 3.97149 4.11177 4.39209 4.52629 4.60470 4.74739 4.78511 4.80556 4.94773 4.97490 5.02282 5.03908 5.11932 5.13016 5.23557 5.29522 5.40611 5.51877 5.54915 5.55717 5.60030 5.70354 5.74546 5.80601 5.88866 5.93580 6.01577 6.02974 6.11769 6.14161 6.27422 6.28984 6.33521 6.53060 6.67668 7.49445 7.64640 7.92873 8.59780 9.03566 9.90187 10.03932 11.22115 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003172 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.769320 B = 8825.845672 C =10020.899454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 N -1.002 6.002 4 C 0.107 3.893 5 C -0.179 4.179 6 S 2.642 3.358 7 O -0.935 6.935 8 O -0.941 6.941 9 C -0.669 4.669 10 C 0.554 3.446 11 O -0.551 6.551 12 N -0.593 5.593 13 C 0.111 3.889 14 C -0.116 4.116 15 H 0.083 0.917 16 C -0.130 4.130 17 C 0.178 3.822 18 H 0.074 0.926 19 N -0.723 5.723 20 C -0.342 4.342 21 H 0.067 0.933 22 C -0.038 4.038 23 N -0.937 5.937 24 Si 1.082 2.918 25 H -0.295 1.295 26 H -0.287 1.287 27 H -0.294 1.294 28 C 0.066 3.934 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.371 0.629 47 H 0.256 0.744 48 H 0.059 0.941 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 7.191 -15.683 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.840 5.840 4 C -0.019 4.019 5 C -0.238 4.238 6 S 2.730 3.270 7 O -0.925 6.925 8 O -0.931 6.931 9 C -0.796 4.796 10 C 0.340 3.660 11 O -0.431 6.431 12 N -0.324 5.324 13 C -0.011 4.011 14 C -0.136 4.136 15 H 0.101 0.899 16 C -0.188 4.188 17 C 0.066 3.934 18 H 0.092 0.908 19 N -0.366 5.366 20 C -0.472 4.472 21 H 0.085 0.915 22 C -0.237 4.237 23 N -0.581 5.581 24 Si 0.913 3.087 25 H -0.223 1.223 26 H -0.213 1.213 27 H -0.221 1.221 28 C -0.060 4.060 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.206 0.794 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.221 6.409 -14.630 18.963 hybrid contribution 0.165 0.976 -0.632 1.174 sum -10.056 7.385 -15.261 19.712 Atomic orbital electron populations 1.22197 0.95589 1.02536 1.02852 1.21275 0.95112 0.81029 1.03301 1.57846 1.79325 1.24247 1.22566 1.21409 0.98005 0.97531 0.84908 1.22317 0.97234 1.02764 1.01484 1.04354 0.75817 0.74123 0.72663 1.93587 1.64054 1.75743 1.59153 1.93552 1.84354 1.31253 1.83958 1.31192 1.30118 1.12960 1.05333 1.18698 0.81854 0.80451 0.84970 1.90820 1.53720 1.42776 1.55786 1.48282 1.08518 1.51384 1.24213 1.22395 0.92709 0.99096 0.86912 1.22660 0.93391 0.99044 0.98454 0.89882 1.21535 1.00042 1.01350 0.95863 1.21131 0.93193 0.87111 0.91987 0.90832 1.42478 1.71204 1.11838 1.11061 1.20040 1.35664 0.93464 0.98080 0.91504 1.25791 1.01311 1.01289 0.95304 1.70863 1.41819 1.30887 1.14576 0.83208 0.75756 0.75126 0.74649 1.22279 1.21300 1.22062 1.23402 0.90461 0.96585 0.95510 0.91522 0.92381 0.91366 0.90192 0.89917 0.89745 0.88665 0.92721 0.91763 0.90992 0.82688 0.82356 0.90549 0.90898 0.91859 0.93231 0.91738 0.79415 0.93266 0.92309 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.12 0.95 5.98 -4.04 -0.02 0.93 16 3 N -1.00 -9.49 2.71 -114.38 -0.31 -9.80 16 4 C 0.11 0.78 6.38 -4.05 -0.03 0.76 16 5 C -0.18 -1.07 10.24 37.16 0.38 -0.69 16 6 S 2.64 36.35 4.51 -107.50 -0.48 35.87 16 7 O -0.94 -15.91 16.75 -57.55 -0.96 -16.88 16 8 O -0.94 -15.32 16.53 -57.55 -0.95 -16.28 16 9 C -0.67 -8.33 5.85 36.01 0.21 -8.12 16 10 C 0.55 9.49 7.87 -10.98 -0.09 9.41 16 11 O -0.55 -11.21 16.12 5.56 0.09 -11.12 16 12 N -0.59 -9.85 3.33 -170.51 -0.57 -10.42 16 13 C 0.11 1.80 6.35 -2.52 -0.02 1.78 16 14 C -0.12 -1.72 3.51 -88.47 -0.31 -2.03 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -1.94 8.85 37.16 0.33 -1.61 16 17 C 0.18 3.12 3.37 -66.09 -0.22 2.90 16 18 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 19 N -0.72 -16.16 4.61 -51.65 -0.24 -16.40 16 20 C -0.34 -8.73 9.98 -15.06 -0.15 -8.88 16 21 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 22 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 23 N -0.94 -27.53 13.70 55.49 0.76 -26.77 16 24 Si 1.08 24.44 29.92 -169.99 -5.09 19.35 16 25 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.07 1.06 6.23 -3.06 -0.02 1.04 16 29 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.08 0.69 7.61 -51.93 -0.40 0.29 16 34 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.10 0.79 6.82 -51.93 -0.35 0.43 16 36 H 0.05 0.34 6.96 -51.93 -0.36 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.16 1.42 6.96 -51.93 -0.36 1.06 16 40 H 0.16 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 42 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.10 6.38 -51.93 -0.33 0.77 16 46 H 0.37 8.72 4.93 -40.82 -0.20 8.51 16 47 H 0.26 7.41 6.77 -40.82 -0.28 7.14 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.08 1.43 8.04 -51.92 -0.42 1.01 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -35.60 403.67 -9.54 -45.14 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.22 Total: 7.90 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.35 Total: -6.69 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.36 Total: -63.38 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.83 Total: -44.28 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.35 kcal Atomic # 16 Polarization: 36.35 SS G_CDS: -0.48 Total: 35.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.60 -9.54 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700270400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.105 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds