Wall clock time and date at job start Wed Apr 1 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 120.00061 * 2 1 4 4 C 1.50701 * 109.47591 * 85.00212 * 3 2 1 5 5 O 1.21284 * 119.99429 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00760 * 180.27536 * 4 3 2 7 7 C 1.46497 * 120.00612 * 179.71691 * 6 4 3 8 8 C 1.52999 * 109.47304 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47019 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46870 * 185.08622 * 9 8 7 11 11 H 1.08994 * 109.87660 * 55.66096 * 10 9 8 12 12 C 1.54323 * 109.88198 * 294.64215 * 10 9 8 13 13 C 1.55151 * 102.94587 * 218.39243 * 12 10 9 14 14 C 1.54910 * 101.57943 * 35.50161 * 13 12 10 15 15 N 1.47020 * 109.88182 * 176.67924 * 10 9 8 16 16 C 1.36942 * 125.64969 * 298.31498 * 15 10 9 17 17 H 1.08003 * 119.99556 * 346.80336 * 16 15 10 18 18 C 1.38808 * 120.00368 * 166.81260 * 16 15 10 19 19 N 1.31620 * 119.99939 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47435 * 59.99819 * 20 18 16 22 22 H 1.48498 * 109.47463 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46953 * 299.99771 * 20 18 16 24 24 S 1.65601 * 119.99823 * 179.97438 * 2 1 3 25 25 C 1.81408 * 104.45027 * 270.00083 * 24 2 1 26 26 O 1.42103 * 104.27824 * 26.07281 * 24 2 1 27 27 O 1.42099 * 104.27965 * 153.93218 * 24 2 1 28 28 H 1.08997 * 109.46745 * 89.99991 * 1 2 3 29 29 H 1.09003 * 109.46907 * 210.00264 * 1 2 3 30 30 H 1.09001 * 109.46839 * 330.00197 * 1 2 3 31 31 H 1.09002 * 109.47452 * 324.99597 * 3 2 1 32 32 H 1.09010 * 109.47244 * 204.99849 * 3 2 1 33 33 H 0.97003 * 119.99332 * 359.72318 * 6 4 3 34 34 H 1.08994 * 109.47195 * 300.00290 * 7 6 4 35 35 H 1.09002 * 109.46772 * 60.00437 * 7 6 4 36 36 H 1.09003 * 109.47036 * 299.99987 * 8 7 6 37 37 H 1.08994 * 109.47001 * 60.00181 * 8 7 6 38 38 H 1.09001 * 109.47020 * 305.08111 * 9 8 7 39 39 H 1.08993 * 109.47417 * 65.08601 * 9 8 7 40 40 H 1.09002 * 110.72099 * 336.75999 * 12 10 9 41 41 H 1.09003 * 110.71900 * 100.02825 * 12 10 9 42 42 H 1.09000 * 111.00894 * 153.57668 * 13 12 10 43 43 H 1.09001 * 111.00736 * 277.39252 * 13 12 10 44 44 H 1.09003 * 110.36105 * 81.83594 * 14 13 12 45 45 H 1.09002 * 110.36412 * 204.15196 * 14 13 12 46 46 H 0.97000 * 120.00188 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.47065 * 60.00041 * 25 24 2 48 48 H 1.09001 * 109.47021 * 179.97438 * 25 24 2 49 49 H 1.09001 * 109.46981 * 299.99975 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7657 1.4154 5 8 1.8775 1.1235 2.3337 6 7 2.9806 2.9267 1.6603 7 6 3.1152 3.4129 3.0356 8 6 3.8749 4.7410 3.0351 9 6 4.0160 5.2484 4.4716 10 6 4.6623 6.6352 4.4614 11 1 4.0827 7.3095 3.8310 12 6 6.1088 6.5361 3.9329 13 6 6.8756 7.5454 4.8277 14 6 6.1493 7.3719 6.1850 15 7 4.7299 7.1654 5.8310 16 6 3.6562 7.4236 6.6408 17 1 2.6593 7.4435 6.2257 18 6 3.8490 7.6599 7.9949 19 7 5.0639 7.6353 8.5007 20 14 2.3845 8.0128 9.0993 21 1 1.4500 6.8592 9.0660 22 1 2.8547 8.2283 10.4913 23 1 1.6843 9.2310 8.6187 24 16 2.2930 -1.4342 0.0006 25 6 2.5193 -1.8254 1.7575 26 8 1.3969 -2.3564 -0.6042 27 8 3.5395 -1.1195 -0.6046 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0042 -0.5895 32 1 3.1859 1.1176 -0.4343 33 1 3.3514 3.4404 0.9258 34 1 2.1253 3.5611 3.4671 35 1 3.6638 2.6804 3.6279 36 1 4.8648 4.5931 2.6035 37 1 3.3260 5.4732 2.4430 38 1 3.0306 5.3102 4.9335 39 1 4.6413 4.5603 5.0402 40 1 6.5000 5.5276 4.0666 41 1 6.1581 6.8344 2.8857 42 1 7.9279 7.2736 4.9102 43 1 6.7653 8.5628 4.4523 44 1 6.5395 6.5034 6.7156 45 1 6.2606 8.2702 6.7923 46 1 5.1987 7.8009 9.4470 47 1 1.5451 -1.9178 2.2376 48 1 3.0618 -2.7660 1.8533 49 1 3.0866 -1.0278 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713432901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:14 Heat of formation + Delta-G solvation = -111.815474 kcal Electronic energy + Delta-G solvation = -28715.511285 eV Core-core repulsion = 24611.426679 eV Total energy + Delta-G solvation = -4104.084606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.79674 -39.44592 -38.29290 -37.26167 -37.00082 -36.29395 -34.67250 -33.64673 -31.26392 -30.42079 -30.27373 -28.88010 -26.70211 -26.28031 -25.08954 -22.69418 -21.84757 -21.71927 -20.69447 -19.94337 -18.85321 -18.68421 -18.28430 -17.58475 -17.16526 -16.96335 -16.73596 -16.60534 -16.06880 -15.69900 -15.60352 -15.31608 -15.03745 -14.44241 -14.27179 -14.07921 -13.94193 -13.93876 -13.69646 -13.67430 -13.56218 -13.41135 -13.25093 -13.09693 -12.98101 -12.70866 -12.66126 -12.62998 -12.48267 -12.22194 -12.08174 -12.03777 -11.79509 -11.65733 -11.51977 -11.30507 -11.23215 -11.10940 -10.64497 -10.05978 -9.98955 -8.77362 -7.83945 -5.19296 -0.76111 1.44400 1.46884 1.47853 1.52976 1.60899 2.25203 2.50590 2.82446 3.10047 3.34240 3.62162 3.70324 3.84641 4.00245 4.03724 4.05211 4.09108 4.19378 4.28915 4.35620 4.37829 4.46636 4.47500 4.65296 4.73798 4.81874 4.84781 4.88001 4.89735 4.98305 5.00273 5.02141 5.06919 5.17393 5.25872 5.37325 5.39612 5.46706 5.51804 5.55711 5.69430 5.73197 5.81013 6.28666 6.60075 7.13383 7.26535 7.83726 8.51172 9.27208 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.001926 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.499320 B =14537.626336 C =15364.125693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.986 5.986 3 C 0.097 3.903 4 C 0.480 3.520 5 O -0.573 6.573 6 N -0.713 5.713 7 C 0.126 3.874 8 C -0.109 4.109 9 C -0.112 4.112 10 C 0.151 3.849 11 H 0.036 0.964 12 C -0.110 4.110 13 C -0.138 4.138 14 C 0.173 3.827 15 N -0.620 5.620 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.971 3.029 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.276 1.276 24 S 2.626 3.374 25 C -0.655 4.655 26 O -0.983 6.983 27 O -0.984 6.984 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.420 0.580 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.063 0.937 44 H -0.010 1.010 45 H 0.031 0.969 46 H 0.245 0.755 47 H 0.136 0.864 48 H 0.142 0.858 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -13.901 -22.152 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.823 5.823 3 C -0.032 4.032 4 C 0.266 3.734 5 O -0.452 6.452 6 N -0.366 5.366 7 C 0.001 3.999 8 C -0.148 4.148 9 C -0.152 4.152 10 C 0.045 3.955 11 H 0.053 0.947 12 C -0.148 4.148 13 C -0.177 4.177 14 C 0.047 3.953 15 N -0.345 5.345 16 C -0.359 4.359 17 H 0.095 0.905 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.799 3.201 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.202 1.202 24 S 2.721 3.279 25 C -0.807 4.807 26 O -0.974 6.974 27 O -0.975 6.975 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.008 0.992 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.154 0.846 48 H 0.160 0.840 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.498 -14.764 -22.075 26.935 hybrid contribution -0.640 0.646 2.116 2.303 sum -5.138 -14.118 -19.959 24.981 Atomic orbital electron populations 1.21620 0.76785 1.03854 1.02992 1.57017 1.16085 1.19951 1.89197 1.21500 1.01476 0.87657 0.92611 1.21971 0.77394 0.81063 0.93008 1.90699 1.49211 1.57753 1.47527 1.45925 1.57562 1.23332 1.09785 1.21218 0.99864 0.95743 0.83064 1.21642 1.01585 0.95052 0.96487 1.21814 0.99833 0.97359 0.96224 1.21230 0.96040 0.92606 0.85641 0.94659 1.22586 0.93400 0.99219 0.99609 1.22882 0.99167 0.99463 0.96146 1.21286 0.83439 0.97150 0.93382 1.44932 1.02230 1.74461 1.12844 1.19266 0.87592 1.39827 0.89216 0.90547 1.25653 0.99018 1.03243 0.98133 1.70144 1.20724 1.57120 1.11992 0.85265 0.78888 0.78198 0.77705 1.20555 1.22276 1.20237 1.04326 0.72829 0.72845 0.77931 1.30391 1.12830 1.12497 1.25032 1.93571 1.65242 1.63282 1.75257 1.93548 1.45137 1.83392 1.75375 0.90857 0.90889 0.90355 0.83216 0.84520 0.74235 0.93214 0.93012 0.89200 0.89895 0.94563 0.94229 0.91047 0.88397 0.90176 0.91831 0.99213 0.95024 0.94567 0.84567 0.84002 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.20 127.77 1.30 2.32 16 2 N -0.99 -13.16 2.61 -543.22 -1.42 -14.57 16 3 C 0.10 0.98 6.12 85.64 0.52 1.50 16 4 C 0.48 7.94 7.89 87.66 0.69 8.63 16 5 O -0.57 -13.84 15.01 -3.04 -0.05 -13.88 16 6 N -0.71 -10.14 5.56 -463.07 -2.57 -12.71 16 7 C 0.13 2.64 5.67 86.38 0.49 3.13 16 8 C -0.11 -2.23 5.07 30.59 0.16 -2.08 16 9 C -0.11 -3.66 4.69 30.59 0.14 -3.52 16 10 C 0.15 5.55 3.18 45.34 0.14 5.70 16 11 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 12 C -0.11 -3.22 5.61 31.78 0.18 -3.04 16 13 C -0.14 -4.80 7.09 31.98 0.23 -4.58 16 14 C 0.17 8.44 5.46 86.79 0.47 8.91 16 15 N -0.62 -30.91 3.14 -667.45 -2.09 -33.00 16 16 C -0.23 -12.69 9.75 84.03 0.82 -11.87 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.07 -3.86 5.47 84.86 0.46 -3.40 16 19 N -0.95 -57.68 10.54 21.65 0.23 -57.46 16 20 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 S 2.63 42.65 6.02 -56.49 -0.34 42.31 16 25 C -0.66 -8.88 10.52 113.37 1.19 -7.69 16 26 O -0.98 -21.30 17.09 -127.65 -2.18 -23.48 16 27 O -0.98 -20.61 16.53 -127.65 -2.11 -22.72 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.79 7.79 -2.39 -0.02 0.77 16 30 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 31 H 0.15 0.50 8.11 -2.39 -0.02 0.48 16 32 H 0.14 1.13 6.82 -2.38 -0.02 1.12 16 33 H 0.42 2.91 8.47 -92.71 -0.79 2.12 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.48 7.57 -2.39 -0.02 1.46 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.36 7.90 -2.39 -0.02 1.34 16 39 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 40 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 45 H 0.03 1.76 6.83 -2.39 -0.02 1.75 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.12 1.99 7.22 -2.39 -0.02 1.97 16 Total: -1.00 -81.62 404.38 -1.55 -83.17 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.15 Total: 10.25 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 6.81 Total: -5.99 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -5.85 Total: -117.74 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -4.34 Total: -60.09 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 42.65 SS G_CDS: -0.34 Total: 42.31 kcal Total: -81.62 -1.55 -83.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713432901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.644 kcal (2) G-P(sol) polarization free energy of solvation -81.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds