Wall clock time and date at job start Wed Apr 1 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99840 * 2 1 4 4 S 1.65598 * 119.99801 * 180.02562 * 2 1 3 5 5 O 1.42097 * 104.27564 * 333.92606 * 4 2 1 6 6 O 1.42104 * 104.27403 * 206.07144 * 4 2 1 7 7 C 1.81394 * 104.45036 * 89.99880 * 4 2 1 8 8 C 1.50698 * 109.47331 * 180.02562 * 7 4 2 9 9 O 1.21286 * 119.99603 * 359.97438 * 8 7 4 10 10 N 1.35387 * 120.00437 * 179.97438 * 8 7 4 11 11 C 1.45387 * 120.02789 * 0.02562 * 10 8 7 12 12 C 1.52201 * 114.72586 * 76.93227 * 11 10 8 13 13 C 1.52477 * 112.69049 * 19.26955 * 12 11 10 14 14 C 1.52662 * 110.95176 * 81.67025 * 13 12 11 15 15 C 1.51651 * 111.70620 * 303.85887 * 14 13 12 16 16 C 1.52601 * 112.15886 * 293.71339 * 15 14 13 17 17 H 1.10803 * 107.71174 * 226.01530 * 16 15 14 18 18 N 1.45911 * 112.36229 * 344.01784 * 16 15 14 19 19 C 1.36931 * 120.00251 * 209.21881 * 18 16 15 20 20 H 1.08005 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00305 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99639 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47402 * 90.00102 * 23 21 19 25 25 H 1.48509 * 109.46809 * 210.00048 * 23 21 19 26 26 H 1.48500 * 109.47412 * 329.99545 * 23 21 19 27 27 C 1.46830 * 119.40325 * 183.73267 * 10 8 7 28 28 H 1.08994 * 109.47545 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47339 * 300.00257 * 1 2 3 30 30 H 1.09006 * 109.47296 * 59.99769 * 1 2 3 31 31 H 1.09000 * 109.46675 * 269.99888 * 3 2 1 32 32 H 1.09000 * 109.47206 * 29.99931 * 3 2 1 33 33 H 1.08993 * 109.47091 * 150.00165 * 3 2 1 34 34 H 1.08994 * 109.47431 * 59.99748 * 7 4 2 35 35 H 1.09003 * 109.46932 * 299.99718 * 7 4 2 36 36 H 1.10309 * 107.93008 * 315.96147 * 11 10 8 37 37 H 1.09448 * 109.32936 * 200.73771 * 11 10 8 38 38 H 1.09892 * 109.21802 * 140.65435 * 12 11 10 39 39 H 1.09887 * 109.35934 * 257.63514 * 12 11 10 40 40 H 1.10532 * 108.05518 * 199.60745 * 13 12 11 41 41 H 1.08075 * 112.00950 * 316.87839 * 13 12 11 42 42 H 1.08994 * 110.01824 * 180.60460 * 14 13 12 43 43 H 1.09963 * 108.42427 * 63.58556 * 14 13 12 44 44 H 1.10123 * 108.50923 * 173.74213 * 15 14 13 45 45 H 1.09076 * 110.15938 * 56.93591 * 15 14 13 46 46 H 0.96997 * 120.00028 * 29.22034 * 18 16 15 47 47 H 0.97005 * 120.00171 * 179.97438 * 22 21 19 48 48 H 1.09544 * 109.26994 * 14.71694 * 27 10 8 49 49 H 1.09571 * 109.28492 * 132.94996 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3969 -2.3563 0.6042 6 8 3.5395 -1.1194 0.6048 7 6 2.5193 -1.8254 -1.7574 8 6 3.2693 -3.1258 -1.8899 9 8 3.6173 -3.7289 -0.8969 10 7 3.5546 -3.6207 -3.1173 11 6 3.1381 -2.8979 -4.3081 12 6 3.9948 -1.6872 -4.6501 13 6 5.3646 -1.7283 -3.9817 14 6 6.3305 -2.6092 -4.7701 15 6 5.7860 -4.0125 -4.9552 16 6 5.6785 -4.7672 -3.6333 17 1 6.0984 -5.7807 -3.7886 18 7 6.4508 -4.1352 -2.5688 19 6 6.9697 -4.8957 -1.5552 20 1 6.8070 -5.9634 -1.5434 21 6 7.7040 -4.2944 -0.5422 22 7 7.9011 -2.9931 -0.5558 23 14 8.4125 -5.3320 0.8401 24 1 9.7737 -5.7924 0.4659 25 1 8.4885 -4.5188 2.0804 26 1 7.5383 -6.5096 1.0732 27 6 4.2126 -4.9283 -3.2322 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.3791 1.5833 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 3.0865 -1.0279 -2.2371 35 1 1.5450 -1.9178 -2.2374 36 1 2.1002 -2.5580 -4.1534 37 1 3.1125 -3.5858 -5.1590 38 1 4.1283 -1.6347 -5.7396 39 1 3.4704 -0.7716 -4.3431 40 1 5.7735 -0.7014 -3.9751 41 1 5.3027 -2.0450 -2.9502 42 1 7.3005 -2.6364 -4.2738 43 1 6.4833 -2.1573 -5.7608 44 1 6.4659 -4.5662 -5.6215 45 1 4.8145 -3.9765 -5.4498 46 1 6.5967 -3.1763 -2.5791 47 1 8.4139 -2.5728 0.1523 48 1 4.1504 -5.4500 -2.2710 49 1 3.6906 -5.5313 -3.9835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707249607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:26 Heat of formation + Delta-G solvation = -71.915977 kcal Electronic energy + Delta-G solvation = -32019.605123 eV Core-core repulsion = 27917.250689 eV Total energy + Delta-G solvation = -4102.354434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.06370 -37.54328 -36.96063 -36.30445 -35.60944 -34.80135 -33.68046 -32.15911 -30.24663 -29.21787 -28.24784 -27.55112 -26.40040 -24.76242 -23.70685 -22.76709 -20.63683 -19.83639 -18.79647 -18.30055 -17.68645 -17.29634 -16.64615 -16.42769 -16.27878 -15.64956 -15.38127 -14.93443 -14.58761 -14.51843 -14.40825 -14.06473 -13.70891 -13.44198 -13.23022 -13.03278 -12.89533 -12.73698 -12.48570 -12.46337 -12.20995 -11.82648 -11.77221 -11.57866 -11.53807 -11.52041 -11.45562 -11.02738 -10.93840 -10.77569 -10.67541 -10.66000 -10.29109 -10.04559 -9.89452 -9.74597 -9.47923 -9.44806 -9.22393 -8.91979 -8.22196 -6.73751 -5.58078 -2.84747 0.24919 2.71707 2.85392 3.26754 3.57676 3.64919 3.66481 4.00139 4.22760 4.34073 4.66921 4.73563 4.77449 4.85531 5.10930 5.15474 5.16274 5.18097 5.23904 5.30847 5.39130 5.51620 5.54736 5.55578 5.57106 5.68485 5.72094 5.77297 5.77418 5.83580 5.94041 6.06116 6.19323 6.23820 6.36490 6.36717 6.43333 6.51085 6.61522 6.82916 6.91994 6.94677 7.07831 7.65614 7.88680 8.44450 8.61505 9.73268 10.29694 10.62217 11.65105 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.005255 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.080643 B = 5326.514962 C = 6854.341941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.013 6.013 3 C 0.080 3.920 4 S 2.637 3.363 5 O -0.943 6.943 6 O -0.922 6.922 7 C -0.671 4.671 8 C 0.539 3.461 9 O -0.503 6.503 10 N -0.581 5.581 11 C 0.113 3.887 12 C -0.133 4.133 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.162 3.838 17 H 0.051 0.949 18 N -0.709 5.709 19 C -0.236 4.236 20 H 0.067 0.933 21 C -0.006 4.006 22 N -0.928 5.928 23 Si 0.902 3.098 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.088 3.912 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.387 0.613 47 H 0.254 0.746 48 H 0.092 0.908 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.529 9.026 -10.695 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.852 5.852 3 C -0.065 4.065 4 S 2.725 3.275 5 O -0.933 6.933 6 O -0.911 6.911 7 C -0.799 4.799 8 C 0.324 3.676 9 O -0.377 6.377 10 N -0.314 5.314 11 C -0.012 4.012 12 C -0.171 4.171 13 C -0.162 4.162 14 C -0.144 4.144 15 C -0.158 4.158 16 C 0.050 3.950 17 H 0.068 0.932 18 N -0.351 5.351 19 C -0.367 4.367 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.734 3.266 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.037 4.037 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.225 0.775 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.972 8.121 -9.310 20.193 hybrid contribution 0.200 0.220 -0.209 0.363 sum -15.772 8.341 -9.519 20.222 Atomic orbital electron populations 1.21565 0.78653 1.03803 1.02107 1.57631 1.15234 1.22307 1.90063 1.21620 0.97881 0.85009 1.02033 1.04550 0.74034 0.72645 0.76262 1.93553 1.65237 1.62229 1.72309 1.93643 1.43368 1.82323 1.71793 1.31162 1.10211 1.06865 1.31638 1.19050 0.79601 0.84387 0.84609 1.90933 1.51447 1.59665 1.35698 1.47318 1.58242 1.21651 1.04184 1.21269 0.96736 0.94720 0.88438 1.21928 0.96923 0.97102 1.01180 1.21486 0.93514 0.99628 1.01560 1.21115 0.99843 0.94638 0.98838 1.21679 1.00237 0.96189 0.97672 1.20481 0.89737 0.96230 0.88575 0.93165 1.42424 1.60262 1.08001 1.24426 1.19134 1.25596 0.91093 1.00897 0.91501 1.24645 1.01260 0.95611 0.98700 1.69619 1.45041 1.08229 1.34721 0.86257 0.78554 0.79325 0.82449 1.22089 1.21807 1.20807 1.22877 0.95766 0.82028 1.03047 0.89649 0.91701 0.92300 0.92742 0.90669 0.89327 0.82741 0.83189 0.92560 0.90116 0.91261 0.92537 0.93207 0.89492 0.90518 0.93911 0.93239 0.92473 0.77510 0.93640 0.88961 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.62 59.85 0.64 1.34 16 2 N -1.01 -11.49 3.52 -129.20 -0.45 -11.95 16 3 C 0.08 0.75 10.68 59.85 0.64 1.39 16 4 S 2.64 43.73 4.55 -107.50 -0.49 43.24 16 5 O -0.94 -17.98 16.57 -57.55 -0.95 -18.93 16 6 O -0.92 -19.86 16.57 -57.55 -0.95 -20.81 16 7 C -0.67 -9.20 5.34 36.00 0.19 -9.00 16 8 C 0.54 10.22 6.55 -10.71 -0.07 10.15 16 9 O -0.50 -12.39 15.23 5.55 0.08 -12.31 16 10 N -0.58 -9.41 1.73 -173.45 -0.30 -9.71 16 11 C 0.11 1.28 4.37 -5.05 -0.02 1.26 16 12 C -0.13 -1.48 4.71 -27.41 -0.13 -1.61 16 13 C -0.12 -1.94 4.80 -27.17 -0.13 -2.07 16 14 C -0.11 -1.71 4.75 -27.59 -0.13 -1.84 16 15 C -0.12 -1.84 5.05 -27.62 -0.14 -1.98 16 16 C 0.16 3.14 2.70 -68.54 -0.18 2.96 16 17 H 0.05 1.00 8.11 -50.89 -0.41 0.58 16 18 N -0.71 -17.72 4.57 -53.42 -0.24 -17.97 16 19 C -0.24 -6.80 9.87 -15.06 -0.15 -6.95 16 20 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.93 -29.43 13.06 55.49 0.72 -28.70 16 23 Si 0.90 24.22 29.55 -169.99 -5.02 19.20 16 24 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 26 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 27 C 0.09 1.56 5.37 -3.95 -0.02 1.54 16 28 H 0.08 0.75 6.87 -51.93 -0.36 0.39 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.09 1.02 6.91 -51.93 -0.36 0.66 16 34 H 0.15 1.78 6.77 -51.93 -0.35 1.43 16 35 H 0.15 1.35 7.44 -51.92 -0.39 0.96 16 36 H 0.06 0.50 7.05 -51.18 -0.36 0.14 16 37 H 0.08 0.78 6.53 -51.68 -0.34 0.44 16 38 H 0.07 0.65 8.07 -51.42 -0.42 0.24 16 39 H 0.06 0.52 7.55 -51.42 -0.39 0.13 16 40 H 0.05 0.74 8.27 -51.05 -0.42 0.32 16 41 H 0.09 1.75 4.41 -52.45 -0.23 1.51 16 42 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 43 H 0.04 0.58 8.22 -51.38 -0.42 0.15 16 44 H 0.05 0.73 8.24 -51.29 -0.42 0.30 16 45 H 0.06 0.72 4.84 -51.89 -0.25 0.47 16 46 H 0.39 10.14 3.94 -40.82 -0.16 9.98 16 47 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 48 H 0.09 1.97 7.06 -51.62 -0.36 1.60 16 49 H 0.05 0.77 8.14 -51.61 -0.42 0.35 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -40.22 381.14 -9.14 -49.35 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.67 Total: 7.95 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 0.39 Total: -5.09 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.27 Total: -68.33 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -1.82 Total: -52.06 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.02 Total: 19.20 kcal Atomic # 16 Polarization: 43.73 SS G_CDS: -0.49 Total: 43.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -40.22 -9.14 -49.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707249607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.565 kcal (2) G-P(sol) polarization free energy of solvation -40.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds