Wall clock time and date at job start Wed Apr 1 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00071 * 2 1 4 4 H 1.08000 * 120.00490 * 201.07193 * 3 2 1 5 5 C 1.38811 * 120.00032 * 21.06970 * 3 2 1 6 6 N 1.31622 * 120.00118 * 13.21602 * 5 3 2 7 7 Si 1.86799 * 120.00153 * 193.21636 * 5 3 2 8 8 H 1.48500 * 109.47419 * 89.99929 * 7 5 3 9 9 H 1.48500 * 109.47293 * 210.00103 * 7 5 3 10 10 H 1.48496 * 109.47213 * 329.99983 * 7 5 3 11 11 C 1.46504 * 119.99903 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46833 * 90.00205 * 11 2 1 13 13 C 1.53045 * 109.46036 * 175.00065 * 12 11 2 14 14 C 1.53190 * 109.31176 * 181.36999 * 13 12 11 15 15 N 1.46924 * 108.89441 * 305.29100 * 14 13 12 16 16 C 1.34779 * 120.62961 * 233.67825 * 15 14 13 17 17 O 1.21277 * 120.00153 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99735 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47093 * 180.02562 * 18 16 15 20 20 N 1.46504 * 109.47381 * 180.02562 * 19 18 16 21 21 S 1.65595 * 119.99916 * 165.00151 * 20 19 18 22 22 C 1.81394 * 104.45510 * 64.99825 * 21 20 19 23 23 O 1.42102 * 104.27630 * 181.06832 * 21 20 19 24 24 O 1.42103 * 104.27852 * 308.92102 * 21 20 19 25 25 C 1.47208 * 118.55641 * 53.54039 * 15 14 13 26 26 C 1.53049 * 109.44816 * 295.05781 * 12 11 2 27 27 H 1.08997 * 109.46946 * 275.21759 * 1 2 3 28 28 H 1.08999 * 109.47300 * 35.21708 * 1 2 3 29 29 H 1.09004 * 109.47004 * 155.22430 * 1 2 3 30 30 H 0.96997 * 120.00049 * 179.97438 * 6 5 3 31 31 H 1.08994 * 109.47351 * 329.99877 * 11 2 1 32 32 H 1.09004 * 109.47006 * 209.99692 * 11 2 1 33 33 H 1.08993 * 109.46418 * 55.02605 * 12 11 2 34 34 H 1.09001 * 109.49532 * 61.41385 * 13 12 11 35 35 H 1.09003 * 109.51878 * 301.34015 * 13 12 11 36 36 H 1.08995 * 109.58571 * 65.15335 * 14 13 12 37 37 H 1.09004 * 109.58435 * 185.43234 * 14 13 12 38 38 H 1.09006 * 109.47185 * 299.99364 * 18 16 15 39 39 H 1.08997 * 109.47714 * 59.99867 * 18 16 15 40 40 H 1.09002 * 109.47267 * 299.99626 * 19 18 16 41 41 H 1.08996 * 109.47482 * 59.99495 * 19 18 16 42 42 H 0.96994 * 119.99563 * 344.99178 * 20 19 18 43 43 H 1.08996 * 109.47037 * 59.99562 * 22 21 20 44 44 H 1.09001 * 109.47214 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.46737 * 299.99715 * 22 21 20 46 46 H 1.09001 * 109.53476 * 186.67529 * 25 15 14 47 47 H 1.09007 * 109.67214 * 66.36580 * 25 15 14 48 48 H 1.09002 * 109.49398 * 298.57666 * 26 12 11 49 49 H 1.09000 * 109.49422 * 58.67293 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1755 1.2172 -0.3363 5 6 1.5252 2.3478 0.4322 6 7 0.3814 2.2785 1.0797 7 14 2.3082 4.0099 0.0948 8 1 1.8234 4.5300 -1.2090 9 1 1.9386 4.9596 1.1749 10 1 3.7851 3.8615 0.0502 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.3240 -2.9691 -1.4428 14 6 3.6056 -3.3891 -2.8889 15 7 2.3275 -3.5433 -3.5969 16 6 2.0355 -4.6883 -4.2453 17 8 2.8313 -5.6034 -4.2483 18 6 0.7205 -4.8308 -4.9675 19 6 0.6410 -6.2154 -5.6135 20 7 -0.6371 -6.3539 -6.3161 21 16 -0.8533 -7.5803 -7.4076 22 6 -0.7590 -9.0940 -6.4124 23 8 -2.1736 -7.3862 -7.8959 24 8 0.2696 -7.4815 -8.2728 25 6 1.3737 -2.4222 -3.5796 26 6 1.1171 -2.0130 -2.1258 27 1 -0.3633 0.0935 1.0234 28 1 -0.3634 0.8396 -0.5926 29 1 -0.3633 -0.9331 -0.4307 30 1 -0.0547 3.0904 1.3820 31 1 1.6085 -2.0282 0.5147 32 1 3.1500 -1.1382 0.5143 33 1 2.9646 -0.9141 -1.9808 34 1 2.8018 -3.7738 -0.9252 35 1 4.2655 -2.7604 -0.9346 36 1 4.2061 -2.6243 -3.3811 37 1 4.1439 -4.3369 -2.8958 38 1 -0.0984 -4.7140 -4.2576 39 1 0.6447 -4.0646 -5.7390 40 1 1.4599 -6.3328 -6.3233 41 1 0.7166 -6.9814 -4.8418 42 1 -1.3566 -5.7272 -6.1419 43 1 -1.5428 -9.0803 -5.6551 44 1 -0.8920 -9.9621 -7.0580 45 1 0.2151 -9.1490 -5.9263 46 1 0.4371 -2.7333 -4.0424 47 1 1.7900 -1.5777 -4.1289 48 1 0.6158 -2.8267 -1.6018 49 1 0.4879 -1.1232 -2.1040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713764277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:38 Heat of formation + Delta-G solvation = -115.798434 kcal Electronic energy + Delta-G solvation = -28961.049220 eV Core-core repulsion = 24856.791900 eV Total energy + Delta-G solvation = -4104.257320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.24364 -39.09399 -38.15900 -37.15439 -37.01385 -36.54201 -34.52129 -32.84566 -31.98100 -30.97844 -30.24093 -28.57697 -27.76807 -25.47589 -24.53247 -23.70522 -22.39977 -21.29804 -20.56972 -19.75996 -18.71015 -18.52785 -18.15968 -17.32477 -17.03705 -16.92333 -16.74747 -16.62366 -15.69260 -15.60593 -15.50341 -15.28249 -15.07996 -14.79492 -14.52644 -14.27653 -14.02459 -13.93858 -13.77826 -13.60392 -13.37084 -13.23875 -13.18815 -13.06750 -12.84649 -12.78880 -12.62981 -12.55364 -12.45211 -12.34713 -12.08445 -11.93716 -11.92311 -11.85691 -11.80545 -11.28005 -11.16875 -10.77792 -10.57060 -10.40750 -9.62774 -8.69839 -7.77601 -5.24124 -0.65056 1.47795 1.48900 1.56972 1.63497 1.70897 2.12460 2.53761 2.90576 3.29443 3.34440 3.53045 3.71309 3.76381 3.93068 4.06019 4.08014 4.14690 4.18988 4.23021 4.23490 4.41682 4.49196 4.54368 4.62581 4.64762 4.81744 4.86790 4.87784 4.89691 4.94440 4.97649 5.05684 5.10640 5.14020 5.18354 5.21967 5.35725 5.44492 5.65385 5.66169 5.69462 5.80580 6.14100 6.37344 6.45866 7.16213 7.21151 7.95388 8.37055 9.24642 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.001929 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.602099 B =14513.415986 C =15090.197903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.617 5.617 3 C -0.250 4.250 4 H 0.069 0.931 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.963 3.037 8 H -0.287 1.287 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.154 3.846 12 C -0.097 4.097 13 C -0.116 4.116 14 C 0.114 3.886 15 N -0.607 5.607 16 C 0.515 3.485 17 O -0.584 6.584 18 C -0.145 4.145 19 C 0.128 3.872 20 N -1.114 6.114 21 S 2.626 3.374 22 C -0.655 4.655 23 O -0.998 6.998 24 O -1.004 7.004 25 C 0.110 3.890 26 C -0.119 4.119 27 H -0.007 1.007 28 H 0.015 0.985 29 H 0.041 0.959 30 H 0.246 0.754 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.427 0.573 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.114 0.886 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -21.416 -13.292 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.340 5.340 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.793 3.207 8 H -0.214 1.214 9 H -0.226 1.226 10 H -0.195 1.195 11 C 0.029 3.971 12 C -0.118 4.118 13 C -0.154 4.154 14 C -0.009 4.009 15 N -0.340 5.340 16 C 0.304 3.696 17 O -0.465 6.465 18 C -0.186 4.186 19 C 0.002 3.998 20 N -0.875 5.875 21 S 2.721 3.279 22 C -0.809 4.809 23 O -0.988 6.988 24 O -0.994 6.994 25 C -0.012 4.012 26 C -0.157 4.157 27 H 0.012 0.988 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.263 0.737 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.132 0.868 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.029 -21.772 -14.201 26.073 hybrid contribution 0.149 1.439 0.968 1.741 sum -1.880 -20.332 -13.233 24.332 Atomic orbital electron populations 1.20593 0.82728 0.96163 0.97141 1.44125 1.02103 1.01536 1.86212 1.19481 0.97200 0.86459 1.34955 0.91321 1.25699 0.98629 1.01527 0.99372 1.70246 1.19708 1.26976 1.41977 0.85312 0.78344 0.80312 0.76770 1.21375 1.22608 1.19517 1.20918 0.95066 0.86563 0.94597 1.21603 0.96129 0.96243 0.97819 1.21813 1.00485 0.97191 0.95941 1.21543 0.85251 1.02039 0.92023 1.48308 1.18985 1.15130 1.51552 1.20959 0.89114 0.81077 0.78445 1.90680 1.52065 1.40419 1.63312 1.21882 0.95410 0.99442 1.01890 1.21011 0.84483 0.97694 0.96657 1.55305 1.22442 1.47249 1.62536 1.04103 0.72261 0.77029 0.74463 1.30348 1.13576 1.20055 1.16912 1.93577 1.40080 1.85754 1.79398 1.93571 1.54671 1.86490 1.64686 1.21968 0.93467 0.88551 0.97186 1.21890 0.97424 1.01281 0.95155 0.98831 0.96664 0.94105 0.94514 0.93924 0.94572 0.92890 0.91751 0.90464 0.91336 0.89854 0.85222 0.86348 0.91096 0.89646 0.73669 0.83017 0.83753 0.83940 0.86830 0.91131 0.91651 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.25 7.86 127.77 1.00 9.26 16 2 N -0.62 -28.89 2.75 -726.93 -2.00 -30.89 16 3 C -0.25 -13.18 9.67 84.03 0.81 -12.37 16 4 H 0.07 3.53 7.86 -2.91 -0.02 3.51 16 5 C -0.06 -3.17 5.10 84.86 0.43 -2.74 16 6 N -0.94 -54.80 10.61 21.65 0.23 -54.57 16 7 Si 0.96 44.30 29.57 68.60 2.03 46.33 16 8 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 9 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 C 0.15 5.68 5.14 86.38 0.44 6.12 16 12 C -0.10 -2.78 2.36 -10.76 -0.03 -2.81 16 13 C -0.12 -2.69 5.36 30.67 0.16 -2.53 16 14 C 0.11 2.51 6.42 86.36 0.55 3.07 16 15 N -0.61 -12.26 2.98 -818.19 -2.44 -14.70 16 16 C 0.51 10.31 7.70 87.66 0.68 10.99 16 17 O -0.58 -15.74 15.39 -3.02 -0.05 -15.79 16 18 C -0.15 -1.67 4.20 29.85 0.13 -1.54 16 19 C 0.13 1.54 5.42 86.38 0.47 2.00 16 20 N -1.11 -10.32 5.89 -187.48 -1.10 -11.42 16 21 S 2.63 32.45 6.10 -56.49 -0.34 32.10 16 22 C -0.66 -2.71 10.89 113.37 1.23 -1.47 16 23 O -1.00 -19.37 18.08 -127.65 -2.31 -21.68 16 24 O -1.00 -21.74 17.50 -127.65 -2.23 -23.98 16 25 C 0.11 2.00 6.35 86.31 0.55 2.54 16 26 C -0.12 -2.92 4.40 30.67 0.14 -2.78 16 27 H -0.01 -0.35 7.38 -2.39 -0.02 -0.37 16 28 H 0.01 0.75 7.22 -2.39 -0.02 0.73 16 29 H 0.04 1.52 6.20 -2.38 -0.01 1.51 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.04 1.38 8.04 -2.38 -0.02 1.36 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.95 7.00 -2.39 -0.02 1.93 16 38 H 0.13 0.84 7.70 -2.38 -0.02 0.82 16 39 H 0.12 1.05 7.96 -2.39 -0.02 1.04 16 40 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 41 H 0.09 0.82 8.10 -2.39 -0.02 0.80 16 42 H 0.43 2.47 8.62 -96.75 -0.83 1.63 16 43 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.11 1.31 5.97 -2.39 -0.01 1.30 16 47 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.07 2.03 5.87 -2.39 -0.01 2.02 16 Total: -1.00 -80.12 396.29 -1.53 -81.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.11 Total: 5.19 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.57 Total: 7.75 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -5.31 Total: -111.59 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -4.59 Total: -61.44 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 32.45 SS G_CDS: -0.34 Total: 32.10 kcal Total: -80.12 -1.53 -81.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713764277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.143 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds