Wall clock time and date at job start Wed Apr 1 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99840 * 2 1 4 4 S 1.65598 * 119.99801 * 180.02562 * 2 1 3 5 5 O 1.42097 * 104.27564 * 333.92606 * 4 2 1 6 6 O 1.42104 * 104.27403 * 206.07144 * 4 2 1 7 7 C 1.81394 * 104.45036 * 89.99880 * 4 2 1 8 8 C 1.50698 * 109.47331 * 180.02562 * 7 4 2 9 9 O 1.21286 * 119.99603 * 359.97438 * 8 7 4 10 10 N 1.35387 * 120.00437 * 179.97438 * 8 7 4 11 11 C 1.45387 * 120.02789 * 0.02562 * 10 8 7 12 12 C 1.52201 * 114.72586 * 76.93227 * 11 10 8 13 13 C 1.52477 * 112.69049 * 19.26955 * 12 11 10 14 14 C 1.52662 * 110.95176 * 81.67025 * 13 12 11 15 15 C 1.51651 * 111.70620 * 303.85887 * 14 13 12 16 16 C 1.52601 * 112.15886 * 293.71339 * 15 14 13 17 17 H 1.10803 * 107.71174 * 226.01530 * 16 15 14 18 18 N 1.45911 * 112.36229 * 344.01784 * 16 15 14 19 19 C 1.36931 * 120.00251 * 209.21881 * 18 16 15 20 20 H 1.08005 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00305 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99639 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47402 * 90.00102 * 23 21 19 25 25 H 1.48509 * 109.46809 * 210.00048 * 23 21 19 26 26 H 1.48500 * 109.47412 * 329.99545 * 23 21 19 27 27 C 1.46830 * 119.40325 * 183.73267 * 10 8 7 28 28 H 1.08994 * 109.47545 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47339 * 300.00257 * 1 2 3 30 30 H 1.09006 * 109.47296 * 59.99769 * 1 2 3 31 31 H 1.09000 * 109.46675 * 269.99888 * 3 2 1 32 32 H 1.09000 * 109.47206 * 29.99931 * 3 2 1 33 33 H 1.08993 * 109.47091 * 150.00165 * 3 2 1 34 34 H 1.08994 * 109.47431 * 59.99748 * 7 4 2 35 35 H 1.09003 * 109.46932 * 299.99718 * 7 4 2 36 36 H 1.10309 * 107.93008 * 315.96147 * 11 10 8 37 37 H 1.09448 * 109.32936 * 200.73771 * 11 10 8 38 38 H 1.09892 * 109.21802 * 140.65435 * 12 11 10 39 39 H 1.09887 * 109.35934 * 257.63514 * 12 11 10 40 40 H 1.10532 * 108.05518 * 199.60745 * 13 12 11 41 41 H 1.08075 * 112.00950 * 316.87839 * 13 12 11 42 42 H 1.08994 * 110.01824 * 180.60460 * 14 13 12 43 43 H 1.09963 * 108.42427 * 63.58556 * 14 13 12 44 44 H 1.10123 * 108.50923 * 173.74213 * 15 14 13 45 45 H 1.09076 * 110.15938 * 56.93591 * 15 14 13 46 46 H 0.96997 * 120.00028 * 29.22034 * 18 16 15 47 47 H 0.97005 * 120.00171 * 179.97438 * 22 21 19 48 48 H 1.09544 * 109.26994 * 14.71694 * 27 10 8 49 49 H 1.09571 * 109.28492 * 132.94996 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3969 -2.3563 0.6042 6 8 3.5395 -1.1194 0.6048 7 6 2.5193 -1.8254 -1.7574 8 6 3.2693 -3.1258 -1.8899 9 8 3.6173 -3.7289 -0.8969 10 7 3.5546 -3.6207 -3.1173 11 6 3.1381 -2.8979 -4.3081 12 6 3.9948 -1.6872 -4.6501 13 6 5.3646 -1.7283 -3.9817 14 6 6.3305 -2.6092 -4.7701 15 6 5.7860 -4.0125 -4.9552 16 6 5.6785 -4.7672 -3.6333 17 1 6.0984 -5.7807 -3.7886 18 7 6.4508 -4.1352 -2.5688 19 6 6.9697 -4.8957 -1.5552 20 1 6.8070 -5.9634 -1.5434 21 6 7.7040 -4.2944 -0.5422 22 7 7.9011 -2.9931 -0.5558 23 14 8.4125 -5.3320 0.8401 24 1 9.7737 -5.7924 0.4659 25 1 8.4885 -4.5188 2.0804 26 1 7.5383 -6.5096 1.0732 27 6 4.2126 -4.9283 -3.2322 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.3791 1.5833 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 3.0865 -1.0279 -2.2371 35 1 1.5450 -1.9178 -2.2374 36 1 2.1002 -2.5580 -4.1534 37 1 3.1125 -3.5858 -5.1590 38 1 4.1283 -1.6347 -5.7396 39 1 3.4704 -0.7716 -4.3431 40 1 5.7735 -0.7014 -3.9751 41 1 5.3027 -2.0450 -2.9502 42 1 7.3005 -2.6364 -4.2738 43 1 6.4833 -2.1573 -5.7608 44 1 6.4659 -4.5662 -5.6215 45 1 4.8145 -3.9765 -5.4498 46 1 6.5967 -3.1763 -2.5791 47 1 8.4139 -2.5728 0.1523 48 1 4.1504 -5.4500 -2.2710 49 1 3.6906 -5.5313 -3.9835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707249607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:25 Heat of formation + Delta-G solvation = -104.850922 kcal Electronic energy + Delta-G solvation = -32021.033289 eV Core-core repulsion = 27917.250689 eV Total energy + Delta-G solvation = -4103.782600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.39531 -38.98259 -38.34858 -37.28761 -36.86384 -36.36597 -35.02202 -34.02053 -31.63402 -30.87261 -28.93806 -28.83358 -27.64472 -25.82725 -25.56222 -24.04394 -21.90700 -21.13866 -20.02410 -19.62472 -19.35079 -18.84151 -17.92237 -17.61393 -17.47117 -16.89404 -16.72239 -16.26951 -16.21391 -15.82983 -15.40410 -15.36472 -15.30095 -14.89263 -14.46913 -14.44207 -13.97924 -13.91859 -13.62628 -13.55284 -13.26589 -13.21528 -13.19924 -13.05393 -12.86578 -12.70300 -12.56950 -12.56006 -12.53398 -12.36009 -12.13600 -12.10264 -11.92523 -11.77793 -11.38304 -11.25702 -11.06006 -11.01565 -10.68292 -10.03689 -9.69930 -8.76910 -7.90000 -5.11730 -0.96451 1.36889 1.42918 1.48454 1.49710 1.64764 2.05892 2.57115 2.80848 3.06209 3.24163 3.45360 3.82526 3.85794 3.92352 4.01454 4.03984 4.14671 4.19179 4.22596 4.35164 4.43044 4.50888 4.58458 4.59802 4.66137 4.79233 4.81138 4.87704 4.96659 4.96932 4.99450 5.02373 5.03856 5.09586 5.15868 5.21904 5.31121 5.50265 5.52758 5.58555 5.60154 5.70637 5.78560 6.33699 6.39584 7.12915 7.42419 8.27067 8.44905 9.34063 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.005255 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.080643 B = 5326.514962 C = 6854.341941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.002 6.002 3 C 0.071 3.929 4 S 2.629 3.371 5 O -0.984 6.984 6 O -0.992 6.992 7 C -0.648 4.648 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.573 5.573 11 C 0.092 3.908 12 C -0.129 4.129 13 C -0.126 4.126 14 C -0.106 4.106 15 C -0.110 4.110 16 C 0.150 3.850 17 H 0.040 0.960 18 N -0.720 5.720 19 C -0.223 4.223 20 H 0.066 0.934 21 C -0.076 4.076 22 N -0.964 5.964 23 Si 0.955 3.045 24 H -0.279 1.279 25 H -0.304 1.304 26 H -0.278 1.278 27 C 0.091 3.909 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.182 0.818 35 H 0.209 0.791 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.024 0.976 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.101 0.899 46 H 0.381 0.619 47 H 0.244 0.756 48 H 0.043 0.957 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.846 10.352 -15.189 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.844 5.844 3 C -0.074 4.074 4 S 2.722 3.278 5 O -0.974 6.974 6 O -0.982 6.982 7 C -0.779 4.779 8 C 0.308 3.692 9 O -0.460 6.460 10 N -0.304 5.304 11 C -0.030 4.030 12 C -0.167 4.167 13 C -0.164 4.164 14 C -0.144 4.144 15 C -0.148 4.148 16 C 0.040 3.960 17 H 0.058 0.942 18 N -0.362 5.362 19 C -0.355 4.355 20 H 0.084 0.916 21 C -0.268 4.268 22 N -0.615 5.615 23 Si 0.785 3.215 24 H -0.206 1.206 25 H -0.231 1.231 26 H -0.204 1.204 27 C -0.034 4.034 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.200 0.800 35 H 0.226 0.774 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.119 0.881 46 H 0.217 0.783 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.332 9.428 -13.864 25.590 hybrid contribution 1.137 -0.190 1.030 1.545 sum -18.196 9.237 -12.834 24.107 Atomic orbital electron populations 1.21909 0.76251 1.04151 1.04718 1.57199 1.16364 1.20785 1.90066 1.21867 0.96884 0.84464 1.04150 1.04156 0.72717 0.73306 0.77618 1.93488 1.65515 1.64090 1.74297 1.93562 1.46578 1.83483 1.74583 1.30935 1.12923 1.04739 1.29257 1.19890 0.79346 0.85463 0.84534 1.90907 1.54640 1.62107 1.38331 1.47412 1.56696 1.21129 1.05116 1.21807 0.98819 0.95267 0.87107 1.21943 0.93750 0.98286 1.02719 1.21452 0.96746 0.99020 0.99222 1.21074 0.97618 0.95653 1.00016 1.21613 1.02926 0.95147 0.95130 1.20852 0.89957 0.96051 0.89125 0.94194 1.42580 1.61038 1.07628 1.24910 1.19481 1.23441 0.91373 1.01245 0.91645 1.25347 1.03377 0.96672 1.01405 1.69773 1.46937 1.09600 1.35240 0.85399 0.78595 0.77871 0.79593 1.20552 1.23132 1.20354 1.22608 0.95292 0.83578 1.01926 0.90437 0.90728 0.88071 0.89517 0.87798 0.92500 0.80031 0.77422 0.88297 0.87108 0.87892 0.89719 0.93379 0.94451 0.95704 0.90388 0.92315 0.88081 0.78304 0.94720 0.93799 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.62 127.77 1.36 2.35 16 2 N -1.00 -21.04 3.52 -562.68 -1.98 -23.02 16 3 C 0.07 1.21 10.68 127.77 1.37 2.57 16 4 S 2.63 89.16 4.55 -56.49 -0.26 88.90 16 5 O -0.98 -39.12 16.57 -127.64 -2.11 -41.24 16 6 O -0.99 -46.30 16.57 -127.64 -2.12 -48.42 16 7 C -0.65 -16.18 5.34 71.24 0.38 -15.80 16 8 C 0.52 19.55 6.55 87.56 0.57 20.13 16 9 O -0.58 -30.30 15.23 -3.05 -0.05 -30.35 16 10 N -0.57 -17.07 1.73 -820.71 -1.42 -18.49 16 11 C 0.09 1.50 4.37 86.32 0.38 1.88 16 12 C -0.13 -2.08 4.71 30.16 0.14 -1.94 16 13 C -0.13 -3.69 4.80 30.31 0.15 -3.54 16 14 C -0.11 -3.20 4.75 30.04 0.14 -3.06 16 15 C -0.11 -3.06 5.05 30.02 0.15 -2.91 16 16 C 0.15 5.77 2.70 44.91 0.12 5.89 16 17 H 0.04 1.59 8.11 -1.41 -0.01 1.58 16 18 N -0.72 -37.51 4.57 -322.94 -1.47 -38.99 16 19 C -0.22 -13.49 9.87 84.04 0.83 -12.66 16 20 H 0.07 3.87 7.82 -2.91 -0.02 3.84 16 21 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 22 N -0.96 -65.09 13.06 21.65 0.28 -64.81 16 23 Si 0.95 52.46 29.55 68.60 2.03 54.48 16 24 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.30 -17.17 7.11 99.48 0.71 -16.46 16 26 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 27 C 0.09 3.13 5.37 86.26 0.46 3.59 16 28 H 0.08 1.20 6.87 -2.39 -0.02 1.18 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.06 1.36 6.91 -2.39 -0.02 1.34 16 34 H 0.18 3.54 6.77 -2.39 -0.02 3.52 16 35 H 0.21 2.56 7.44 -2.39 -0.02 2.54 16 36 H 0.10 0.91 7.05 -1.68 -0.01 0.90 16 37 H 0.11 1.22 6.53 -2.15 -0.01 1.20 16 38 H 0.10 1.10 8.07 -1.91 -0.02 1.08 16 39 H 0.08 0.95 7.55 -1.91 -0.01 0.93 16 40 H 0.05 1.37 8.27 -1.56 -0.01 1.35 16 41 H 0.04 1.50 4.41 -2.87 -0.01 1.49 16 42 H 0.02 0.99 7.12 -2.39 -0.02 0.97 16 43 H 0.08 1.81 8.22 -1.87 -0.02 1.80 16 44 H 0.06 1.53 8.24 -1.79 -0.01 1.52 16 45 H 0.10 1.93 4.84 -2.35 -0.01 1.92 16 46 H 0.38 21.01 3.94 -92.71 -0.36 20.64 16 47 H 0.24 16.24 8.31 -92.70 -0.77 15.47 16 48 H 0.04 1.94 7.06 -2.10 -0.01 1.92 16 49 H 0.11 2.55 8.14 -2.08 -0.02 2.53 16 Total: -1.00 -102.99 381.14 0.06 -102.94 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.63 Total: 26.86 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 6.52 Total: -7.89 kcal Atomic # 7 Polarization: -140.71 SS G_CDS: -4.59 Total: -145.30 kcal Atomic # 8 Polarization: -115.72 SS G_CDS: -4.28 Total: -120.00 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 2.03 Total: 54.48 kcal Atomic # 16 Polarization: 89.16 SS G_CDS: -0.26 Total: 88.90 kcal Total: -102.99 0.06 -102.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707249607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.912 kcal (2) G-P(sol) polarization free energy of solvation -102.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds