Wall clock time and date at job start Wed Apr 1 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.46986 * 2 1 4 4 O 1.42105 * 110.54530 * 291.62628 * 3 2 1 5 5 O 1.42101 * 110.54333 * 68.37799 * 3 2 1 6 6 N 1.65599 * 104.44748 * 180.02562 * 3 2 1 7 7 C 1.46496 * 120.00146 * 65.00260 * 6 3 2 8 8 C 1.50703 * 109.47244 * 164.99927 * 7 6 3 9 9 O 1.21274 * 119.99932 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99749 * 179.97438 * 8 7 6 11 11 C 1.46925 * 120.63270 * 359.72453 * 10 8 7 12 12 C 1.53632 * 108.54095 * 126.36482 * 11 10 8 13 13 C 1.53036 * 109.24448 * 54.85610 * 12 11 10 14 14 C 1.53046 * 109.53733 * 298.51059 * 13 12 11 15 15 H 1.08990 * 109.52404 * 301.39792 * 14 13 12 16 16 C 1.52998 * 109.49597 * 181.31409 * 14 13 12 17 17 C 1.53001 * 109.46902 * 175.16207 * 16 14 13 18 18 N 1.46507 * 109.46843 * 179.97438 * 17 16 14 19 19 C 1.36937 * 119.99597 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00159 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99526 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99712 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00499 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47051 * 89.99907 * 23 21 19 25 25 H 1.48502 * 109.47254 * 210.00328 * 23 21 19 26 26 H 1.48503 * 109.47018 * 330.00332 * 23 21 19 27 27 C 1.46928 * 120.62755 * 179.97438 * 10 8 7 28 28 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47080 * 299.99725 * 1 2 3 30 30 H 1.09005 * 109.47285 * 59.99790 * 1 2 3 31 31 H 1.09003 * 109.46593 * 240.00075 * 2 1 3 32 32 H 1.08994 * 109.46870 * 120.00443 * 2 1 3 33 33 H 0.97001 * 120.00004 * 244.99733 * 6 3 2 34 34 H 1.09006 * 109.47217 * 284.99705 * 7 6 3 35 35 H 1.08999 * 109.47705 * 44.99940 * 7 6 3 36 36 H 1.08996 * 109.58724 * 246.19644 * 11 10 8 37 37 H 1.09001 * 109.58361 * 6.62496 * 11 10 8 38 38 H 1.08999 * 109.63306 * 294.86055 * 12 11 10 39 39 H 1.09000 * 109.42734 * 174.72673 * 12 11 10 40 40 H 1.08998 * 109.46140 * 178.48862 * 13 12 11 41 41 H 1.09002 * 109.45792 * 58.52855 * 13 12 11 42 42 H 1.09005 * 109.47019 * 295.16106 * 16 14 13 43 43 H 1.08999 * 109.47328 * 55.16484 * 16 14 13 44 44 H 1.08997 * 109.46914 * 299.99608 * 17 16 14 45 45 H 1.08995 * 109.47261 * 60.00358 * 17 16 14 46 46 H 0.96996 * 119.99978 * 0.02562 * 18 17 16 47 47 H 0.97000 * 120.00158 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58701 * 353.37585 * 27 10 8 49 49 H 1.08996 * 109.58357 * 113.65954 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8385 2.3438 1.2370 6 7 3.7842 1.5652 -0.0007 7 6 4.4665 0.9672 -1.1509 8 6 5.9392 1.2789 -1.0793 9 8 6.3759 1.9355 -0.1579 10 7 6.7711 0.8271 -2.0386 11 6 6.2580 0.0245 -3.1572 12 6 6.7034 0.6799 -4.4734 13 6 8.2247 0.8455 -4.4650 14 6 8.6335 1.7613 -3.3089 15 1 8.1440 2.7287 -3.4200 16 6 10.1514 1.9525 -3.3211 17 6 10.5469 2.9620 -2.2416 18 7 12.0005 3.1447 -2.2528 19 6 12.5890 4.0074 -1.3670 20 1 11.9817 4.5527 -0.6599 21 6 13.9662 4.1808 -1.3781 22 7 14.5318 5.0103 -0.5270 23 14 15.0167 3.2370 -2.6007 24 1 15.1564 4.0296 -3.8488 25 1 16.3598 2.9942 -2.0156 26 1 14.3691 1.9369 -2.9099 27 6 8.2091 1.1233 -1.9828 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.2988 1.8764 0.7604 34 1 4.3228 -0.1132 -1.1373 35 1 4.0529 1.3771 -2.0723 36 1 6.6594 -0.9870 -3.0955 37 1 5.1694 -0.0087 -3.1140 38 1 6.2315 1.6573 -4.5738 39 1 6.4110 0.0465 -5.3109 40 1 8.5473 1.2857 -5.4085 41 1 8.6954 -0.1296 -4.3397 42 1 10.6394 0.9983 -3.1225 43 1 10.4630 2.3238 -4.2974 44 1 10.0589 3.9162 -2.4402 45 1 10.2354 2.5908 -1.2653 46 1 12.5460 2.6546 -2.8877 47 1 15.4942 5.1313 -0.5344 48 1 8.4082 1.8153 -1.1644 49 1 8.7664 0.2001 -1.8244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714211021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:58 Heat of formation + Delta-G solvation = -136.400991 kcal Electronic energy + Delta-G solvation = -28805.692416 eV Core-core repulsion = 24700.541702 eV Total energy + Delta-G solvation = -4105.150714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37151 -39.06821 -38.22300 -37.12161 -37.06813 -35.79801 -35.00488 -34.00597 -33.53865 -32.55094 -29.75683 -28.32911 -25.89917 -25.60985 -24.92976 -23.82742 -22.30490 -21.49156 -20.46887 -20.15888 -19.65298 -19.03432 -17.94106 -17.74957 -17.19331 -16.91825 -16.69076 -16.56468 -16.12598 -15.91877 -15.56261 -15.19328 -15.04002 -14.89263 -14.79754 -14.55121 -14.24542 -14.09337 -14.02347 -13.72144 -13.66357 -13.36453 -13.26071 -13.18219 -13.12005 -13.09601 -12.86621 -12.62449 -12.36418 -12.33137 -12.05648 -11.92107 -11.85914 -11.74592 -11.59896 -11.57132 -11.19589 -10.98842 -10.96090 -10.52692 -9.65711 -9.34577 -8.06227 -5.41499 -0.77997 1.35098 1.41253 1.48760 1.49720 1.59149 2.01340 2.46344 2.82198 3.20032 3.24086 3.32867 3.49713 3.72296 3.83788 3.87959 3.93041 3.97772 4.12928 4.16018 4.27102 4.33513 4.38126 4.41682 4.46309 4.51781 4.59463 4.69811 4.72840 4.75761 4.88252 4.88395 4.91015 4.93806 5.06306 5.16013 5.18645 5.23926 5.31694 5.38225 5.52314 5.55143 5.70912 5.84680 6.17540 6.38015 7.03935 7.06928 7.78558 8.01122 9.15617 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002036 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.233694 B =13750.561931 C =14866.420899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.599 4.599 3 S 2.609 3.391 4 O -0.993 6.993 5 O -1.001 7.001 6 N -1.119 6.119 7 C 0.093 3.907 8 C 0.500 3.500 9 O -0.585 6.585 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.088 4.088 15 H 0.058 0.942 16 C -0.109 4.109 17 C 0.151 3.849 18 N -0.757 5.757 19 C -0.245 4.245 20 H 0.045 0.955 21 C -0.069 4.069 22 N -0.985 5.985 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.246 1.246 27 C 0.114 3.886 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.158 0.842 33 H 0.421 0.579 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.009 0.991 45 H 0.016 0.984 46 H 0.369 0.631 47 H 0.259 0.741 48 H 0.057 0.943 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.378 -23.356 -10.087 40.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.733 4.733 3 S 2.706 3.294 4 O -0.983 6.983 5 O -0.992 6.992 6 N -0.879 5.879 7 C -0.036 4.036 8 C 0.288 3.712 9 O -0.464 6.464 10 N -0.338 5.338 11 C -0.028 4.028 12 C -0.171 4.171 13 C -0.149 4.149 14 C -0.108 4.108 15 H 0.076 0.924 16 C -0.147 4.147 17 C 0.025 3.975 18 N -0.403 5.403 19 C -0.376 4.376 20 H 0.063 0.937 21 C -0.260 4.260 22 N -0.636 5.636 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.170 1.170 27 C -0.009 4.009 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.188 0.812 32 H 0.176 0.824 33 H 0.257 0.743 34 H 0.167 0.833 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.034 0.966 46 H 0.203 0.797 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -31.733 -22.087 -9.606 39.838 hybrid contribution 1.737 0.176 0.469 1.807 sum -29.997 -21.911 -9.137 38.254 Atomic orbital electron populations 1.21725 0.90222 1.06702 1.03633 1.30259 1.07275 1.20885 1.14885 1.04971 0.72303 0.79375 0.72731 1.93555 1.83565 1.74645 1.46493 1.93565 1.83296 1.75665 1.46668 1.55403 1.25920 1.78689 1.27916 1.21503 0.88735 1.02402 0.90926 1.21160 0.89783 0.78706 0.81594 1.90733 1.78295 1.41327 1.36090 1.48233 1.07637 1.52860 1.25050 1.22371 1.01490 0.94911 0.83985 1.22025 0.95133 1.02005 0.97985 1.21580 0.96761 0.99662 0.96885 1.21353 0.94300 0.99557 0.95596 0.92367 1.21675 0.95621 0.98934 0.98467 1.20852 0.82707 0.96599 0.97377 1.42684 1.03877 1.51893 1.41894 1.19028 0.91300 1.16441 1.10786 0.93655 1.25689 0.97886 1.00884 1.01582 1.69921 1.10489 1.41827 1.41317 0.85239 0.77625 0.79517 0.78341 1.20070 1.21941 1.17020 1.21643 0.80505 1.00713 0.98058 0.87402 0.91485 0.90654 0.81184 0.82437 0.74298 0.83316 0.85578 0.88434 0.86384 0.92275 0.87401 0.91003 0.90238 0.90569 0.90643 0.97247 0.96611 0.79737 0.93186 0.92450 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.92 71.98 0.71 0.07 16 2 C -0.60 -1.61 6.79 71.98 0.49 -1.12 16 3 S 2.61 37.97 5.46 -56.49 -0.31 37.66 16 4 O -0.99 -20.74 17.49 -127.65 -2.23 -22.97 16 5 O -1.00 -24.09 18.08 -127.65 -2.31 -26.39 16 6 N -1.12 -17.03 5.82 -190.79 -1.11 -18.14 16 7 C 0.09 0.98 4.96 85.64 0.42 1.40 16 8 C 0.50 10.48 7.77 87.66 0.68 11.16 16 9 O -0.58 -19.11 15.14 -3.01 -0.05 -19.15 16 10 N -0.61 -10.36 2.97 -818.12 -2.43 -12.78 16 11 C 0.09 0.59 6.37 86.51 0.55 1.15 16 12 C -0.13 -1.06 6.10 30.82 0.19 -0.87 16 13 C -0.11 -1.45 5.16 30.62 0.16 -1.29 16 14 C -0.09 -1.92 2.34 -10.73 -0.03 -1.94 16 15 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 16 C -0.11 -3.00 4.80 30.59 0.15 -2.85 16 17 C 0.15 6.13 6.02 86.38 0.52 6.65 16 18 N -0.76 -37.38 5.41 -343.45 -1.86 -39.24 16 19 C -0.24 -14.93 10.47 84.03 0.88 -14.05 16 20 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.99 -65.67 13.97 21.65 0.30 -65.37 16 23 Si 0.97 46.28 27.74 68.60 1.90 48.18 16 24 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 27 C 0.11 2.66 5.32 86.35 0.46 3.12 16 28 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.17 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.42 8.31 7.67 -96.74 -0.74 7.57 16 34 H 0.15 -0.13 7.93 -2.38 -0.02 -0.15 16 35 H 0.13 0.93 7.26 -2.39 -0.02 0.91 16 36 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.12 -0.06 5.93 -2.39 -0.01 -0.07 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.02 0.69 6.70 -2.39 -0.02 0.67 16 46 H 0.37 16.73 5.53 -92.71 -0.51 16.21 16 47 H 0.26 16.30 8.31 -92.71 -0.77 15.52 16 48 H 0.06 1.87 5.72 -2.38 -0.01 1.85 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -97.29 399.55 -2.79 -100.08 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.36 Total: 20.48 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 5.65 Total: -2.36 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -5.09 Total: -135.53 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: -4.59 Total: -68.52 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Atomic # 16 Polarization: 37.97 SS G_CDS: -0.31 Total: 37.66 kcal Total: -97.29 -2.79 -100.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714211021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.326 kcal (2) G-P(sol) polarization free energy of solvation -97.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds