Wall clock time and date at job start Wed Apr 1 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 6 6 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 7 7 C 1.53003 * 109.47004 * 185.00070 * 4 3 2 8 8 N 1.46896 * 109.47241 * 179.97438 * 7 4 3 9 9 C 1.46896 * 110.99968 * 180.02562 * 8 7 4 10 10 C 1.50701 * 109.47124 * 179.97438 * 9 8 7 11 11 O 1.21292 * 119.99920 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00169 * 180.02562 * 10 9 8 13 13 C 1.37104 * 119.99951 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99840 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99895 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99994 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99946 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47305 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47161 * 120.00368 * 17 15 13 20 20 H 1.48498 * 109.46903 * 240.00093 * 17 15 13 21 21 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00410 * 179.97438 * 21 2 1 23 23 C 1.50703 * 119.99541 * 359.97438 * 21 2 1 24 24 F 1.39890 * 110.43749 * 308.90828 * 23 21 2 25 25 C 1.54812 * 110.48385 * 186.22223 * 23 21 2 26 26 C 1.54998 * 102.08983 * 220.44274 * 25 23 21 27 27 O 1.44383 * 103.49071 * 37.02734 * 26 25 23 28 28 C 1.43741 * 106.97398 * 319.93491 * 27 26 25 29 29 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 32 32 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 33 33 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 34 34 H 0.96703 * 114.00490 * 59.99746 * 6 4 3 35 35 H 1.09002 * 109.47349 * 300.00327 * 7 4 3 36 36 H 1.09000 * 109.46923 * 59.99778 * 7 4 3 37 37 H 1.00897 * 111.00194 * 56.04193 * 8 7 4 38 38 H 1.08999 * 109.47250 * 299.99972 * 9 8 7 39 39 H 1.09000 * 109.47585 * 60.00269 * 9 8 7 40 40 H 0.97001 * 119.99969 * 359.97438 * 12 10 9 41 41 H 0.97003 * 120.00236 * 179.97438 * 16 15 13 42 42 H 1.09001 * 110.90822 * 338.63582 * 25 23 21 43 43 H 1.08996 * 110.90827 * 102.24652 * 25 23 21 44 44 H 1.09000 * 110.61984 * 278.52014 * 26 25 23 45 45 H 1.09008 * 110.75220 * 155.58748 * 26 25 23 46 46 H 1.08998 * 109.88478 * 267.09405 * 28 27 26 47 47 H 1.09001 * 109.87586 * 145.93784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7549 1.9815 6 8 3.3210 0.7725 2.0813 7 6 3.1061 3.0938 1.4443 8 7 3.3505 3.5181 2.8292 9 6 3.9782 4.8455 2.8702 10 6 4.2123 5.2465 4.3038 11 8 3.8887 4.4996 5.2031 12 7 4.7815 6.4350 4.5869 13 6 4.9950 6.7995 5.8912 14 1 4.7075 6.1341 6.6918 15 6 5.5822 8.0246 6.1830 16 7 5.9324 8.8340 5.2088 17 14 5.8738 8.5209 7.9601 18 1 5.3946 7.4416 8.8605 19 1 7.3257 8.7408 8.1807 20 1 5.1334 9.7747 8.2516 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 9 0.4285 -2.4839 1.0199 25 6 2.3630 -3.6624 0.1560 26 6 1.7721 -4.7001 -0.8321 27 8 1.3106 -3.8903 -1.9348 28 6 0.7176 -2.7095 -1.3690 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 3.1499 1.1384 -0.5139 33 1 1.6084 2.0284 -0.5139 34 1 4.1838 0.6810 1.6541 35 1 4.0524 3.0493 0.9052 36 1 2.4437 3.8092 0.9570 37 1 3.9094 2.8381 3.3225 38 1 4.9307 4.8135 2.3412 39 1 3.3216 5.5729 2.3926 40 1 5.0407 7.0322 3.8677 41 1 6.3420 9.6894 5.4124 42 1 3.3732 -3.3771 -0.1376 43 1 2.3494 -4.0453 1.1764 44 1 0.9403 -5.2356 -0.3745 45 1 2.5405 -5.3984 -1.1641 46 1 -0.3540 -2.8595 -1.2373 47 1 0.8969 -1.8554 -2.0219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700947614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:39 Heat of formation + Delta-G solvation = -196.154580 kcal Electronic energy + Delta-G solvation = -30896.812496 eV Core-core repulsion = 26222.857496 eV Total energy + Delta-G solvation = -4673.955000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.68735 -40.67212 -39.26975 -38.39395 -37.67387 -35.84196 -34.68363 -33.75801 -32.35079 -31.24569 -30.92021 -29.73116 -27.84312 -26.90149 -25.25286 -24.05268 -23.46608 -22.39708 -21.64698 -20.07983 -19.24823 -18.09749 -17.89188 -17.55988 -17.38247 -16.82609 -16.35879 -16.07508 -15.92405 -15.69793 -15.57351 -15.25808 -14.88483 -14.67836 -14.46668 -14.42689 -14.21511 -13.73221 -13.65788 -13.43984 -13.31530 -12.99944 -12.90383 -12.64600 -12.41685 -12.21285 -12.09735 -12.03366 -11.76634 -11.57715 -11.50685 -11.39282 -11.17850 -11.03399 -10.58976 -10.39190 -10.33228 -10.21483 -10.08094 -9.50997 -9.03390 -8.44143 -8.06243 -7.94816 -6.40883 -3.81541 1.91984 2.32437 3.15413 3.17267 3.27699 3.32918 3.35462 3.65946 3.75319 3.91829 4.02474 4.20157 4.23812 4.35098 4.42991 4.55959 4.67522 4.77814 4.81786 4.86566 4.97385 4.98183 5.01194 5.05422 5.11742 5.19609 5.21596 5.25951 5.33363 5.35915 5.48966 5.56892 5.76385 5.91644 5.93953 5.97721 6.07930 6.26779 6.76855 7.18607 7.53242 7.56541 7.61488 7.71343 8.07824 8.62525 9.19191 9.55359 10.07109 10.76996 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032720 B = 0.001648 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.535136 B =16987.607539 C =17195.982094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.598 5.598 3 C 0.081 3.919 4 C 0.094 3.906 5 H 0.108 0.892 6 O -0.547 6.547 7 C 0.030 3.970 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.104 0.896 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.516 3.484 22 O -0.510 6.510 23 C 0.071 3.929 24 F -0.177 7.177 25 C -0.165 4.165 26 C 0.045 3.955 27 O -0.364 6.364 28 C 0.037 3.963 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.373 0.627 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.357 0.643 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.110 -21.924 -18.983 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.330 5.330 3 C -0.042 4.042 4 C 0.034 3.966 5 H 0.126 0.874 6 O -0.352 6.352 7 C -0.101 4.101 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C 0.301 3.699 22 O -0.385 6.385 23 C 0.049 3.951 24 F -0.157 7.157 25 C -0.203 4.203 26 C -0.031 4.031 27 O -0.283 6.283 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.221 0.779 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.178 0.822 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.124 0.876 46 H 0.104 0.896 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.748 -22.097 -18.063 30.864 hybrid contribution 1.393 0.943 0.033 1.683 sum -10.355 -21.154 -18.030 29.661 Atomic orbital electron populations 1.22377 0.78744 1.05886 1.02442 1.47616 1.07380 1.05519 1.72535 1.22334 0.98628 0.84804 0.98405 1.22363 0.95095 0.87237 0.91941 0.87428 1.86639 1.29232 1.62735 1.56598 1.22570 0.99502 0.96579 0.91429 1.59975 1.54063 1.03814 1.11896 1.21684 0.97655 0.92023 0.96859 1.19807 0.84070 0.83779 0.89738 1.90538 1.55443 1.52850 1.47628 1.41870 1.53567 1.15902 1.08824 1.19768 1.37027 1.01940 0.84049 0.87854 1.25263 0.97106 0.95865 0.99782 1.69621 1.42237 1.10642 1.31907 0.85791 0.77881 0.78556 0.82071 1.19207 1.20784 1.20749 1.20176 0.88022 0.84733 0.76968 1.90695 1.13066 1.86389 1.48335 1.22503 0.88406 0.96414 0.87807 1.92832 1.64694 1.96959 1.61220 1.23706 1.00850 0.92838 1.02920 1.23695 0.99046 0.93736 0.86599 1.88952 1.78492 1.31344 1.29509 1.23769 0.98166 0.90397 0.91723 0.92255 0.90082 0.88739 0.89214 0.88985 0.77928 0.95177 0.90227 0.82238 0.93959 0.89680 0.77489 0.91955 0.86564 0.87939 0.91239 0.87564 0.89576 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.28 9.57 59.85 0.57 0.85 16 2 N -0.60 -5.04 2.86 -181.57 -0.52 -5.56 16 3 C 0.08 0.67 5.11 -4.04 -0.02 0.64 16 4 C 0.09 1.02 3.48 -26.73 -0.09 0.93 16 5 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 6 O -0.55 -7.24 11.54 -42.91 -0.50 -7.73 16 7 C 0.03 0.35 5.39 -3.82 -0.02 0.33 16 8 N -0.66 -11.03 6.12 -115.06 -0.70 -11.73 16 9 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 10 C 0.44 10.67 7.82 -10.98 -0.09 10.58 16 11 O -0.58 -16.31 15.78 5.55 0.09 -16.22 16 12 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 13 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 17 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.52 5.25 6.22 -10.98 -0.07 5.18 16 22 O -0.51 -6.48 13.98 -2.12 -0.03 -6.51 16 23 C 0.07 0.58 1.11 -90.24 -0.10 0.48 16 24 F -0.18 -1.55 14.18 2.25 0.03 -1.52 16 25 C -0.17 -1.24 6.38 -24.72 -0.16 -1.39 16 26 C 0.05 0.27 7.72 38.21 0.29 0.57 16 27 O -0.36 -2.99 11.52 -35.23 -0.41 -3.40 16 28 C 0.04 0.25 6.39 37.73 0.24 0.49 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 31 H 0.09 0.58 4.89 -51.93 -0.25 0.33 16 32 H 0.09 0.78 7.42 -51.93 -0.39 0.40 16 33 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.37 4.28 8.75 45.56 0.40 4.68 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.36 6.48 7.82 -39.29 -0.31 6.18 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.12 1.01 6.81 -51.93 -0.35 0.66 16 43 H 0.10 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.11 0.47 8.14 -51.92 -0.42 0.04 16 46 H 0.09 0.43 8.03 -51.93 -0.42 0.01 16 47 H 0.10 0.61 7.68 -51.93 -0.40 0.21 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -35.36 389.90 -6.42 -41.77 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -6.19 Total: 15.98 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 0.29 Total: 11.41 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.56 Total: -55.94 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.84 Total: -33.86 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.36 -6.42 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700947614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.381 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds