Wall clock time and date at job start Wed Apr 1 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81402 * 109.46936 * 2 1 4 4 O 1.42099 * 110.54545 * 68.37895 * 3 2 1 5 5 O 1.42101 * 110.54381 * 291.62506 * 3 2 1 6 6 N 1.65599 * 104.45009 * 180.02562 * 3 2 1 7 7 C 1.46495 * 120.00158 * 270.00003 * 6 3 2 8 8 C 1.46506 * 119.99905 * 89.99751 * 6 3 2 9 9 C 1.50700 * 109.47000 * 95.00401 * 8 6 3 10 10 O 1.21278 * 120.00135 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99626 * 179.97438 * 9 8 6 12 12 C 1.46508 * 119.99573 * 174.90218 * 11 9 8 13 13 C 1.53005 * 110.01420 * 65.18236 * 12 11 9 14 14 N 1.46496 * 109.47139 * 55.14242 * 13 12 11 15 15 C 1.36933 * 120.00010 * 174.90405 * 14 13 12 16 16 H 1.08007 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99689 * 359.71666 * 17 15 14 19 19 Si 1.86802 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47282 * 119.99706 * 19 17 15 22 22 H 1.48506 * 109.46558 * 239.99652 * 19 17 15 23 23 C 1.54266 * 110.07300 * 186.59994 * 12 11 9 24 24 C 1.54893 * 104.19538 * 95.69676 * 23 12 11 25 25 C 1.54885 * 102.74622 * 37.94395 * 24 23 12 26 26 C 1.53873 * 110.03335 * 303.79171 * 12 11 9 27 27 H 1.09002 * 109.47243 * 60.00039 * 1 2 3 28 28 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46937 * 299.99761 * 1 2 3 30 30 H 1.08997 * 109.47288 * 240.00390 * 2 1 3 31 31 H 1.09002 * 109.47243 * 119.99961 * 2 1 3 32 32 H 1.09006 * 109.47320 * 270.00163 * 7 6 3 33 33 H 1.09004 * 109.47447 * 29.99748 * 7 6 3 34 34 H 1.09004 * 109.47706 * 149.99519 * 7 6 3 35 35 H 1.08998 * 109.47088 * 334.99864 * 8 6 3 36 36 H 1.09007 * 109.46924 * 215.00152 * 8 6 3 37 37 H 0.96993 * 120.00337 * 354.90755 * 11 9 8 38 38 H 1.08996 * 109.46874 * 295.13660 * 13 12 11 39 39 H 1.09003 * 109.46499 * 175.14209 * 13 12 11 40 40 H 0.97002 * 119.99924 * 354.90407 * 14 13 12 41 41 H 0.97004 * 119.99799 * 179.97438 * 18 17 15 42 42 H 1.08998 * 110.48484 * 214.37615 * 23 12 11 43 43 H 1.09002 * 110.48368 * 337.02001 * 23 12 11 44 44 H 1.08996 * 110.75414 * 279.62819 * 24 23 12 45 45 H 1.08993 * 110.75453 * 156.25906 * 24 23 12 46 46 H 1.09001 * 110.48547 * 203.37828 * 25 24 23 47 47 H 1.08995 * 110.48796 * 80.73505 * 25 24 23 48 48 H 1.09007 * 110.03098 * 359.95284 * 26 12 11 49 49 H 1.09002 * 110.03263 * 121.38122 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8386 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5145 1.5011 1.2676 8 6 4.5134 1.5015 -1.2698 9 6 4.9942 2.8801 -1.6429 10 8 4.7513 3.8233 -0.9202 11 7 5.6941 3.0649 -2.7798 12 6 6.0651 4.4186 -3.1997 13 6 7.0392 5.0312 -2.1912 14 7 8.1933 4.1442 -2.0263 15 6 9.2509 4.5341 -1.2487 16 1 9.2340 5.4954 -0.7567 17 6 10.3448 3.6938 -1.0929 18 7 10.3630 2.5200 -1.6879 19 14 11.7872 4.2254 -0.0316 20 1 11.5199 5.5753 0.5268 21 1 11.9681 3.2567 1.0792 22 1 13.0206 4.2673 -0.8578 23 6 6.7096 4.3804 -4.6007 24 6 5.5394 4.6944 -5.5658 25 6 4.7314 5.7620 -4.7871 26 6 4.8074 5.2971 -3.3181 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.7855 2.5090 1.5824 33 1 3.8831 1.0407 2.0276 34 1 5.4183 0.9059 1.1369 35 1 3.8526 1.1236 -2.0499 36 1 5.3691 0.8345 -1.1640 37 1 5.9521 2.3017 -3.3200 38 1 6.5374 5.1569 -1.2318 39 1 7.3760 6.0019 -2.5551 40 1 8.2084 3.2806 -2.4678 41 1 11.1276 1.9329 -1.5793 42 1 7.4869 5.1399 -4.6839 43 1 7.1182 3.3909 -4.8058 44 1 4.9348 3.8048 -5.7420 45 1 5.9124 5.1017 -6.5055 46 1 3.6963 5.7808 -5.1282 47 1 5.1893 6.7446 -4.9003 48 1 3.9208 4.7160 -3.0640 49 1 4.8909 6.1598 -2.6572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715101898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:59 Heat of formation + Delta-G solvation = -91.960621 kcal Electronic energy + Delta-G solvation = -30721.997083 eV Core-core repulsion = 26618.773448 eV Total energy + Delta-G solvation = -4103.223635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.01482 -37.79193 -37.18875 -36.00573 -35.55767 -34.24359 -33.47630 -33.07054 -31.03127 -29.06040 -28.48868 -27.53880 -25.34379 -24.41402 -24.07382 -22.14050 -20.95134 -20.43162 -18.90383 -18.83364 -17.83258 -17.16027 -17.04867 -16.57351 -16.25678 -15.83757 -15.14923 -14.95274 -14.55683 -14.41103 -14.26005 -13.99275 -13.81805 -13.52480 -13.15739 -13.09585 -12.91889 -12.85211 -12.78338 -12.61909 -12.27512 -12.13134 -11.92395 -11.84303 -11.72526 -11.62500 -11.31510 -11.07573 -10.87399 -10.81718 -10.80736 -10.79700 -10.61665 -10.38964 -10.31303 -9.97345 -9.84415 -9.63937 -8.91888 -8.67932 -8.44550 -6.81000 -5.72518 -2.97634 0.05489 2.47132 3.11034 3.45444 3.51970 3.53982 3.57042 3.78417 3.92990 4.24891 4.47230 4.56790 4.63204 4.78125 4.81159 4.94067 5.06989 5.11618 5.17629 5.21348 5.30137 5.36219 5.51332 5.56960 5.61278 5.65260 5.72860 5.79491 5.84010 5.88910 5.99468 6.06246 6.07720 6.12335 6.27392 6.31365 6.39292 6.50882 6.58883 6.64910 6.68084 7.01867 7.23602 7.76816 7.99447 8.47726 8.73859 9.59342 10.18604 10.55158 11.50911 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010684 B = 0.003734 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.018554 B = 7496.776879 C = 9341.332962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.638 4.638 3 S 2.609 3.391 4 O -0.948 6.948 5 O -0.946 6.946 6 N -0.982 5.982 7 C 0.096 3.904 8 C 0.105 3.895 9 C 0.503 3.497 10 O -0.520 6.520 11 N -0.711 5.711 12 C 0.171 3.829 13 C 0.146 3.854 14 N -0.726 5.726 15 C -0.226 4.226 16 H 0.068 0.932 17 C -0.017 4.017 18 N -0.937 5.937 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.119 4.119 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.395 0.605 38 H 0.038 0.962 39 H 0.024 0.976 40 H 0.381 0.619 41 H 0.252 0.748 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.441 -8.050 -3.274 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.767 4.767 3 S 2.701 3.299 4 O -0.938 6.938 5 O -0.936 6.936 6 N -0.819 5.819 7 C -0.049 4.049 8 C -0.025 4.025 9 C 0.287 3.713 10 O -0.394 6.394 11 N -0.364 5.364 12 C 0.085 3.915 13 C 0.017 3.983 14 N -0.369 5.369 15 C -0.358 4.358 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.587 5.587 19 Si 0.736 3.264 20 H -0.207 1.207 21 H -0.221 1.221 22 H -0.221 1.221 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.158 4.158 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.229 0.771 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.215 0.785 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.999 -6.449 -2.594 20.230 hybrid contribution 1.370 -1.259 0.240 1.876 sum -17.629 -7.708 -2.355 19.384 Atomic orbital electron populations 1.21499 0.90589 1.04938 1.03526 1.30631 1.07155 1.27357 1.11536 1.05273 0.72887 0.77170 0.74600 1.93595 1.83061 1.71894 1.45259 1.93603 1.83059 1.71862 1.45123 1.57020 1.24215 1.89458 1.11176 1.21523 0.97107 1.03581 0.82731 1.21166 0.99167 0.96447 0.85728 1.20760 0.78327 0.91214 0.81010 1.90675 1.56205 1.42643 1.49920 1.45996 1.56520 1.08899 1.24952 1.21225 0.94016 0.81766 0.94525 1.21157 0.87774 0.93006 0.96327 1.42207 1.16506 1.19234 1.59000 1.19304 0.94922 1.00725 1.20834 0.91387 1.24655 0.98606 0.96712 1.01271 1.69654 1.31020 1.09668 1.48384 0.86143 0.82840 0.77596 0.79835 1.20665 1.22058 1.22060 1.22578 0.97506 1.02974 0.92370 1.22527 0.96994 0.98738 0.97967 1.22380 0.99689 0.98736 0.95392 1.22427 0.97569 0.99787 0.96011 0.90914 0.90070 0.90978 0.85091 0.85096 0.91306 0.91359 0.90635 0.87741 0.87046 0.77071 0.94424 0.95777 0.78515 0.93867 0.89752 0.91038 0.91795 0.91779 0.92069 0.91727 0.91055 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.92 37.16 0.37 -0.60 16 2 C -0.64 -4.45 6.90 37.16 0.26 -4.19 16 3 S 2.61 31.65 5.32 -107.50 -0.57 31.08 16 4 O -0.95 -14.68 17.09 -57.54 -0.98 -15.66 16 5 O -0.95 -14.30 16.98 -57.54 -0.98 -15.27 16 6 N -0.98 -12.08 2.61 -123.04 -0.32 -12.40 16 7 C 0.10 1.14 10.22 59.84 0.61 1.75 16 8 C 0.10 1.25 5.76 -5.19 -0.03 1.22 16 9 C 0.50 8.48 6.94 -10.99 -0.08 8.41 16 10 O -0.52 -10.84 13.69 5.56 0.08 -10.77 16 11 N -0.71 -11.12 4.50 -46.57 -0.21 -11.33 16 12 C 0.17 2.90 0.57 -130.69 -0.07 2.82 16 13 C 0.15 3.16 4.64 -4.04 -0.02 3.14 16 14 N -0.73 -18.28 5.27 -59.91 -0.32 -18.59 16 15 C -0.23 -6.43 9.99 -15.06 -0.15 -6.58 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 18 N -0.94 -27.69 13.06 55.49 0.72 -26.97 16 19 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 C -0.12 -1.74 5.74 -25.07 -0.14 -1.88 16 24 C -0.12 -1.52 6.91 -24.74 -0.17 -1.69 16 25 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 26 C -0.12 -1.91 5.22 -25.61 -0.13 -2.04 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 34 H 0.07 0.80 7.94 -51.93 -0.41 0.38 16 35 H 0.10 0.91 7.61 -51.93 -0.39 0.52 16 36 H 0.11 1.11 7.96 -51.93 -0.41 0.69 16 37 H 0.40 5.07 8.23 -40.82 -0.34 4.74 16 38 H 0.04 0.92 6.56 -51.93 -0.34 0.58 16 39 H 0.02 0.53 8.04 -51.93 -0.42 0.12 16 40 H 0.38 9.72 7.19 -40.82 -0.29 9.43 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 43 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.23 6.99 -51.93 -0.36 0.87 16 49 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -38.20 403.57 -9.70 -47.90 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.35 Total: 10.27 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.17 Total: -2.02 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -0.12 Total: -69.30 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.88 Total: -41.70 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 31.65 SS G_CDS: -0.57 Total: 31.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.20 -9.70 -47.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715101898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.059 kcal (2) G-P(sol) polarization free energy of solvation -38.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds