Wall clock time and date at job start Wed Apr 1 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.46986 * 2 1 4 4 O 1.42105 * 110.54530 * 291.62628 * 3 2 1 5 5 O 1.42101 * 110.54333 * 68.37799 * 3 2 1 6 6 N 1.65599 * 104.44748 * 180.02562 * 3 2 1 7 7 C 1.46496 * 120.00146 * 65.00260 * 6 3 2 8 8 C 1.50703 * 109.47244 * 164.99927 * 7 6 3 9 9 O 1.21274 * 119.99932 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99749 * 179.97438 * 8 7 6 11 11 C 1.46925 * 120.63270 * 359.72453 * 10 8 7 12 12 C 1.53632 * 108.54095 * 126.36482 * 11 10 8 13 13 C 1.53036 * 109.24448 * 54.85610 * 12 11 10 14 14 C 1.53046 * 109.53733 * 298.51059 * 13 12 11 15 15 H 1.08990 * 109.52404 * 301.39792 * 14 13 12 16 16 C 1.52998 * 109.49597 * 181.31409 * 14 13 12 17 17 C 1.53001 * 109.46902 * 175.16207 * 16 14 13 18 18 N 1.46507 * 109.46843 * 179.97438 * 17 16 14 19 19 C 1.36937 * 119.99597 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00159 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99526 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99712 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00499 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47051 * 89.99907 * 23 21 19 25 25 H 1.48502 * 109.47254 * 210.00328 * 23 21 19 26 26 H 1.48503 * 109.47018 * 330.00332 * 23 21 19 27 27 C 1.46928 * 120.62755 * 179.97438 * 10 8 7 28 28 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47080 * 299.99725 * 1 2 3 30 30 H 1.09005 * 109.47285 * 59.99790 * 1 2 3 31 31 H 1.09003 * 109.46593 * 240.00075 * 2 1 3 32 32 H 1.08994 * 109.46870 * 120.00443 * 2 1 3 33 33 H 0.97001 * 120.00004 * 244.99733 * 6 3 2 34 34 H 1.09006 * 109.47217 * 284.99705 * 7 6 3 35 35 H 1.08999 * 109.47705 * 44.99940 * 7 6 3 36 36 H 1.08996 * 109.58724 * 246.19644 * 11 10 8 37 37 H 1.09001 * 109.58361 * 6.62496 * 11 10 8 38 38 H 1.08999 * 109.63306 * 294.86055 * 12 11 10 39 39 H 1.09000 * 109.42734 * 174.72673 * 12 11 10 40 40 H 1.08998 * 109.46140 * 178.48862 * 13 12 11 41 41 H 1.09002 * 109.45792 * 58.52855 * 13 12 11 42 42 H 1.09005 * 109.47019 * 295.16106 * 16 14 13 43 43 H 1.08999 * 109.47328 * 55.16484 * 16 14 13 44 44 H 1.08997 * 109.46914 * 299.99608 * 17 16 14 45 45 H 1.08995 * 109.47261 * 60.00358 * 17 16 14 46 46 H 0.96996 * 119.99978 * 0.02562 * 18 17 16 47 47 H 0.97000 * 120.00158 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58701 * 353.37585 * 27 10 8 49 49 H 1.08996 * 109.58357 * 113.65954 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8385 2.3438 1.2370 6 7 3.7842 1.5652 -0.0007 7 6 4.4665 0.9672 -1.1509 8 6 5.9392 1.2789 -1.0793 9 8 6.3759 1.9355 -0.1579 10 7 6.7711 0.8271 -2.0386 11 6 6.2580 0.0245 -3.1572 12 6 6.7034 0.6799 -4.4734 13 6 8.2247 0.8455 -4.4650 14 6 8.6335 1.7613 -3.3089 15 1 8.1440 2.7287 -3.4200 16 6 10.1514 1.9525 -3.3211 17 6 10.5469 2.9620 -2.2416 18 7 12.0005 3.1447 -2.2528 19 6 12.5890 4.0074 -1.3670 20 1 11.9817 4.5527 -0.6599 21 6 13.9662 4.1808 -1.3781 22 7 14.5318 5.0103 -0.5270 23 14 15.0167 3.2370 -2.6007 24 1 15.1564 4.0296 -3.8488 25 1 16.3598 2.9942 -2.0156 26 1 14.3691 1.9369 -2.9099 27 6 8.2091 1.1233 -1.9828 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.2988 1.8764 0.7604 34 1 4.3228 -0.1132 -1.1373 35 1 4.0529 1.3771 -2.0723 36 1 6.6594 -0.9870 -3.0955 37 1 5.1694 -0.0087 -3.1140 38 1 6.2315 1.6573 -4.5738 39 1 6.4110 0.0465 -5.3109 40 1 8.5473 1.2857 -5.4085 41 1 8.6954 -0.1296 -4.3397 42 1 10.6394 0.9983 -3.1225 43 1 10.4630 2.3238 -4.2974 44 1 10.0589 3.9162 -2.4402 45 1 10.2354 2.5908 -1.2653 46 1 12.5460 2.6546 -2.8877 47 1 15.4942 5.1313 -0.5344 48 1 8.4082 1.8153 -1.1644 49 1 8.7664 0.2001 -1.8244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714211021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:59 Heat of formation + Delta-G solvation = -102.500677 kcal Electronic energy + Delta-G solvation = -28804.222388 eV Core-core repulsion = 24700.541702 eV Total energy + Delta-G solvation = -4103.680686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.60256 -38.19132 -37.52622 -36.38366 -35.57755 -35.16901 -33.73819 -33.65139 -32.27464 -31.01392 -28.62130 -27.39326 -25.15043 -24.64379 -24.20721 -22.40863 -20.99207 -20.53547 -19.90874 -19.47519 -18.44188 -17.50921 -17.30882 -17.05818 -16.57689 -16.20604 -15.97385 -15.36941 -15.05068 -14.75497 -14.64222 -14.33716 -14.17926 -13.89250 -13.66226 -13.55282 -13.50952 -13.21207 -13.08156 -12.85803 -12.75030 -12.53099 -12.48664 -12.42248 -12.34077 -12.15870 -11.63565 -11.36847 -11.34088 -11.24330 -11.16686 -10.93450 -10.67001 -10.57802 -10.30734 -10.20727 -10.02420 -9.95921 -9.54903 -8.90302 -8.85234 -7.18942 -5.72629 -3.08114 -0.25635 2.14417 2.26424 2.68807 3.31582 3.38746 3.41162 3.46566 3.66361 3.92387 4.01826 4.21994 4.34662 4.52350 4.56105 4.58751 4.61969 4.63455 4.71356 4.79411 4.91462 4.95943 4.99920 5.08081 5.14574 5.28729 5.34328 5.39923 5.48605 5.52161 5.56604 5.65017 5.77145 5.81672 5.88387 5.98179 6.08906 6.17987 6.23015 6.35521 6.53076 6.78315 6.80655 7.07594 7.82157 8.04765 8.46442 9.25708 9.97812 10.17760 11.45926 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002036 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.233694 B =13750.561931 C =14866.420899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.614 3.386 4 O -0.953 6.953 5 O -0.950 6.950 6 N -1.109 6.109 7 C 0.096 3.904 8 C 0.511 3.489 9 O -0.523 6.523 10 N -0.609 5.609 11 C 0.102 3.898 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.096 4.096 15 H 0.077 0.923 16 C -0.123 4.123 17 C 0.154 3.846 18 N -0.757 5.757 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.887 3.113 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.113 3.887 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.429 0.571 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.028 0.972 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.102 0.898 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.864 -18.532 -6.733 35.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.763 4.763 3 S 2.705 3.295 4 O -0.943 6.943 5 O -0.940 6.940 6 N -0.872 5.872 7 C -0.035 4.035 8 C 0.297 3.703 9 O -0.398 6.398 10 N -0.343 5.343 11 C -0.021 4.021 12 C -0.174 4.174 13 C -0.154 4.154 14 C -0.116 4.116 15 H 0.095 0.905 16 C -0.161 4.161 17 C 0.027 3.973 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.583 5.583 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.008 4.008 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.268 0.732 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.192 0.808 47 H 0.069 0.931 48 H 0.121 0.879 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -30.177 -17.264 -6.184 35.312 hybrid contribution 1.360 -1.339 -0.637 2.011 sum -28.817 -18.603 -6.821 34.972 Atomic orbital electron populations 1.21516 0.90255 1.05218 1.03689 1.30524 1.07534 1.26428 1.11773 1.05012 0.72712 0.77261 0.74523 1.93614 1.83192 1.71883 1.45609 1.93637 1.82687 1.72745 1.44931 1.55436 1.25945 1.77987 1.27818 1.21150 0.92331 0.99163 0.90819 1.20307 0.87910 0.79735 0.82349 1.90755 1.76969 1.38556 1.33544 1.48118 1.08889 1.53037 1.24221 1.21936 0.99191 0.94821 0.86132 1.22010 0.97166 1.01737 0.96513 1.21599 0.94768 1.00149 0.98835 1.21452 0.96736 0.99372 0.94058 0.90463 1.21783 0.93325 1.00429 1.00559 1.20699 0.85357 0.95612 0.95637 1.42719 1.02003 1.52768 1.42789 1.19092 0.91166 1.16157 1.10840 0.89218 1.24697 0.96388 0.99399 0.98931 1.69711 1.10099 1.39646 1.38840 0.86512 0.80350 0.79919 0.81517 1.21136 1.21762 1.20403 1.21872 0.78225 1.01328 0.99415 0.89879 0.90791 0.90800 0.85060 0.84676 0.73207 0.88853 0.87162 0.90716 0.89938 0.91129 0.90549 0.91318 0.91642 0.91814 0.91514 0.95602 0.95392 0.80771 0.93111 0.87946 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.92 37.16 0.37 -0.15 16 2 C -0.63 -2.09 6.79 37.16 0.25 -1.84 16 3 S 2.61 19.77 5.46 -107.50 -0.59 19.19 16 4 O -0.95 -10.08 17.49 -57.54 -1.01 -11.08 16 5 O -0.95 -10.80 18.08 -57.54 -1.04 -11.84 16 6 N -1.11 -8.71 5.82 -11.66 -0.07 -8.78 16 7 C 0.10 0.62 4.96 -5.19 -0.03 0.60 16 8 C 0.51 5.47 7.77 -10.98 -0.09 5.38 16 9 O -0.52 -7.94 15.14 5.56 0.08 -7.86 16 10 N -0.61 -5.69 2.97 -172.52 -0.51 -6.20 16 11 C 0.10 0.56 6.37 -3.48 -0.02 0.54 16 12 C -0.14 -0.82 6.10 -26.38 -0.16 -0.98 16 13 C -0.12 -0.95 5.16 -26.69 -0.14 -1.09 16 14 C -0.10 -1.09 2.34 -90.52 -0.21 -1.30 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.12 -1.75 4.80 -26.73 -0.13 -1.88 16 17 C 0.15 3.01 6.02 -4.04 -0.02 2.99 16 18 N -0.76 -18.48 5.41 -59.91 -0.32 -18.81 16 19 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 20 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 21 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 22 N -0.93 -30.08 13.97 55.49 0.78 -29.31 16 23 Si 0.89 22.44 27.74 -169.99 -4.71 17.73 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 27 C 0.11 1.32 5.32 -3.73 -0.02 1.30 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.13 0.12 8.14 -51.92 -0.42 -0.30 16 32 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.43 3.94 7.67 -34.47 -0.26 3.68 16 34 H 0.09 0.22 7.93 -51.93 -0.41 -0.19 16 35 H 0.11 0.58 7.26 -51.93 -0.38 0.21 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.23 5.93 -51.93 -0.31 -0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.57 6.70 -51.93 -0.35 0.22 16 46 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 47 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 48 H 0.10 1.52 5.72 -51.93 -0.30 1.22 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -40.43 399.55 -9.98 -50.42 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.16 Total: 4.27 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.45 Total: -3.75 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.13 Total: -63.09 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.96 Total: -30.78 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: 19.77 SS G_CDS: -0.59 Total: 19.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -40.43 -9.98 -50.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714211021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.086 kcal (2) G-P(sol) polarization free energy of solvation -40.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds