Wall clock time and date at job start Wed Apr 1 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00147 * 2 1 4 4 C 1.50698 * 109.47127 * 84.99353 * 3 2 1 5 5 O 1.21278 * 120.00269 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99691 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99619 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46675 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.42928 * 295.06840 * 8 7 6 10 10 C 1.54306 * 109.18898 * 175.34780 * 8 7 6 11 11 C 1.47091 * 110.29879 * 168.69054 * 10 8 7 12 12 C 1.52575 * 114.32503 * 62.73228 * 11 10 8 13 13 C 1.50880 * 109.35329 * 274.98458 * 12 11 10 14 14 C 1.53944 * 110.09651 * 91.88572 * 13 12 11 15 15 N 1.44583 * 109.44854 * 55.00071 * 8 7 6 16 16 C 1.36928 * 118.64654 * 30.76090 * 15 8 7 17 17 H 1.08003 * 119.99753 * 26.72544 * 16 15 8 18 18 C 1.38805 * 120.00471 * 206.72902 * 16 15 8 19 19 N 1.31619 * 120.00510 * 201.59360 * 18 16 15 20 20 Si 1.86806 * 119.99760 * 21.59456 * 18 16 15 21 21 H 1.48499 * 109.46931 * 265.95242 * 20 18 16 22 22 H 1.48495 * 109.47197 * 145.95363 * 20 18 16 23 23 H 1.48498 * 109.47228 * 25.94963 * 20 18 16 24 24 S 1.65599 * 119.99729 * 179.97438 * 2 1 3 25 25 C 1.81400 * 104.45291 * 270.00422 * 24 2 1 26 26 O 1.42093 * 104.27956 * 26.07721 * 24 2 1 27 27 O 1.42103 * 104.27421 * 153.93159 * 24 2 1 28 28 H 1.09004 * 109.46878 * 90.00593 * 1 2 3 29 29 H 1.09005 * 109.47419 * 210.00629 * 1 2 3 30 30 H 1.09004 * 109.47130 * 330.00321 * 1 2 3 31 31 H 1.08994 * 109.46554 * 324.99628 * 3 2 1 32 32 H 1.08994 * 109.46877 * 204.99575 * 3 2 1 33 33 H 0.96996 * 119.99917 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.47510 * 60.00165 * 7 6 4 35 35 H 1.09003 * 109.47285 * 300.00122 * 7 6 4 36 36 H 1.09001 * 109.40354 * 48.40072 * 10 8 7 37 37 H 1.09001 * 109.14364 * 288.81707 * 10 8 7 38 38 H 1.09001 * 108.51224 * 301.48083 * 11 10 8 39 39 H 1.08992 * 108.51747 * 183.98993 * 11 10 8 40 40 H 1.08992 * 109.49044 * 155.01923 * 12 11 10 41 41 H 1.08995 * 109.48981 * 34.94447 * 12 11 10 42 42 H 1.09000 * 109.36982 * 331.69323 * 13 12 11 43 43 H 1.08998 * 109.36536 * 212.07924 * 13 12 11 44 44 H 1.09000 * 108.94706 * 198.75020 * 14 13 12 45 45 H 1.08998 * 108.94440 * 80.12303 * 14 13 12 46 46 H 0.96998 * 119.99731 * 5.13538 * 19 18 16 47 47 H 1.08997 * 109.47224 * 59.99847 * 25 24 2 48 48 H 1.09000 * 109.46900 * 180.02562 * 25 24 2 49 49 H 1.09005 * 109.46880 * 300.00202 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8780 1.1233 2.3337 6 7 2.9858 2.9239 1.6607 7 6 3.1261 3.4067 3.0367 8 6 3.8910 4.7318 3.0366 9 1 4.9084 4.5631 2.6835 10 6 3.9334 5.2931 4.4733 11 6 4.8816 6.4146 4.5553 12 6 4.5113 7.6152 3.6897 13 6 5.0302 7.4011 2.2893 14 6 3.9522 6.7242 1.4234 15 7 3.2269 5.6710 2.1606 16 6 1.8684 5.5833 2.0130 17 1 1.2650 5.1655 2.8053 18 6 1.2668 6.0312 0.8450 19 7 -0.0103 6.3494 0.8427 20 14 2.2698 6.1823 -0.7237 21 1 2.7827 7.5701 -0.8515 22 1 1.4118 5.8621 -1.8926 23 1 3.4123 5.2350 -0.6739 24 16 2.2929 -1.4342 0.0006 25 6 2.5192 -1.8255 1.7574 26 8 1.3970 -2.3563 -0.6043 27 8 3.5394 -1.1194 -0.6047 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0042 -0.5895 32 1 3.1858 1.1176 -0.4342 33 1 3.3567 3.4375 0.9262 34 1 3.6732 2.6710 3.6260 35 1 2.1379 3.5581 3.4712 36 1 4.2450 4.5063 5.1604 37 1 2.9384 5.6410 4.7507 38 1 5.8658 6.0587 4.2505 39 1 4.9420 6.7417 5.5932 40 1 4.9572 8.5171 4.1089 41 1 3.4270 7.7237 3.6631 42 1 5.9159 6.7668 2.3250 43 1 5.2945 8.3633 1.8507 44 1 4.4279 6.2805 0.5488 45 1 3.2393 7.4790 1.0918 46 1 -0.5133 6.3425 1.6721 47 1 1.5450 -1.9179 2.2375 48 1 3.0624 -2.7657 1.8531 49 1 3.0865 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700525718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:29 Heat of formation + Delta-G solvation = -102.392187 kcal Electronic energy + Delta-G solvation = -31072.114495 eV Core-core repulsion = 26968.438514 eV Total energy + Delta-G solvation = -4103.675982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88495 -39.79845 -38.26942 -37.17924 -36.80051 -35.95863 -35.28463 -33.42921 -33.09155 -30.31619 -30.14392 -28.47370 -27.18890 -26.04251 -25.04574 -23.63289 -21.67834 -21.19907 -21.00276 -19.94241 -18.98977 -18.73828 -18.16429 -17.55066 -17.18989 -17.14544 -16.79619 -16.39519 -15.96887 -15.71232 -15.57075 -15.39464 -15.03225 -14.60211 -14.44915 -14.30386 -14.12720 -14.00178 -13.92253 -13.76553 -13.66502 -13.51837 -13.36703 -13.23805 -12.96163 -12.90774 -12.62930 -12.51327 -12.47664 -12.06668 -12.04488 -11.71169 -11.49116 -11.44229 -11.31602 -11.21140 -11.07878 -10.85036 -10.55307 -9.97658 -9.82909 -8.83262 -8.42451 -5.37014 -0.73981 1.46657 1.51262 1.57633 1.68135 1.76287 2.42777 2.65995 2.85463 3.10701 3.13966 3.42751 3.61075 3.87537 3.93929 4.02223 4.07628 4.11724 4.18458 4.29282 4.33650 4.35228 4.43616 4.49359 4.53955 4.68828 4.77195 4.82487 4.85486 4.89980 4.97126 5.01117 5.01274 5.11281 5.13086 5.17003 5.33645 5.34216 5.39285 5.48848 5.52951 5.63390 5.70280 5.98420 6.38480 6.69980 7.04675 7.32333 7.77197 8.15752 9.00710 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.003652 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.580388 B = 7664.507002 C = 8570.248155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.985 5.985 3 C 0.094 3.906 4 C 0.484 3.516 5 O -0.574 6.574 6 N -0.695 5.695 7 C 0.137 3.863 8 C 0.171 3.829 9 H 0.077 0.923 10 C -0.128 4.128 11 C -0.102 4.102 12 C -0.108 4.108 13 C -0.126 4.126 14 C 0.117 3.883 15 N -0.600 5.600 16 C -0.296 4.296 17 H 0.025 0.975 18 C -0.062 4.062 19 N -0.964 5.964 20 Si 1.084 2.916 21 H -0.291 1.291 22 H -0.320 1.320 23 H -0.240 1.240 24 S 2.623 3.377 25 C -0.648 4.648 26 O -0.982 6.982 27 O -0.984 6.984 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.243 0.757 47 H 0.137 0.863 48 H 0.148 0.852 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.673 -9.248 2.372 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.821 5.821 3 C -0.035 4.035 4 C 0.268 3.732 5 O -0.455 6.455 6 N -0.344 5.344 7 C 0.012 3.988 8 C 0.064 3.936 9 H 0.095 0.905 10 C -0.168 4.168 11 C -0.139 4.139 12 C -0.146 4.146 13 C -0.164 4.164 14 C -0.007 4.007 15 N -0.324 5.324 16 C -0.426 4.426 17 H 0.043 0.957 18 C -0.257 4.257 19 N -0.607 5.607 20 Si 0.912 3.088 21 H -0.218 1.218 22 H -0.250 1.250 23 H -0.164 1.164 24 S 2.719 3.281 25 C -0.801 4.801 26 O -0.972 6.972 27 O -0.975 6.975 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.155 0.845 48 H 0.167 0.833 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.551 -9.819 0.651 15.174 hybrid contribution -1.022 0.638 2.305 2.601 sum 10.529 -9.181 2.956 14.279 Atomic orbital electron populations 1.21551 0.77252 1.03498 1.02729 1.56990 1.15838 1.19792 1.89431 1.21359 1.01052 0.87606 0.93528 1.21612 0.77594 0.81386 0.92564 1.90599 1.49500 1.58333 1.47037 1.45757 1.56261 1.22223 1.10189 1.21393 0.99329 0.95235 0.82826 1.20637 0.95316 0.87003 0.90653 0.90526 1.21176 0.98954 0.98778 0.97938 1.20288 0.99220 0.94853 0.99531 1.20940 1.00037 0.98077 0.95538 1.21818 0.98077 1.00831 0.95719 1.21784 0.94231 0.90350 0.94352 1.44061 1.03564 1.32124 1.52685 1.19760 0.83228 1.39940 0.99692 0.95723 1.27042 0.97057 0.98192 1.03360 1.70973 1.10590 1.49870 1.29297 0.83678 0.74346 0.77527 0.73254 1.21847 1.24990 1.16428 1.04419 0.72769 0.72411 0.78489 1.30317 1.12990 1.12690 1.24059 1.93561 1.65188 1.62960 1.75511 1.93540 1.44985 1.83305 1.75650 0.91215 0.89800 0.91914 0.86099 0.84354 0.75753 0.90879 0.95096 0.90695 0.95313 0.90936 0.92410 0.91508 0.94770 0.90324 0.90957 0.94450 0.94302 0.94806 0.84491 0.83327 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.26 10.20 127.77 1.30 3.57 16 2 N -0.99 -24.98 2.61 -543.23 -1.42 -26.40 16 3 C 0.09 2.50 6.12 85.63 0.52 3.02 16 4 C 0.48 15.53 7.89 87.65 0.69 16.22 16 5 O -0.57 -20.47 15.01 -3.02 -0.05 -20.52 16 6 N -0.69 -22.77 4.72 -463.05 -2.19 -24.95 16 7 C 0.14 4.60 4.50 86.38 0.39 4.99 16 8 C 0.17 5.41 2.17 45.79 0.10 5.51 16 9 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 10 C -0.13 -3.73 5.04 29.20 0.15 -3.58 16 11 C -0.10 -2.53 5.15 28.62 0.15 -2.38 16 12 C -0.11 -3.06 5.51 29.76 0.16 -2.90 16 13 C -0.13 -3.42 5.71 30.22 0.17 -3.25 16 14 C 0.12 4.15 4.01 86.49 0.35 4.50 16 15 N -0.60 -23.18 1.57 -675.34 -1.06 -24.24 16 16 C -0.30 -14.53 7.96 84.03 0.67 -13.86 16 17 H 0.02 1.42 6.86 -2.91 -0.02 1.40 16 18 C -0.06 -3.32 5.12 84.86 0.43 -2.88 16 19 N -0.96 -58.20 13.70 21.65 0.30 -57.90 16 20 Si 1.08 47.11 24.46 68.60 1.68 48.78 16 21 H -0.29 -12.31 6.77 99.48 0.67 -11.63 16 22 H -0.32 -14.88 7.11 99.48 0.71 -14.17 16 23 H -0.24 -8.50 6.43 99.48 0.64 -7.86 16 24 S 2.62 62.08 6.02 -56.49 -0.34 61.74 16 25 C -0.65 -11.88 10.52 113.37 1.19 -10.69 16 26 O -0.98 -27.65 17.09 -127.65 -2.18 -29.83 16 27 O -0.98 -27.71 16.53 -127.65 -2.11 -29.82 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.72 7.79 -2.38 -0.02 1.70 16 30 H 0.06 1.67 8.07 -2.39 -0.02 1.65 16 31 H 0.12 3.12 8.11 -2.39 -0.02 3.10 16 32 H 0.14 3.16 6.82 -2.39 -0.02 3.14 16 33 H 0.41 12.92 8.08 -92.71 -0.75 12.17 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.03 1.28 6.80 -2.39 -0.02 1.27 16 36 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.52 7.36 -2.39 -0.02 1.50 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.03 1.25 7.48 -2.39 -0.02 1.23 16 42 H 0.08 1.78 7.32 -2.39 -0.02 1.77 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.24 5.88 -2.39 -0.01 1.23 16 45 H 0.04 1.63 5.34 -2.39 -0.01 1.61 16 46 H 0.24 15.15 8.73 -92.71 -0.81 14.34 16 47 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.13 2.63 7.22 -2.39 -0.02 2.61 16 Total: -1.00 -71.49 385.05 -1.02 -72.51 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.06 Total: 32.36 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 6.28 Total: -1.73 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -4.36 Total: -133.49 kcal Atomic # 8 Polarization: -75.83 SS G_CDS: -4.34 Total: -80.17 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.68 Total: 48.78 kcal Atomic # 16 Polarization: 62.08 SS G_CDS: -0.34 Total: 61.74 kcal Total: -71.49 -1.02 -72.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700525718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.886 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds