Wall clock time and date at job start Wed Apr 1 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47055 * 2 1 4 4 C 1.46500 * 119.99784 * 274.99934 * 3 2 1 5 5 C 1.53001 * 109.47366 * 275.00231 * 4 3 2 6 6 S 1.65598 * 120.00341 * 95.00238 * 3 2 1 7 7 O 1.42101 * 104.27412 * 333.92483 * 6 3 2 8 8 O 1.42098 * 104.27914 * 206.06854 * 6 3 2 9 9 C 1.81396 * 104.44907 * 89.99588 * 6 3 2 10 10 C 1.50702 * 109.46989 * 180.02562 * 9 6 3 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 6 13 13 C 1.47423 * 125.65041 * 179.97438 * 12 10 9 14 14 C 1.55132 * 104.72496 * 155.81864 * 13 12 10 15 15 H 1.08991 * 111.22629 * 279.17857 * 14 13 12 16 16 C 1.52998 * 110.90294 * 155.27628 * 14 13 12 17 17 C 1.55156 * 101.48009 * 37.29813 * 14 13 12 18 18 H 1.09004 * 110.71752 * 205.96779 * 17 14 13 19 19 N 1.46500 * 110.72153 * 82.69966 * 17 14 13 20 20 C 1.36935 * 120.00255 * 160.02251 * 19 17 14 21 21 H 1.08002 * 120.00033 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00183 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99798 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47338 * 89.99852 * 24 22 20 26 26 H 1.48501 * 109.47352 * 210.00212 * 24 22 20 27 27 H 1.48505 * 109.47239 * 330.00083 * 24 22 20 28 28 C 1.47023 * 125.65037 * 0.30479 * 12 10 9 29 29 H 1.09001 * 109.46558 * 299.99895 * 1 2 3 30 30 H 1.08995 * 109.46901 * 59.99895 * 1 2 3 31 31 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46439 * 239.99565 * 2 1 3 33 33 H 1.08995 * 109.46901 * 120.00105 * 2 1 3 34 34 H 1.08999 * 109.47539 * 35.00140 * 4 3 2 35 35 H 1.09002 * 109.47144 * 155.00275 * 4 3 2 36 36 H 1.09002 * 109.46953 * 59.99928 * 5 4 3 37 37 H 1.09002 * 109.47222 * 180.02562 * 5 4 3 38 38 H 1.09000 * 109.46840 * 299.99873 * 5 4 3 39 39 H 1.09004 * 109.47150 * 60.00299 * 9 6 3 40 40 H 1.08994 * 109.47490 * 300.00025 * 9 6 3 41 41 H 1.09004 * 110.36778 * 274.75408 * 13 12 10 42 42 H 1.09006 * 110.36423 * 37.07061 * 13 12 10 43 43 H 1.09001 * 109.47546 * 307.97531 * 16 14 13 44 44 H 1.08993 * 109.47262 * 67.98177 * 16 14 13 45 45 H 1.09003 * 109.46836 * 187.97539 * 16 14 13 46 46 H 0.97009 * 120.00092 * 340.01854 * 19 17 14 47 47 H 0.96999 * 120.00197 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.88157 * 300.44099 * 28 12 10 49 49 H 1.09005 * 109.88313 * 61.44869 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.5152 1.7838 -1.8919 6 16 2.4123 2.1202 1.4286 7 8 1.6209 1.4496 2.3998 8 8 2.2335 3.5055 1.1675 9 6 4.1697 1.7388 1.6660 10 6 4.6505 2.3645 2.9499 11 8 3.8831 3.0042 3.6374 12 7 5.9319 2.2079 3.3373 13 6 6.5328 2.7632 4.5637 14 6 7.7398 1.8367 4.8657 15 1 7.4205 0.9236 5.3678 16 6 8.7986 2.5711 5.6907 17 6 8.2609 1.5325 3.4363 18 1 8.7876 0.5784 3.4128 19 7 9.1246 2.6149 2.9582 20 6 10.0025 2.3878 1.9320 21 1 10.0585 1.4106 1.4755 22 6 10.8205 3.4136 1.4786 23 7 10.7520 4.6046 2.0347 24 14 12.0186 3.1037 0.0794 25 1 11.3536 3.3965 -1.2157 26 1 13.2034 3.9848 0.2378 27 1 12.4513 1.6833 0.1036 28 6 6.9638 1.4609 2.6033 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3618 1.8096 -1.9453 35 1 2.0922 3.1802 -1.0757 36 1 3.5812 0.7122 -2.0801 37 1 3.6194 2.3254 -2.8320 38 1 4.3117 2.0828 -1.2105 39 1 4.7442 2.1374 0.8297 40 1 4.3035 0.6583 1.7164 41 1 6.8698 3.7855 4.3918 42 1 5.8164 2.7321 5.3847 43 1 9.0508 3.5127 5.2029 44 1 8.4073 2.7720 6.6880 45 1 9.6921 1.9517 5.7691 46 1 9.0746 3.4925 3.3684 47 1 11.3238 5.3213 1.7181 48 1 6.6560 0.4220 2.4854 49 1 7.1235 1.9134 1.6246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700270402.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:53 Heat of formation + Delta-G solvation = -114.016144 kcal Electronic energy + Delta-G solvation = -30162.651892 eV Core-core repulsion = 26058.471858 eV Total energy + Delta-G solvation = -4104.180034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.37248 -39.27793 -38.38705 -38.15149 -37.07511 -35.78318 -34.14765 -32.83594 -32.36645 -31.42413 -29.72386 -29.37967 -27.20954 -25.79471 -24.60194 -23.73414 -23.11495 -20.83421 -20.72279 -19.76106 -19.45880 -18.96911 -17.98304 -17.83947 -17.77558 -17.02083 -16.73672 -16.24255 -16.05770 -15.82540 -15.47245 -15.02883 -14.79216 -14.72879 -14.58933 -14.44057 -14.29984 -13.88271 -13.74303 -13.55370 -13.37528 -13.28109 -13.23250 -13.09059 -12.99032 -12.90177 -12.78091 -12.67339 -12.63328 -12.41954 -12.26100 -12.12152 -11.97880 -11.85412 -11.66340 -11.52926 -11.46787 -11.36178 -10.96273 -10.11945 -9.84575 -9.02315 -7.91698 -5.20471 -1.00615 1.18791 1.50955 1.51515 1.53245 1.59724 1.83041 2.58218 2.71902 3.01138 3.06253 3.39698 3.59137 3.71914 3.76121 3.84397 3.91083 4.05461 4.08809 4.22894 4.28037 4.37484 4.46963 4.50362 4.55590 4.57331 4.60928 4.68689 4.69749 4.83574 4.87661 4.93323 4.96639 5.04436 5.06500 5.09041 5.19229 5.30456 5.32091 5.36266 5.43799 5.53603 5.59217 5.66935 6.26806 6.29202 6.68539 7.37065 8.11146 8.33389 9.31572 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003185 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.960349 B = 8788.233888 C =10226.661816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.110 3.890 3 N -0.990 5.990 4 C 0.101 3.899 5 C -0.180 4.180 6 S 2.643 3.357 7 O -0.971 6.971 8 O -0.985 6.985 9 C -0.658 4.658 10 C 0.541 3.459 11 O -0.594 6.594 12 N -0.593 5.593 13 C 0.106 3.894 14 C -0.098 4.098 15 H 0.115 0.885 16 C -0.126 4.126 17 C 0.161 3.839 18 H 0.089 0.911 19 N -0.725 5.725 20 C -0.234 4.234 21 H 0.087 0.913 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.968 3.032 25 H -0.291 1.291 26 H -0.305 1.305 27 H -0.265 1.265 28 C 0.072 3.928 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.178 0.822 40 H 0.199 0.801 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.375 0.625 47 H 0.248 0.752 48 H 0.102 0.898 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 -14.784 -5.720 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 N -0.830 5.830 4 C -0.023 4.023 5 C -0.239 4.239 6 S 2.733 3.267 7 O -0.961 6.961 8 O -0.975 6.975 9 C -0.786 4.786 10 C 0.328 3.672 11 O -0.478 6.478 12 N -0.323 5.323 13 C -0.017 4.017 14 C -0.118 4.118 15 H 0.133 0.867 16 C -0.184 4.184 17 C 0.051 3.949 18 H 0.107 0.893 19 N -0.365 5.365 20 C -0.366 4.366 21 H 0.104 0.896 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.798 3.202 25 H -0.218 1.218 26 H -0.232 1.232 27 H -0.189 1.189 28 C -0.053 4.053 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.196 0.804 40 H 0.216 0.784 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.208 0.792 47 H 0.057 0.943 48 H 0.120 0.880 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.338 -14.064 -4.995 22.129 hybrid contribution 1.453 0.777 -0.746 1.809 sum -14.885 -13.287 -5.741 20.762 Atomic orbital electron populations 1.22248 0.96055 1.03415 1.01844 1.21585 0.94849 0.79910 1.05084 1.57553 1.78931 1.25058 1.21495 1.21602 0.99822 0.96570 0.84331 1.22340 0.95920 1.03938 1.01687 1.03940 0.76276 0.73283 0.73163 1.93522 1.65495 1.76048 1.61059 1.93508 1.85241 1.34134 1.84600 1.31134 1.28740 1.14985 1.03766 1.19407 0.81694 0.80140 0.85920 1.90801 1.55083 1.44548 1.57320 1.48403 1.08435 1.51300 1.24191 1.22473 0.95380 0.97291 0.86541 1.22651 0.93803 0.99213 0.96136 0.86704 1.21482 0.97950 0.99990 0.99002 1.21505 0.88969 0.93112 0.91298 0.89292 1.42666 1.43284 1.10288 1.40268 1.19654 1.11932 0.96330 1.08661 0.89560 1.25506 1.02630 0.95841 1.02676 1.69820 1.43706 1.02598 1.45945 0.85225 0.78234 0.77479 0.79299 1.21819 1.23214 1.18930 1.23335 0.88576 0.96581 0.96799 0.94495 0.91567 0.89464 0.86685 0.89570 0.87237 0.90583 0.90007 0.90095 0.93470 0.80401 0.78384 0.93156 0.90076 0.94421 0.91122 0.92078 0.79172 0.94322 0.87960 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 10.24 71.98 0.74 -1.59 16 2 C 0.11 1.29 5.98 86.38 0.52 1.80 16 3 N -0.99 -16.90 2.71 -515.80 -1.40 -18.30 16 4 C 0.10 1.44 6.38 86.38 0.55 1.99 16 5 C -0.18 -2.05 10.24 71.98 0.74 -1.31 16 6 S 2.64 71.86 4.51 -56.49 -0.25 71.60 16 7 O -0.97 -31.62 16.75 -127.64 -2.14 -33.76 16 8 O -0.98 -35.06 16.53 -127.64 -2.11 -37.17 16 9 C -0.66 -14.93 5.85 71.24 0.42 -14.52 16 10 C 0.54 18.03 7.87 87.66 0.69 18.72 16 11 O -0.59 -24.69 16.12 -3.04 -0.05 -24.74 16 12 N -0.59 -18.77 3.32 -811.34 -2.70 -21.47 16 13 C 0.11 3.38 6.35 86.93 0.55 3.93 16 14 C -0.10 -2.72 3.53 -9.32 -0.03 -2.76 16 15 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.13 -3.69 8.85 71.98 0.64 -3.05 16 17 C 0.16 5.18 3.36 46.18 0.16 5.34 16 18 H 0.09 2.62 8.12 -2.38 -0.02 2.60 16 19 N -0.73 -31.88 4.61 -317.33 -1.46 -33.34 16 20 C -0.23 -11.49 9.98 84.04 0.84 -10.65 16 21 H 0.09 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 23 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 24 Si 0.97 43.19 29.55 68.60 2.03 45.22 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 28 C 0.07 2.04 6.22 86.73 0.54 2.58 16 29 H 0.04 0.70 7.90 -2.39 -0.02 0.69 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.12 0.59 8.11 -2.39 -0.02 0.57 16 33 H 0.09 0.94 7.61 -2.39 -0.02 0.92 16 34 H 0.11 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.08 1.41 6.82 -2.39 -0.02 1.39 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.63 6.96 -2.39 -0.02 0.61 16 39 H 0.18 3.35 6.96 -2.39 -0.02 3.33 16 40 H 0.20 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.05 1.86 7.99 -2.39 -0.02 1.84 16 42 H 0.08 2.48 8.03 -2.38 -0.02 2.46 16 43 H 0.04 1.35 6.37 -2.39 -0.02 1.33 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.37 18.49 6.10 -92.70 -0.57 17.92 16 47 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 48 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 49 H 0.06 2.08 8.05 -2.38 -0.02 2.07 16 Total: -1.00 -79.03 405.38 -0.63 -79.66 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.37 Total: 31.78 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.80 Total: -3.01 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -5.28 Total: -129.58 kcal Atomic # 8 Polarization: -91.37 SS G_CDS: -4.30 Total: -95.67 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 71.86 SS G_CDS: -0.25 Total: 71.60 kcal Total: -79.03 -0.63 -79.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700270402.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.357 kcal (2) G-P(sol) polarization free energy of solvation -79.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds