Wall clock time and date at job start Wed Apr 1 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00147 * 2 1 4 4 C 1.50698 * 109.47127 * 84.99353 * 3 2 1 5 5 O 1.21278 * 120.00269 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99691 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99619 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46675 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.42928 * 295.06840 * 8 7 6 10 10 C 1.54306 * 109.18898 * 175.34780 * 8 7 6 11 11 C 1.47091 * 110.29879 * 168.69054 * 10 8 7 12 12 C 1.52575 * 114.32503 * 62.73228 * 11 10 8 13 13 C 1.50880 * 109.35329 * 274.98458 * 12 11 10 14 14 C 1.53944 * 110.09651 * 91.88572 * 13 12 11 15 15 N 1.44583 * 109.44854 * 55.00071 * 8 7 6 16 16 C 1.36928 * 118.64654 * 30.76090 * 15 8 7 17 17 H 1.08003 * 119.99753 * 26.72544 * 16 15 8 18 18 C 1.38805 * 120.00471 * 206.72902 * 16 15 8 19 19 N 1.31619 * 120.00510 * 201.59360 * 18 16 15 20 20 Si 1.86806 * 119.99760 * 21.59456 * 18 16 15 21 21 H 1.48499 * 109.46931 * 265.95242 * 20 18 16 22 22 H 1.48495 * 109.47197 * 145.95363 * 20 18 16 23 23 H 1.48498 * 109.47228 * 25.94963 * 20 18 16 24 24 S 1.65599 * 119.99729 * 179.97438 * 2 1 3 25 25 C 1.81400 * 104.45291 * 270.00422 * 24 2 1 26 26 O 1.42093 * 104.27956 * 26.07721 * 24 2 1 27 27 O 1.42103 * 104.27421 * 153.93159 * 24 2 1 28 28 H 1.09004 * 109.46878 * 90.00593 * 1 2 3 29 29 H 1.09005 * 109.47419 * 210.00629 * 1 2 3 30 30 H 1.09004 * 109.47130 * 330.00321 * 1 2 3 31 31 H 1.08994 * 109.46554 * 324.99628 * 3 2 1 32 32 H 1.08994 * 109.46877 * 204.99575 * 3 2 1 33 33 H 0.96996 * 119.99917 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.47510 * 60.00165 * 7 6 4 35 35 H 1.09003 * 109.47285 * 300.00122 * 7 6 4 36 36 H 1.09001 * 109.40354 * 48.40072 * 10 8 7 37 37 H 1.09001 * 109.14364 * 288.81707 * 10 8 7 38 38 H 1.09001 * 108.51224 * 301.48083 * 11 10 8 39 39 H 1.08992 * 108.51747 * 183.98993 * 11 10 8 40 40 H 1.08992 * 109.49044 * 155.01923 * 12 11 10 41 41 H 1.08995 * 109.48981 * 34.94447 * 12 11 10 42 42 H 1.09000 * 109.36982 * 331.69323 * 13 12 11 43 43 H 1.08998 * 109.36536 * 212.07924 * 13 12 11 44 44 H 1.09000 * 108.94706 * 198.75020 * 14 13 12 45 45 H 1.08998 * 108.94440 * 80.12303 * 14 13 12 46 46 H 0.96998 * 119.99731 * 5.13538 * 19 18 16 47 47 H 1.08997 * 109.47224 * 59.99847 * 25 24 2 48 48 H 1.09000 * 109.46900 * 180.02562 * 25 24 2 49 49 H 1.09005 * 109.46880 * 300.00202 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8780 1.1233 2.3337 6 7 2.9858 2.9239 1.6607 7 6 3.1261 3.4067 3.0367 8 6 3.8910 4.7318 3.0366 9 1 4.9084 4.5631 2.6835 10 6 3.9334 5.2931 4.4733 11 6 4.8816 6.4146 4.5553 12 6 4.5113 7.6152 3.6897 13 6 5.0302 7.4011 2.2893 14 6 3.9522 6.7242 1.4234 15 7 3.2269 5.6710 2.1606 16 6 1.8684 5.5833 2.0130 17 1 1.2650 5.1655 2.8053 18 6 1.2668 6.0312 0.8450 19 7 -0.0103 6.3494 0.8427 20 14 2.2698 6.1823 -0.7237 21 1 2.7827 7.5701 -0.8515 22 1 1.4118 5.8621 -1.8926 23 1 3.4123 5.2350 -0.6739 24 16 2.2929 -1.4342 0.0006 25 6 2.5192 -1.8255 1.7574 26 8 1.3970 -2.3563 -0.6043 27 8 3.5394 -1.1194 -0.6047 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0042 -0.5895 32 1 3.1858 1.1176 -0.4342 33 1 3.3567 3.4375 0.9262 34 1 3.6732 2.6710 3.6260 35 1 2.1379 3.5581 3.4712 36 1 4.2450 4.5063 5.1604 37 1 2.9384 5.6410 4.7507 38 1 5.8658 6.0587 4.2505 39 1 4.9420 6.7417 5.5932 40 1 4.9572 8.5171 4.1089 41 1 3.4270 7.7237 3.6631 42 1 5.9159 6.7668 2.3250 43 1 5.2945 8.3633 1.8507 44 1 4.4279 6.2805 0.5488 45 1 3.2393 7.4790 1.0918 46 1 -0.5133 6.3425 1.6721 47 1 1.5450 -1.9179 2.2375 48 1 3.0624 -2.7657 1.8531 49 1 3.0865 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700525718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:30 Heat of formation + Delta-G solvation = -78.950707 kcal Electronic energy + Delta-G solvation = -31071.097997 eV Core-core repulsion = 26968.438514 eV Total energy + Delta-G solvation = -4102.659483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -39.53825 -38.42352 -37.19245 -36.09697 -35.69927 -34.60701 -33.66197 -32.09425 -31.32198 -29.43395 -28.98069 -27.09635 -25.78938 -24.90223 -23.39000 -22.26905 -20.34289 -19.80434 -19.57061 -18.85620 -17.78228 -17.33610 -16.78386 -16.41849 -16.07079 -15.67640 -15.43881 -15.07648 -14.64579 -14.37111 -14.22795 -14.04839 -13.80574 -13.41516 -13.23722 -13.14477 -12.99356 -12.79391 -12.70627 -12.44072 -12.32321 -12.25055 -12.14774 -12.06355 -11.63473 -11.58059 -11.42558 -11.28581 -11.07306 -10.93536 -10.52586 -10.23696 -10.22105 -10.20041 -9.97578 -9.83525 -9.51064 -9.15068 -8.85325 -8.64917 -8.41762 -7.05679 -6.39168 -3.40448 0.23774 2.48375 2.98601 3.32591 3.35094 3.55208 3.66755 3.84375 4.11552 4.48978 4.59427 4.74246 4.87077 4.98501 5.11940 5.15922 5.25637 5.31022 5.34229 5.43368 5.46893 5.63445 5.67327 5.69601 5.74953 5.80187 5.86995 5.88266 6.01524 6.09866 6.12955 6.26849 6.33291 6.37453 6.38236 6.42686 6.51691 6.57060 6.66268 6.73593 6.85758 6.92742 7.03148 7.97613 8.04203 8.37619 8.64478 8.96521 9.54651 10.05107 11.04890 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.003652 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.580388 B = 7664.507002 C = 8570.248155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.980 5.980 3 C 0.092 3.908 4 C 0.488 3.512 5 O -0.555 6.555 6 N -0.690 5.690 7 C 0.132 3.868 8 C 0.174 3.826 9 H 0.047 0.953 10 C -0.135 4.135 11 C -0.102 4.102 12 C -0.109 4.109 13 C -0.133 4.133 14 C 0.124 3.876 15 N -0.595 5.595 16 C -0.341 4.341 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.916 5.916 20 Si 1.049 2.951 21 H -0.297 1.297 22 H -0.302 1.302 23 H -0.286 1.286 24 S 2.612 3.388 25 C -0.661 4.661 26 O -0.959 6.959 27 O -0.961 6.961 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.405 0.595 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.023 0.977 45 H 0.069 0.931 46 H 0.264 0.736 47 H 0.128 0.872 48 H 0.119 0.881 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 -8.375 2.169 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.816 5.816 3 C -0.037 4.037 4 C 0.271 3.729 5 O -0.435 6.435 6 N -0.340 5.340 7 C 0.007 3.993 8 C 0.065 3.935 9 H 0.065 0.935 10 C -0.176 4.176 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.172 4.172 14 C -0.001 4.001 15 N -0.318 5.318 16 C -0.470 4.470 17 H 0.085 0.915 18 C -0.209 4.209 19 N -0.555 5.555 20 Si 0.881 3.119 21 H -0.225 1.225 22 H -0.230 1.230 23 H -0.213 1.213 24 S 2.706 3.294 25 C -0.811 4.811 26 O -0.949 6.949 27 O -0.951 6.951 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.241 0.759 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.147 0.853 48 H 0.137 0.863 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.786 -8.938 0.444 11.862 hybrid contribution 0.135 0.400 2.185 2.225 sum 7.921 -8.537 2.629 11.939 Atomic orbital electron populations 1.21458 0.77548 1.03476 1.02057 1.56966 1.15505 1.19897 1.89198 1.21319 0.99885 0.87179 0.95326 1.21105 0.78380 0.81774 0.91605 1.90618 1.48963 1.57824 1.46110 1.45707 1.55951 1.21974 1.10366 1.21476 1.01177 0.94229 0.82369 1.20421 0.94536 0.88056 0.90496 0.93506 1.21244 1.00300 0.97458 0.98563 1.20296 0.98823 0.96049 0.98780 1.20957 1.02669 0.96314 0.94711 1.21863 0.98754 0.99849 0.96707 1.21700 0.93984 0.91171 0.93201 1.44031 1.05005 1.30684 1.52111 1.20120 0.81430 1.43536 1.01909 0.91492 1.26031 0.97143 0.97464 1.00214 1.70830 1.08851 1.45287 1.30543 0.84085 0.74302 0.76204 0.77273 1.22454 1.23001 1.21317 1.04827 0.73740 0.73137 0.77743 1.30455 1.12090 1.11418 1.27148 1.93592 1.64689 1.62484 1.74148 1.93578 1.44216 1.83059 1.74272 0.92147 0.91260 0.90464 0.86486 0.86173 0.75905 0.92947 0.91080 0.93073 0.91673 0.93393 0.93813 0.93628 0.90523 0.92932 0.92604 0.95931 0.91262 0.92549 0.85295 0.86251 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 10.20 59.85 0.61 1.82 16 2 N -0.98 -12.86 2.61 -123.05 -0.32 -13.18 16 3 C 0.09 1.28 6.12 -5.19 -0.03 1.24 16 4 C 0.49 8.01 7.89 -10.98 -0.09 7.92 16 5 O -0.56 -10.02 15.01 5.56 0.08 -9.93 16 6 N -0.69 -11.70 4.72 -60.29 -0.28 -11.99 16 7 C 0.13 2.27 4.50 -4.04 -0.02 2.25 16 8 C 0.17 2.93 2.17 -68.27 -0.15 2.78 16 9 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 10 C -0.13 -2.09 5.04 -28.88 -0.15 -2.24 16 11 C -0.10 -1.45 5.15 -29.78 -0.15 -1.60 16 12 C -0.11 -1.68 5.51 -28.01 -0.15 -1.83 16 13 C -0.13 -2.06 5.71 -27.30 -0.16 -2.21 16 14 C 0.12 2.35 4.01 -2.94 -0.01 2.34 16 15 N -0.59 -11.75 1.57 -164.81 -0.26 -12.01 16 16 C -0.34 -8.10 7.96 -15.07 -0.12 -8.22 16 17 H 0.07 1.79 6.86 -52.48 -0.36 1.43 16 18 C -0.01 -0.17 5.12 -17.43 -0.09 -0.26 16 19 N -0.92 -26.14 13.70 55.49 0.76 -25.38 16 20 Si 1.05 23.37 24.46 -169.99 -4.16 19.21 16 21 H -0.30 -6.51 6.77 56.52 0.38 -6.12 16 22 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -5.64 6.43 56.52 0.36 -5.28 16 24 S 2.61 32.78 6.02 -107.50 -0.65 32.13 16 25 C -0.66 -6.83 10.52 101.05 1.06 -5.76 16 26 O -0.96 -14.06 17.09 -57.54 -0.98 -15.05 16 27 O -0.96 -14.27 16.53 -57.54 -0.95 -15.22 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 30 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 31 H 0.12 1.55 8.11 -51.93 -0.42 1.13 16 32 H 0.12 1.48 6.82 -51.93 -0.35 1.13 16 33 H 0.41 6.86 8.08 -40.82 -0.33 6.53 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.43 6.80 -51.93 -0.35 1.07 16 36 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.64 7.36 -51.93 -0.38 0.25 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 42 H 0.05 0.75 7.32 -51.93 -0.38 0.37 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.02 0.43 5.88 -51.93 -0.31 0.12 16 45 H 0.07 1.48 5.34 -51.93 -0.28 1.20 16 46 H 0.26 7.63 8.73 -40.82 -0.36 7.28 16 47 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.12 0.94 8.14 -51.92 -0.42 0.52 16 49 H 0.13 1.52 7.22 -51.92 -0.37 1.15 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -31.23 385.05 -8.58 -39.81 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.18 Total: 9.59 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 0.56 Total: -3.79 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.10 Total: -62.56 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.85 Total: -40.20 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.16 Total: 19.21 kcal Atomic # 16 Polarization: 32.78 SS G_CDS: -0.65 Total: 32.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.23 -8.58 -39.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700525718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.142 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds