Wall clock time and date at job start Wed Apr 1 2020 06:04:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46491 * 120.00061 * 2 1
4 4 C 1.50701 * 109.47591 * 85.00212 * 3 2 1
5 5 O 1.21284 * 119.99429 * 359.97438 * 4 3 2
6 6 N 1.34772 * 120.00760 * 180.27536 * 4 3 2
7 7 C 1.46497 * 120.00612 * 179.71691 * 6 4 3
8 8 C 1.52999 * 109.47304 * 180.02562 * 7 6 4
9 9 C 1.52999 * 109.47019 * 180.02562 * 8 7 6
10 10 C 1.53002 * 109.46870 * 185.08622 * 9 8 7
11 11 H 1.08994 * 109.87660 * 55.66096 * 10 9 8
12 12 C 1.54323 * 109.88198 * 294.64215 * 10 9 8
13 13 C 1.55151 * 102.94587 * 218.39243 * 12 10 9
14 14 C 1.54910 * 101.57943 * 35.50161 * 13 12 10
15 15 N 1.47020 * 109.88182 * 176.67924 * 10 9 8
16 16 C 1.36942 * 125.64969 * 298.31498 * 15 10 9
17 17 H 1.08003 * 119.99556 * 346.80336 * 16 15 10
18 18 C 1.38808 * 120.00368 * 166.81260 * 16 15 10
19 19 N 1.31620 * 119.99939 * 359.97438 * 18 16 15
20 20 Si 1.86792 * 120.00128 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.47435 * 59.99819 * 20 18 16
22 22 H 1.48498 * 109.47463 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.46953 * 299.99771 * 20 18 16
24 24 S 1.65601 * 119.99823 * 179.97438 * 2 1 3
25 25 C 1.81408 * 104.45027 * 270.00083 * 24 2 1
26 26 O 1.42103 * 104.27824 * 26.07281 * 24 2 1
27 27 O 1.42099 * 104.27965 * 153.93218 * 24 2 1
28 28 H 1.08997 * 109.46745 * 89.99991 * 1 2 3
29 29 H 1.09003 * 109.46907 * 210.00264 * 1 2 3
30 30 H 1.09001 * 109.46839 * 330.00197 * 1 2 3
31 31 H 1.09002 * 109.47452 * 324.99597 * 3 2 1
32 32 H 1.09010 * 109.47244 * 204.99849 * 3 2 1
33 33 H 0.97003 * 119.99332 * 359.72318 * 6 4 3
34 34 H 1.08994 * 109.47195 * 300.00290 * 7 6 4
35 35 H 1.09002 * 109.46772 * 60.00437 * 7 6 4
36 36 H 1.09003 * 109.47036 * 299.99987 * 8 7 6
37 37 H 1.08994 * 109.47001 * 60.00181 * 8 7 6
38 38 H 1.09001 * 109.47020 * 305.08111 * 9 8 7
39 39 H 1.08993 * 109.47417 * 65.08601 * 9 8 7
40 40 H 1.09002 * 110.72099 * 336.75999 * 12 10 9
41 41 H 1.09003 * 110.71900 * 100.02825 * 12 10 9
42 42 H 1.09000 * 111.00894 * 153.57668 * 13 12 10
43 43 H 1.09001 * 111.00736 * 277.39252 * 13 12 10
44 44 H 1.09003 * 110.36105 * 81.83594 * 14 13 12
45 45 H 1.09002 * 110.36412 * 204.15196 * 14 13 12
46 46 H 0.97000 * 120.00188 * 179.97438 * 19 18 16
47 47 H 1.09000 * 109.47065 * 60.00041 * 25 24 2
48 48 H 1.09001 * 109.47021 * 179.97438 * 25 24 2
49 49 H 1.09001 * 109.46981 * 299.99975 * 25 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2686 0.0000
4 6 2.3415 1.7657 1.4154
5 8 1.8775 1.1235 2.3337
6 7 2.9806 2.9267 1.6603
7 6 3.1152 3.4129 3.0356
8 6 3.8749 4.7410 3.0351
9 6 4.0160 5.2484 4.4716
10 6 4.6623 6.6352 4.4614
11 1 4.0827 7.3095 3.8310
12 6 6.1088 6.5361 3.9329
13 6 6.8756 7.5454 4.8277
14 6 6.1493 7.3719 6.1850
15 7 4.7299 7.1654 5.8310
16 6 3.6562 7.4236 6.6408
17 1 2.6593 7.4435 6.2257
18 6 3.8490 7.6599 7.9949
19 7 5.0639 7.6353 8.5007
20 14 2.3845 8.0128 9.0993
21 1 1.4500 6.8592 9.0660
22 1 2.8547 8.2283 10.4913
23 1 1.6843 9.2310 8.6187
24 16 2.2930 -1.4342 0.0006
25 6 2.5193 -1.8254 1.7575
26 8 1.3969 -2.3564 -0.6042
27 8 3.5395 -1.1195 -0.6046
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 -0.8900 0.5139
30 1 -0.3633 0.8900 0.5138
31 1 1.6502 2.0042 -0.5895
32 1 3.1859 1.1176 -0.4343
33 1 3.3514 3.4404 0.9258
34 1 2.1253 3.5611 3.4671
35 1 3.6638 2.6804 3.6279
36 1 4.8648 4.5931 2.6035
37 1 3.3260 5.4732 2.4430
38 1 3.0306 5.3102 4.9335
39 1 4.6413 4.5603 5.0402
40 1 6.5000 5.5276 4.0666
41 1 6.1581 6.8344 2.8857
42 1 7.9279 7.2736 4.9102
43 1 6.7653 8.5628 4.4523
44 1 6.5395 6.5034 6.7156
45 1 6.2606 8.2702 6.7923
46 1 5.1987 7.8009 9.4470
47 1 1.5451 -1.9178 2.2376
48 1 3.0618 -2.7660 1.8533
49 1 3.0866 -1.0278 2.2372
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713432901.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:04:14
Heat of formation + Delta-G solvation = -111.815474 kcal
Electronic energy + Delta-G solvation = -28715.511285 eV
Core-core repulsion = 24611.426679 eV
Total energy + Delta-G solvation = -4104.084606 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-40.79674 -39.44592 -38.29290 -37.26167 -37.00082 -36.29395 -34.67250 -33.64673
-31.26392 -30.42079 -30.27373 -28.88010 -26.70211 -26.28031 -25.08954 -22.69418
-21.84757 -21.71927 -20.69447 -19.94337 -18.85321 -18.68421 -18.28430 -17.58475
-17.16526 -16.96335 -16.73596 -16.60534 -16.06880 -15.69900 -15.60352 -15.31608
-15.03745 -14.44241 -14.27179 -14.07921 -13.94193 -13.93876 -13.69646 -13.67430
-13.56218 -13.41135 -13.25093 -13.09693 -12.98101 -12.70866 -12.66126 -12.62998
-12.48267 -12.22194 -12.08174 -12.03777 -11.79509 -11.65733 -11.51977 -11.30507
-11.23215 -11.10940 -10.64497 -10.05978 -9.98955 -8.77362 -7.83945 -5.19296
-0.76111 1.44400 1.46884 1.47853 1.52976 1.60899 2.25203 2.50590
2.82446 3.10047 3.34240 3.62162 3.70324 3.84641 4.00245 4.03724
4.05211 4.09108 4.19378 4.28915 4.35620 4.37829 4.46636 4.47500
4.65296 4.73798 4.81874 4.84781 4.88001 4.89735 4.98305 5.00273
5.02141 5.06919 5.17393 5.25872 5.37325 5.39612 5.46706 5.51804
5.55711 5.69430 5.73197 5.81013 6.28666 6.60075 7.13383 7.26535
7.83726 8.51172 9.27208
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.017556 B = 0.001926 C = 0.001822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.499320 B =14537.626336 C =15364.125693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.092 3.908
2 N -0.986 5.986
3 C 0.097 3.903
4 C 0.480 3.520
5 O -0.573 6.573
6 N -0.713 5.713
7 C 0.126 3.874
8 C -0.109 4.109
9 C -0.112 4.112
10 C 0.151 3.849
11 H 0.036 0.964
12 C -0.110 4.110
13 C -0.138 4.138
14 C 0.173 3.827
15 N -0.620 5.620
16 C -0.229 4.229
17 H 0.077 0.923
18 C -0.068 4.068
19 N -0.951 5.951
20 Si 0.971 3.029
21 H -0.279 1.279
22 H -0.296 1.296
23 H -0.276 1.276
24 S 2.626 3.374
25 C -0.655 4.655
26 O -0.983 6.983
27 O -0.984 6.984
28 H 0.073 0.927
29 H 0.072 0.928
30 H 0.078 0.922
31 H 0.150 0.850
32 H 0.137 0.863
33 H 0.420 0.580
34 H 0.049 0.951
35 H 0.051 0.949
36 H 0.089 0.911
37 H 0.082 0.918
38 H 0.035 0.965
39 H 0.039 0.961
40 H 0.071 0.929
41 H 0.098 0.902
42 H 0.080 0.920
43 H 0.063 0.937
44 H -0.010 1.010
45 H 0.031 0.969
46 H 0.245 0.755
47 H 0.136 0.864
48 H 0.142 0.858
49 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.366 -13.901 -22.152 26.514
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 N -0.823 5.823
3 C -0.032 4.032
4 C 0.266 3.734
5 O -0.452 6.452
6 N -0.366 5.366
7 C 0.001 3.999
8 C -0.148 4.148
9 C -0.152 4.152
10 C 0.045 3.955
11 H 0.053 0.947
12 C -0.148 4.148
13 C -0.177 4.177
14 C 0.047 3.953
15 N -0.345 5.345
16 C -0.359 4.359
17 H 0.095 0.905
18 C -0.260 4.260
19 N -0.600 5.600
20 Si 0.799 3.201
21 H -0.206 1.206
22 H -0.223 1.223
23 H -0.202 1.202
24 S 2.721 3.279
25 C -0.807 4.807
26 O -0.974 6.974
27 O -0.975 6.975
28 H 0.091 0.909
29 H 0.091 0.909
30 H 0.096 0.904
31 H 0.168 0.832
32 H 0.155 0.845
33 H 0.258 0.742
34 H 0.068 0.932
35 H 0.070 0.930
36 H 0.108 0.892
37 H 0.101 0.899
38 H 0.054 0.946
39 H 0.058 0.942
40 H 0.090 0.910
41 H 0.116 0.884
42 H 0.098 0.902
43 H 0.082 0.918
44 H 0.008 0.992
45 H 0.050 0.950
46 H 0.054 0.946
47 H 0.154 0.846
48 H 0.160 0.840
49 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -4.498 -14.764 -22.075 26.935
hybrid contribution -0.640 0.646 2.116 2.303
sum -5.138 -14.118 -19.959 24.981
Atomic orbital electron populations
1.21620 0.76785 1.03854 1.02992 1.57017 1.16085 1.19951 1.89197
1.21500 1.01476 0.87657 0.92611 1.21971 0.77394 0.81063 0.93008
1.90699 1.49211 1.57753 1.47527 1.45925 1.57562 1.23332 1.09785
1.21218 0.99864 0.95743 0.83064 1.21642 1.01585 0.95052 0.96487
1.21814 0.99833 0.97359 0.96224 1.21230 0.96040 0.92606 0.85641
0.94659 1.22586 0.93400 0.99219 0.99609 1.22882 0.99167 0.99463
0.96146 1.21286 0.83439 0.97150 0.93382 1.44932 1.02230 1.74461
1.12844 1.19266 0.87592 1.39827 0.89216 0.90547 1.25653 0.99018
1.03243 0.98133 1.70144 1.20724 1.57120 1.11992 0.85265 0.78888
0.78198 0.77705 1.20555 1.22276 1.20237 1.04326 0.72829 0.72845
0.77931 1.30391 1.12830 1.12497 1.25032 1.93571 1.65242 1.63282
1.75257 1.93548 1.45137 1.83392 1.75375 0.90857 0.90889 0.90355
0.83216 0.84520 0.74235 0.93214 0.93012 0.89200 0.89895 0.94563
0.94229 0.91047 0.88397 0.90176 0.91831 0.99213 0.95024 0.94567
0.84567 0.84002 0.85674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.02 10.20 127.77 1.30 2.32 16
2 N -0.99 -13.16 2.61 -543.22 -1.42 -14.57 16
3 C 0.10 0.98 6.12 85.64 0.52 1.50 16
4 C 0.48 7.94 7.89 87.66 0.69 8.63 16
5 O -0.57 -13.84 15.01 -3.04 -0.05 -13.88 16
6 N -0.71 -10.14 5.56 -463.07 -2.57 -12.71 16
7 C 0.13 2.64 5.67 86.38 0.49 3.13 16
8 C -0.11 -2.23 5.07 30.59 0.16 -2.08 16
9 C -0.11 -3.66 4.69 30.59 0.14 -3.52 16
10 C 0.15 5.55 3.18 45.34 0.14 5.70 16
11 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
12 C -0.11 -3.22 5.61 31.78 0.18 -3.04 16
13 C -0.14 -4.80 7.09 31.98 0.23 -4.58 16
14 C 0.17 8.44 5.46 86.79 0.47 8.91 16
15 N -0.62 -30.91 3.14 -667.45 -2.09 -33.00 16
16 C -0.23 -12.69 9.75 84.03 0.82 -11.87 16
17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16
18 C -0.07 -3.86 5.47 84.86 0.46 -3.40 16
19 N -0.95 -57.68 10.54 21.65 0.23 -57.46 16
20 Si 0.97 46.06 29.55 68.60 2.03 48.09 16
21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16
23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
24 S 2.63 42.65 6.02 -56.49 -0.34 42.31 16
25 C -0.66 -8.88 10.52 113.37 1.19 -7.69 16
26 O -0.98 -21.30 17.09 -127.65 -2.18 -23.48 16
27 O -0.98 -20.61 16.53 -127.65 -2.11 -22.72 16
28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
29 H 0.07 0.79 7.79 -2.39 -0.02 0.77 16
30 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16
31 H 0.15 0.50 8.11 -2.39 -0.02 0.48 16
32 H 0.14 1.13 6.82 -2.38 -0.02 1.12 16
33 H 0.42 2.91 8.47 -92.71 -0.79 2.12 16
34 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16
35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
36 H 0.09 1.48 7.57 -2.39 -0.02 1.46 16
37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
38 H 0.04 1.36 7.90 -2.39 -0.02 1.34 16
39 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16
40 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16
41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16
42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16
43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
44 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16
45 H 0.03 1.76 6.83 -2.39 -0.02 1.75 16
46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16
47 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16
48 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16
49 H 0.12 1.99 7.22 -2.39 -0.02 1.97 16
Total: -1.00 -81.62 404.38 -1.55 -83.17
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: 0.15 Total: 10.25 kcal
Atomic # 6 Polarization: -12.80 SS G_CDS: 6.81 Total: -5.99 kcal
Atomic # 7 Polarization: -111.89 SS G_CDS: -5.85 Total: -117.74 kcal
Atomic # 8 Polarization: -55.75 SS G_CDS: -4.34 Total: -60.09 kcal
Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal
Atomic # 16 Polarization: 42.65 SS G_CDS: -0.34 Total: 42.31 kcal
Total: -81.62 -1.55 -83.17 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713432901.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.644 kcal
(2) G-P(sol) polarization free energy of solvation -81.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.266 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds