Wall clock time and date at job start Wed Apr 1 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 120.00061 * 2 1 4 4 C 1.50701 * 109.47591 * 85.00212 * 3 2 1 5 5 O 1.21284 * 119.99429 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00760 * 180.27536 * 4 3 2 7 7 C 1.46497 * 120.00612 * 179.71691 * 6 4 3 8 8 C 1.52999 * 109.47304 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47019 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46870 * 185.08622 * 9 8 7 11 11 H 1.08994 * 109.87660 * 55.66096 * 10 9 8 12 12 C 1.54323 * 109.88198 * 294.64215 * 10 9 8 13 13 C 1.55151 * 102.94587 * 218.39243 * 12 10 9 14 14 C 1.54910 * 101.57943 * 35.50161 * 13 12 10 15 15 N 1.47020 * 109.88182 * 176.67924 * 10 9 8 16 16 C 1.36942 * 125.64969 * 298.31498 * 15 10 9 17 17 H 1.08003 * 119.99556 * 346.80336 * 16 15 10 18 18 C 1.38808 * 120.00368 * 166.81260 * 16 15 10 19 19 N 1.31620 * 119.99939 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47435 * 59.99819 * 20 18 16 22 22 H 1.48498 * 109.47463 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46953 * 299.99771 * 20 18 16 24 24 S 1.65601 * 119.99823 * 179.97438 * 2 1 3 25 25 C 1.81408 * 104.45027 * 270.00083 * 24 2 1 26 26 O 1.42103 * 104.27824 * 26.07281 * 24 2 1 27 27 O 1.42099 * 104.27965 * 153.93218 * 24 2 1 28 28 H 1.08997 * 109.46745 * 89.99991 * 1 2 3 29 29 H 1.09003 * 109.46907 * 210.00264 * 1 2 3 30 30 H 1.09001 * 109.46839 * 330.00197 * 1 2 3 31 31 H 1.09002 * 109.47452 * 324.99597 * 3 2 1 32 32 H 1.09010 * 109.47244 * 204.99849 * 3 2 1 33 33 H 0.97003 * 119.99332 * 359.72318 * 6 4 3 34 34 H 1.08994 * 109.47195 * 300.00290 * 7 6 4 35 35 H 1.09002 * 109.46772 * 60.00437 * 7 6 4 36 36 H 1.09003 * 109.47036 * 299.99987 * 8 7 6 37 37 H 1.08994 * 109.47001 * 60.00181 * 8 7 6 38 38 H 1.09001 * 109.47020 * 305.08111 * 9 8 7 39 39 H 1.08993 * 109.47417 * 65.08601 * 9 8 7 40 40 H 1.09002 * 110.72099 * 336.75999 * 12 10 9 41 41 H 1.09003 * 110.71900 * 100.02825 * 12 10 9 42 42 H 1.09000 * 111.00894 * 153.57668 * 13 12 10 43 43 H 1.09001 * 111.00736 * 277.39252 * 13 12 10 44 44 H 1.09003 * 110.36105 * 81.83594 * 14 13 12 45 45 H 1.09002 * 110.36412 * 204.15196 * 14 13 12 46 46 H 0.97000 * 120.00188 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.47065 * 60.00041 * 25 24 2 48 48 H 1.09001 * 109.47021 * 179.97438 * 25 24 2 49 49 H 1.09001 * 109.46981 * 299.99975 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7657 1.4154 5 8 1.8775 1.1235 2.3337 6 7 2.9806 2.9267 1.6603 7 6 3.1152 3.4129 3.0356 8 6 3.8749 4.7410 3.0351 9 6 4.0160 5.2484 4.4716 10 6 4.6623 6.6352 4.4614 11 1 4.0827 7.3095 3.8310 12 6 6.1088 6.5361 3.9329 13 6 6.8756 7.5454 4.8277 14 6 6.1493 7.3719 6.1850 15 7 4.7299 7.1654 5.8310 16 6 3.6562 7.4236 6.6408 17 1 2.6593 7.4435 6.2257 18 6 3.8490 7.6599 7.9949 19 7 5.0639 7.6353 8.5007 20 14 2.3845 8.0128 9.0993 21 1 1.4500 6.8592 9.0660 22 1 2.8547 8.2283 10.4913 23 1 1.6843 9.2310 8.6187 24 16 2.2930 -1.4342 0.0006 25 6 2.5193 -1.8254 1.7575 26 8 1.3969 -2.3564 -0.6042 27 8 3.5395 -1.1195 -0.6046 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0042 -0.5895 32 1 3.1859 1.1176 -0.4343 33 1 3.3514 3.4404 0.9258 34 1 2.1253 3.5611 3.4671 35 1 3.6638 2.6804 3.6279 36 1 4.8648 4.5931 2.6035 37 1 3.3260 5.4732 2.4430 38 1 3.0306 5.3102 4.9335 39 1 4.6413 4.5603 5.0402 40 1 6.5000 5.5276 4.0666 41 1 6.1581 6.8344 2.8857 42 1 7.9279 7.2736 4.9102 43 1 6.7653 8.5628 4.4523 44 1 6.5395 6.5034 6.7156 45 1 6.2606 8.2702 6.7923 46 1 5.1987 7.8009 9.4470 47 1 1.5451 -1.9178 2.2376 48 1 3.0618 -2.7660 1.8533 49 1 3.0866 -1.0278 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713432901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:15 Heat of formation + Delta-G solvation = -84.652999 kcal Electronic energy + Delta-G solvation = -28714.333432 eV Core-core repulsion = 24611.426679 eV Total energy + Delta-G solvation = -4102.906753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.04768 -37.89033 -37.52837 -36.54562 -36.22425 -35.41205 -33.05166 -32.21619 -29.78081 -29.66574 -29.24891 -27.80518 -25.70489 -24.71349 -23.81872 -21.61065 -20.91185 -20.14148 -19.29421 -19.15885 -18.18225 -17.62343 -16.95510 -16.72884 -16.44726 -15.90145 -15.77044 -15.15216 -14.85245 -14.59323 -14.46242 -14.20211 -13.82155 -13.73800 -13.50075 -13.34892 -13.14463 -12.96048 -12.71117 -12.46841 -12.35750 -12.08396 -12.02151 -11.96777 -11.91835 -11.70035 -11.48699 -11.40434 -11.06022 -10.83493 -10.77771 -10.59656 -10.50370 -10.12263 -10.01053 -9.79295 -9.65220 -9.62473 -9.36619 -9.24819 -8.58349 -6.78396 -5.73767 -3.08786 -0.10861 2.08671 2.30666 2.96546 3.39014 3.43809 3.44587 3.47805 3.76656 4.13358 4.43887 4.48677 4.57061 4.66985 4.82959 4.87975 4.95906 5.11933 5.18013 5.32900 5.37698 5.43329 5.46344 5.53146 5.57476 5.58677 5.69805 5.82745 5.90874 5.91932 5.98255 6.06933 6.23113 6.30130 6.33094 6.40410 6.55508 6.68060 6.71359 6.93089 7.15256 7.24380 7.55312 7.61928 7.80535 7.92406 8.29601 9.20385 9.82354 10.51669 11.38289 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.001926 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.499320 B =14537.626336 C =15364.125693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.984 5.984 3 C 0.095 3.905 4 C 0.483 3.517 5 O -0.536 6.536 6 N -0.724 5.724 7 C 0.117 3.883 8 C -0.128 4.128 9 C -0.122 4.122 10 C 0.162 3.838 11 H 0.030 0.970 12 C -0.124 4.124 13 C -0.150 4.150 14 C 0.171 3.829 15 N -0.597 5.597 16 C -0.226 4.226 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 S 2.611 3.389 25 C -0.660 4.660 26 O -0.955 6.955 27 O -0.959 6.959 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.022 0.978 45 H 0.072 0.928 46 H 0.253 0.747 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -13.803 -19.303 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.819 5.819 3 C -0.035 4.035 4 C 0.267 3.733 5 O -0.413 6.413 6 N -0.376 5.376 7 C -0.006 4.006 8 C -0.166 4.166 9 C -0.162 4.162 10 C 0.055 3.945 11 H 0.048 0.952 12 C -0.162 4.162 13 C -0.189 4.189 14 C 0.047 3.953 15 N -0.321 5.321 16 C -0.355 4.355 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 S 2.705 3.295 25 C -0.811 4.811 26 O -0.945 6.945 27 O -0.949 6.949 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.220 -14.674 -19.137 24.482 hybrid contribution -0.706 0.610 1.231 1.544 sum -4.927 -14.065 -17.906 23.296 Atomic orbital electron populations 1.21470 0.77482 1.03553 1.02119 1.57100 1.15563 1.19958 1.89320 1.21301 1.00327 0.87496 0.94366 1.21400 0.78293 0.81457 0.92142 1.90709 1.47697 1.56706 1.46156 1.46125 1.57757 1.23276 1.10480 1.21539 1.01220 0.96192 0.81628 1.21844 0.99891 0.94865 1.00032 1.22028 1.02215 0.98902 0.93061 1.20917 0.93413 0.91835 0.88376 0.95205 1.22588 0.96424 0.99199 0.97992 1.23009 0.98248 0.98193 0.99466 1.21485 0.82625 1.00452 0.90786 1.44611 1.02607 1.73794 1.11083 1.18913 0.86561 1.41388 0.88602 0.90856 1.24873 0.96648 1.02149 0.96598 1.69923 1.18928 1.55284 1.12446 0.86251 0.81760 0.78114 0.79947 1.21135 1.21631 1.21177 1.04913 0.73735 0.73091 0.77790 1.30450 1.12263 1.11785 1.26613 1.93611 1.64655 1.62142 1.74120 1.93589 1.44048 1.82976 1.74292 0.92021 0.90905 0.90825 0.86669 0.85686 0.76386 0.91311 0.91424 0.91593 0.91686 0.91751 0.92235 0.92064 0.92627 0.92557 0.92484 0.95951 0.91007 0.93684 0.85170 0.85840 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 10.20 59.85 0.61 1.24 16 2 N -0.98 -7.45 2.61 -123.05 -0.32 -7.77 16 3 C 0.09 0.61 6.12 -5.20 -0.03 0.58 16 4 C 0.48 4.50 7.89 -10.99 -0.09 4.41 16 5 O -0.54 -6.74 15.01 5.55 0.08 -6.65 16 6 N -0.72 -6.15 5.56 -60.30 -0.33 -6.48 16 7 C 0.12 1.33 5.67 -4.04 -0.02 1.30 16 8 C -0.13 -1.49 5.07 -26.73 -0.14 -1.63 16 9 C -0.12 -2.04 4.69 -26.73 -0.13 -2.16 16 10 C 0.16 3.11 3.18 -66.95 -0.21 2.90 16 11 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 12 C -0.12 -2.03 5.61 -24.90 -0.14 -2.17 16 13 C -0.15 -2.76 7.09 -24.58 -0.17 -2.94 16 14 C 0.17 4.08 5.46 -2.35 -0.01 4.07 16 15 N -0.60 -14.67 3.14 -162.32 -0.51 -15.18 16 16 C -0.23 -6.12 9.75 -15.06 -0.15 -6.27 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 19 N -0.92 -26.69 10.54 55.49 0.59 -26.11 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 S 2.61 22.60 6.02 -107.50 -0.65 21.95 16 25 C -0.66 -4.82 10.52 101.05 1.06 -3.75 16 26 O -0.95 -10.69 17.09 -57.54 -0.98 -11.67 16 27 O -0.96 -10.61 16.53 -57.54 -0.95 -11.56 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 30 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.12 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.13 0.70 6.82 -51.92 -0.35 0.35 16 33 H 0.40 2.20 8.47 -40.82 -0.35 1.85 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.70 7.57 -51.93 -0.39 0.30 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.20 7.90 -51.93 -0.41 0.79 16 39 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.06 0.95 7.79 -51.93 -0.40 0.55 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.07 1.92 6.83 -51.93 -0.35 1.56 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 48 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 49 H 0.13 1.11 7.22 -51.92 -0.37 0.74 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -35.89 404.38 -10.01 -45.90 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.49 Total: -0.67 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 0.49 Total: -4.68 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.58 Total: -55.54 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.85 Total: -29.89 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 22.60 SS G_CDS: -0.65 Total: 21.95 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.89 -10.01 -45.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713432901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.755 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds