Wall clock time and date at job start Wed Apr 1 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 6 6 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 7 7 C 1.53003 * 109.47004 * 185.00070 * 4 3 2 8 8 N 1.46896 * 109.47241 * 179.97438 * 7 4 3 9 9 C 1.46896 * 110.99968 * 180.02562 * 8 7 4 10 10 C 1.50701 * 109.47124 * 179.97438 * 9 8 7 11 11 O 1.21292 * 119.99920 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00169 * 180.02562 * 10 9 8 13 13 C 1.37104 * 119.99951 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99840 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99895 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99994 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99946 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47305 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47161 * 120.00368 * 17 15 13 20 20 H 1.48498 * 109.46903 * 240.00093 * 17 15 13 21 21 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00410 * 179.97438 * 21 2 1 23 23 C 1.50703 * 119.99541 * 359.97438 * 21 2 1 24 24 F 1.39890 * 110.43749 * 308.90828 * 23 21 2 25 25 C 1.54812 * 110.48385 * 186.22223 * 23 21 2 26 26 C 1.54998 * 102.08983 * 220.44274 * 25 23 21 27 27 O 1.44383 * 103.49071 * 37.02734 * 26 25 23 28 28 C 1.43741 * 106.97398 * 319.93491 * 27 26 25 29 29 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 32 32 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 33 33 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 34 34 H 0.96703 * 114.00490 * 59.99746 * 6 4 3 35 35 H 1.09002 * 109.47349 * 300.00327 * 7 4 3 36 36 H 1.09000 * 109.46923 * 59.99778 * 7 4 3 37 37 H 1.00897 * 111.00194 * 56.04193 * 8 7 4 38 38 H 1.08999 * 109.47250 * 299.99972 * 9 8 7 39 39 H 1.09000 * 109.47585 * 60.00269 * 9 8 7 40 40 H 0.97001 * 119.99969 * 359.97438 * 12 10 9 41 41 H 0.97003 * 120.00236 * 179.97438 * 16 15 13 42 42 H 1.09001 * 110.90822 * 338.63582 * 25 23 21 43 43 H 1.08996 * 110.90827 * 102.24652 * 25 23 21 44 44 H 1.09000 * 110.61984 * 278.52014 * 26 25 23 45 45 H 1.09008 * 110.75220 * 155.58748 * 26 25 23 46 46 H 1.08998 * 109.88478 * 267.09405 * 28 27 26 47 47 H 1.09001 * 109.87586 * 145.93784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7549 1.9815 6 8 3.3210 0.7725 2.0813 7 6 3.1061 3.0938 1.4443 8 7 3.3505 3.5181 2.8292 9 6 3.9782 4.8455 2.8702 10 6 4.2123 5.2465 4.3038 11 8 3.8887 4.4996 5.2031 12 7 4.7815 6.4350 4.5869 13 6 4.9950 6.7995 5.8912 14 1 4.7075 6.1341 6.6918 15 6 5.5822 8.0246 6.1830 16 7 5.9324 8.8340 5.2088 17 14 5.8738 8.5209 7.9601 18 1 5.3946 7.4416 8.8605 19 1 7.3257 8.7408 8.1807 20 1 5.1334 9.7747 8.2516 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 9 0.4285 -2.4839 1.0199 25 6 2.3630 -3.6624 0.1560 26 6 1.7721 -4.7001 -0.8321 27 8 1.3106 -3.8903 -1.9348 28 6 0.7176 -2.7095 -1.3690 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 3.1499 1.1384 -0.5139 33 1 1.6084 2.0284 -0.5139 34 1 4.1838 0.6810 1.6541 35 1 4.0524 3.0493 0.9052 36 1 2.4437 3.8092 0.9570 37 1 3.9094 2.8381 3.3225 38 1 4.9307 4.8135 2.3412 39 1 3.3216 5.5729 2.3926 40 1 5.0407 7.0322 3.8677 41 1 6.3420 9.6894 5.4124 42 1 3.3732 -3.3771 -0.1376 43 1 2.3494 -4.0453 1.1764 44 1 0.9403 -5.2356 -0.3745 45 1 2.5405 -5.3984 -1.1641 46 1 -0.3540 -2.8595 -1.2373 47 1 0.8969 -1.8554 -2.0219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700947614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:38 Heat of formation + Delta-G solvation = -226.588491 kcal Electronic energy + Delta-G solvation = -30898.132209 eV Core-core repulsion = 26222.857496 eV Total energy + Delta-G solvation = -4675.274714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.33772 -41.36346 -40.22982 -39.82237 -38.72371 -36.65311 -36.15645 -35.55167 -33.29023 -32.96882 -31.77533 -30.40119 -28.88335 -27.74735 -26.69885 -25.19639 -24.27062 -23.16510 -22.49381 -21.11797 -20.73549 -19.93597 -18.76301 -18.32923 -18.09297 -17.80976 -17.37214 -17.22521 -16.77241 -16.67874 -16.38089 -16.22393 -16.13030 -15.97338 -15.67972 -15.44164 -15.21687 -14.88358 -14.85571 -14.36731 -14.21401 -14.01848 -13.88599 -13.51714 -13.47951 -13.21721 -13.08141 -12.98289 -12.81057 -12.75759 -12.62473 -12.56701 -12.42712 -12.12919 -12.09523 -11.93601 -11.53598 -11.37541 -11.07846 -10.75465 -10.37633 -10.03523 -9.70949 -9.34911 -8.48710 -5.97587 1.19136 1.35378 1.40751 1.55156 1.69463 2.02813 2.27989 2.64015 2.72530 2.86818 3.08526 3.18263 3.21173 3.43414 3.54759 3.67906 3.88257 3.89999 4.03999 4.08255 4.11040 4.26634 4.29686 4.36286 4.38762 4.46772 4.52551 4.53118 4.57734 4.65867 4.69134 4.70920 4.71513 4.90899 4.92520 5.07641 5.30746 5.39358 5.58304 5.86163 6.08336 6.11166 6.33752 6.58304 6.74629 6.83501 7.10837 7.53844 8.09814 8.68844 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032720 B = 0.001648 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.535136 B =16987.607539 C =17195.982094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.597 5.597 3 C 0.087 3.913 4 C 0.098 3.902 5 H 0.094 0.906 6 O -0.571 6.571 7 C 0.034 3.966 8 N -0.682 5.682 9 C 0.066 3.934 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.336 4.336 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.275 1.275 19 H -0.270 1.270 20 H -0.269 1.269 21 C 0.506 3.494 22 O -0.545 6.545 23 C 0.069 3.931 24 F -0.181 7.181 25 C -0.168 4.168 26 C 0.048 3.952 27 O -0.384 6.384 28 C 0.041 3.959 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.378 0.622 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.344 0.656 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 -21.581 -20.482 32.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.328 5.328 3 C -0.036 4.036 4 C 0.038 3.962 5 H 0.112 0.888 6 O -0.377 6.377 7 C -0.096 4.096 8 N -0.315 5.315 9 C -0.066 4.066 10 C 0.222 3.778 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.817 3.183 18 H -0.200 1.200 19 H -0.195 1.195 20 H -0.194 1.194 21 C 0.292 3.708 22 O -0.422 6.422 23 C 0.047 3.953 24 F -0.161 7.161 25 C -0.206 4.206 26 C -0.028 4.028 27 O -0.303 6.303 28 C -0.036 4.036 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.226 0.774 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.139 0.861 46 H 0.124 0.876 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.708 -21.730 -19.611 31.911 hybrid contribution 1.654 0.819 0.493 1.910 sum -11.054 -20.911 -19.118 30.414 Atomic orbital electron populations 1.22576 0.77030 1.06090 1.04255 1.47757 1.08507 1.05121 1.71424 1.22294 0.99276 0.85496 0.96522 1.22366 0.93948 0.86591 0.93330 0.88768 1.86607 1.29902 1.63497 1.57683 1.22670 1.00797 0.97323 0.88820 1.59985 1.53632 1.02920 1.14984 1.21552 0.99595 0.93284 0.92219 1.20955 0.82090 0.82535 0.92186 1.90503 1.56862 1.53930 1.49945 1.41929 1.54123 1.16721 1.08174 1.19704 1.39301 1.02691 0.84822 0.90520 1.26041 0.96077 0.95208 1.03888 1.69672 1.41868 1.10931 1.33516 0.84862 0.78306 0.78112 0.76988 1.19988 1.19508 1.19418 1.20580 0.87872 0.85800 0.76586 1.90672 1.14493 1.87002 1.50059 1.22538 0.88494 0.95633 0.88635 1.92824 1.64780 1.96948 1.61589 1.23705 1.00059 0.93286 1.03581 1.23824 0.99915 0.93279 0.85772 1.88924 1.78802 1.31991 1.30570 1.23838 0.98923 0.90273 0.90580 0.89596 0.89267 0.89198 0.89640 0.85764 0.77376 0.93604 0.87982 0.83714 0.91627 0.87277 0.76875 0.91237 0.88177 0.87664 0.89702 0.86143 0.87584 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 9.57 127.77 1.22 1.61 16 2 N -0.60 -9.19 2.86 -846.74 -2.42 -11.61 16 3 C 0.09 1.26 5.11 86.38 0.44 1.70 16 4 C 0.10 2.01 3.48 30.59 0.11 2.12 16 5 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 6 O -0.57 -15.25 11.54 -141.64 -1.63 -16.88 16 7 C 0.03 0.71 5.39 86.31 0.47 1.17 16 8 N -0.68 -22.06 6.12 -517.94 -3.17 -25.24 16 9 C 0.07 2.26 6.17 85.56 0.53 2.79 16 10 C 0.43 21.27 7.82 87.66 0.69 21.95 16 11 O -0.63 -36.20 15.78 -3.07 -0.05 -36.25 16 12 N -0.57 -29.87 5.29 -306.98 -1.62 -31.49 16 13 C -0.34 -19.45 9.68 84.04 0.81 -18.64 16 14 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 16 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 17 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 21 C 0.51 10.08 6.22 87.66 0.55 10.63 16 22 O -0.54 -14.09 13.98 4.32 0.06 -14.03 16 23 C 0.07 1.09 1.11 -10.55 -0.01 1.08 16 24 F -0.18 -3.04 14.18 44.97 0.64 -2.40 16 25 C -0.17 -2.50 6.38 31.90 0.20 -2.30 16 26 C 0.05 0.52 7.72 72.67 0.56 1.08 16 27 O -0.38 -5.80 11.52 -148.98 -1.72 -7.52 16 28 C 0.04 0.49 6.39 72.36 0.46 0.95 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 31 H 0.09 0.96 4.89 -2.38 -0.01 0.94 16 32 H 0.09 1.36 7.42 -2.39 -0.02 1.34 16 33 H 0.12 0.99 8.07 -2.38 -0.02 0.97 16 34 H 0.38 8.89 8.75 -74.06 -0.65 8.24 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.34 12.61 7.82 -89.70 -0.70 11.90 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 41 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.10 1.83 6.81 -2.39 -0.02 1.81 16 43 H 0.10 1.44 8.12 -2.39 -0.02 1.42 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.11 0.81 8.03 -2.39 -0.02 0.79 16 47 H 0.11 1.09 7.68 -2.39 -0.02 1.08 16 Total: -1.00 -78.18 389.90 -2.16 -80.35 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: -1.05 Total: 45.13 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 6.49 Total: 23.95 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -6.93 Total: -117.85 kcal Atomic # 8 Polarization: -71.33 SS G_CDS: -3.34 Total: -74.67 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.64 Total: -2.40 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -78.18 -2.16 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700947614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.241 kcal (2) G-P(sol) polarization free energy of solvation -78.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds