Wall clock time and date at job start Wed Apr 1 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81402 * 109.46936 * 2 1 4 4 O 1.42099 * 110.54545 * 68.37895 * 3 2 1 5 5 O 1.42101 * 110.54381 * 291.62506 * 3 2 1 6 6 N 1.65599 * 104.45009 * 180.02562 * 3 2 1 7 7 C 1.46495 * 120.00158 * 270.00003 * 6 3 2 8 8 C 1.46506 * 119.99905 * 89.99751 * 6 3 2 9 9 C 1.50700 * 109.47000 * 95.00401 * 8 6 3 10 10 O 1.21278 * 120.00135 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99626 * 179.97438 * 9 8 6 12 12 C 1.46508 * 119.99573 * 174.90218 * 11 9 8 13 13 C 1.53005 * 110.01420 * 65.18236 * 12 11 9 14 14 N 1.46496 * 109.47139 * 55.14242 * 13 12 11 15 15 C 1.36933 * 120.00010 * 174.90405 * 14 13 12 16 16 H 1.08007 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99689 * 359.71666 * 17 15 14 19 19 Si 1.86802 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47282 * 119.99706 * 19 17 15 22 22 H 1.48506 * 109.46558 * 239.99652 * 19 17 15 23 23 C 1.54266 * 110.07300 * 186.59994 * 12 11 9 24 24 C 1.54893 * 104.19538 * 95.69676 * 23 12 11 25 25 C 1.54885 * 102.74622 * 37.94395 * 24 23 12 26 26 C 1.53873 * 110.03335 * 303.79171 * 12 11 9 27 27 H 1.09002 * 109.47243 * 60.00039 * 1 2 3 28 28 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46937 * 299.99761 * 1 2 3 30 30 H 1.08997 * 109.47288 * 240.00390 * 2 1 3 31 31 H 1.09002 * 109.47243 * 119.99961 * 2 1 3 32 32 H 1.09006 * 109.47320 * 270.00163 * 7 6 3 33 33 H 1.09004 * 109.47447 * 29.99748 * 7 6 3 34 34 H 1.09004 * 109.47706 * 149.99519 * 7 6 3 35 35 H 1.08998 * 109.47088 * 334.99864 * 8 6 3 36 36 H 1.09007 * 109.46924 * 215.00152 * 8 6 3 37 37 H 0.96993 * 120.00337 * 354.90755 * 11 9 8 38 38 H 1.08996 * 109.46874 * 295.13660 * 13 12 11 39 39 H 1.09003 * 109.46499 * 175.14209 * 13 12 11 40 40 H 0.97002 * 119.99924 * 354.90407 * 14 13 12 41 41 H 0.97004 * 119.99799 * 179.97438 * 18 17 15 42 42 H 1.08998 * 110.48484 * 214.37615 * 23 12 11 43 43 H 1.09002 * 110.48368 * 337.02001 * 23 12 11 44 44 H 1.08996 * 110.75414 * 279.62819 * 24 23 12 45 45 H 1.08993 * 110.75453 * 156.25906 * 24 23 12 46 46 H 1.09001 * 110.48547 * 203.37828 * 25 24 23 47 47 H 1.08995 * 110.48796 * 80.73505 * 25 24 23 48 48 H 1.09007 * 110.03098 * 359.95284 * 26 12 11 49 49 H 1.09002 * 110.03263 * 121.38122 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8386 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5145 1.5011 1.2676 8 6 4.5134 1.5015 -1.2698 9 6 4.9942 2.8801 -1.6429 10 8 4.7513 3.8233 -0.9202 11 7 5.6941 3.0649 -2.7798 12 6 6.0651 4.4186 -3.1997 13 6 7.0392 5.0312 -2.1912 14 7 8.1933 4.1442 -2.0263 15 6 9.2509 4.5341 -1.2487 16 1 9.2340 5.4954 -0.7567 17 6 10.3448 3.6938 -1.0929 18 7 10.3630 2.5200 -1.6879 19 14 11.7872 4.2254 -0.0316 20 1 11.5199 5.5753 0.5268 21 1 11.9681 3.2567 1.0792 22 1 13.0206 4.2673 -0.8578 23 6 6.7096 4.3804 -4.6007 24 6 5.5394 4.6944 -5.5658 25 6 4.7314 5.7620 -4.7871 26 6 4.8074 5.2971 -3.3181 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.7855 2.5090 1.5824 33 1 3.8831 1.0407 2.0276 34 1 5.4183 0.9059 1.1369 35 1 3.8526 1.1236 -2.0499 36 1 5.3691 0.8345 -1.1640 37 1 5.9521 2.3017 -3.3200 38 1 6.5374 5.1569 -1.2318 39 1 7.3760 6.0019 -2.5551 40 1 8.2084 3.2806 -2.4678 41 1 11.1276 1.9329 -1.5793 42 1 7.4869 5.1399 -4.6839 43 1 7.1182 3.3909 -4.8058 44 1 4.9348 3.8048 -5.7420 45 1 5.9124 5.1017 -6.5055 46 1 3.6963 5.7808 -5.1282 47 1 5.1893 6.7446 -4.9003 48 1 3.9208 4.7160 -3.0640 49 1 4.8909 6.1598 -2.6572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715101898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:57 Heat of formation + Delta-G solvation = -122.298433 kcal Electronic energy + Delta-G solvation = -30723.312629 eV Core-core repulsion = 26618.773448 eV Total energy + Delta-G solvation = -4104.539181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.35103 -39.04556 -38.22350 -37.03557 -36.60398 -36.16258 -34.47753 -34.03291 -33.00438 -30.35496 -29.70894 -28.88702 -26.50459 -26.00924 -24.74755 -23.98946 -22.18572 -21.56143 -20.29022 -19.86026 -19.12722 -18.78288 -18.26641 -17.58365 -17.27568 -17.11083 -16.50975 -16.21047 -15.98554 -15.61575 -15.42212 -15.20398 -15.02073 -14.98633 -14.58297 -14.22454 -14.13122 -13.99075 -13.88257 -13.52639 -13.41164 -13.28454 -13.19964 -13.18173 -12.83316 -12.74683 -12.61349 -12.42152 -12.39922 -12.23079 -12.15337 -11.99036 -11.89178 -11.74534 -11.70988 -11.56418 -11.39965 -11.13177 -10.85868 -9.91538 -9.84653 -8.93558 -7.94710 -5.20308 -0.81104 1.45009 1.45705 1.55572 1.56105 1.83616 2.36401 2.55756 2.95737 3.09983 3.37413 3.54037 3.56444 3.73168 3.78163 3.87450 3.89702 4.04361 4.18887 4.25287 4.38090 4.41836 4.46800 4.54941 4.57954 4.61809 4.70560 4.71852 4.82416 4.82925 4.89391 4.92254 4.94606 5.04626 5.09574 5.11908 5.13007 5.21126 5.27112 5.35403 5.41052 5.47771 5.50899 5.81755 6.28401 6.75960 7.36210 7.48441 8.09154 8.41446 9.28109 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010684 B = 0.003734 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.018554 B = 7496.776879 C = 9341.332962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.596 4.596 3 S 2.592 3.408 4 O -0.998 6.998 5 O -0.988 6.988 6 N -0.986 5.986 7 C 0.093 3.907 8 C 0.104 3.896 9 C 0.487 3.513 10 O -0.571 6.571 11 N -0.705 5.705 12 C 0.173 3.827 13 C 0.151 3.849 14 N -0.725 5.725 15 C -0.246 4.246 16 H 0.058 0.942 17 C -0.063 4.063 18 N -0.958 5.958 19 Si 0.966 3.034 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.023 0.977 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.411 0.589 38 H 0.003 0.997 39 H 0.017 0.983 40 H 0.380 0.620 41 H 0.252 0.748 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.052 -10.883 -4.711 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.731 4.731 3 S 2.690 3.310 4 O -0.988 6.988 5 O -0.978 6.978 6 N -0.821 5.821 7 C -0.052 4.052 8 C -0.025 4.025 9 C 0.272 3.728 10 O -0.450 6.450 11 N -0.358 5.358 12 C 0.086 3.914 13 C 0.023 3.977 14 N -0.368 5.368 15 C -0.378 4.378 16 H 0.076 0.924 17 C -0.256 4.256 18 N -0.609 5.609 19 Si 0.796 3.204 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.215 1.215 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.156 4.156 26 C -0.153 4.153 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.183 0.817 31 H 0.177 0.823 32 H 0.042 0.958 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.247 0.753 38 H 0.021 0.979 39 H 0.035 0.965 40 H 0.213 0.787 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.593 -9.238 -4.057 22.039 hybrid contribution 1.499 -0.395 0.743 1.719 sum -18.094 -9.632 -3.314 20.765 Atomic orbital electron populations 1.21727 0.90048 1.06790 1.03548 1.30292 1.07259 1.20772 1.14736 1.05581 0.72727 0.79686 0.72957 1.93527 1.83553 1.75052 1.46698 1.93542 1.83414 1.74809 1.46062 1.56979 1.24332 1.89639 1.11178 1.21549 0.98575 1.01412 0.83646 1.21415 1.00962 0.93424 0.86689 1.21871 0.77549 0.92905 0.80444 1.90659 1.58052 1.44797 1.51449 1.45969 1.55956 1.08840 1.25057 1.21098 0.93351 0.82616 0.94290 1.21121 0.87570 0.92781 0.96209 1.42203 1.16668 1.19524 1.58450 1.19532 0.96193 1.00598 1.21438 0.92418 1.25346 1.00821 0.96890 1.02591 1.69763 1.31622 1.10271 1.49202 0.85188 0.79748 0.77263 0.78213 1.20327 1.21786 1.21516 1.22520 0.98146 1.02807 0.91560 1.22487 0.95485 0.99113 0.97715 1.22376 1.01146 0.99264 0.92827 1.22335 0.96334 0.98536 0.98111 0.90950 0.87040 0.91356 0.81688 0.82259 0.95813 0.88553 0.89084 0.83930 0.84447 0.75255 0.97914 0.96529 0.78692 0.93902 0.91531 0.90399 0.90095 0.89583 0.90285 0.91230 0.92480 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.92 71.98 0.71 -0.89 16 2 C -0.60 -5.97 6.90 71.98 0.50 -5.48 16 3 S 2.59 61.83 5.32 -56.49 -0.30 61.53 16 4 O -1.00 -32.20 17.09 -127.65 -2.18 -34.38 16 5 O -0.99 -30.19 16.98 -127.65 -2.17 -32.36 16 6 N -0.99 -23.79 2.61 -543.20 -1.42 -25.21 16 7 C 0.09 2.26 10.22 127.77 1.31 3.56 16 8 C 0.10 2.37 5.76 85.63 0.49 2.86 16 9 C 0.49 16.79 6.94 87.66 0.61 17.40 16 10 O -0.57 -25.51 13.69 -3.02 -0.04 -25.55 16 11 N -0.71 -22.12 4.50 -419.63 -1.89 -24.01 16 12 C 0.17 6.03 0.57 4.33 0.00 6.03 16 13 C 0.15 6.93 4.64 86.38 0.40 7.33 16 14 N -0.73 -37.70 5.27 -343.45 -1.81 -39.51 16 15 C -0.25 -14.30 9.99 84.04 0.84 -13.46 16 16 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 17 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 18 N -0.96 -56.52 13.06 21.65 0.28 -56.23 16 19 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 C -0.11 -3.26 5.74 31.67 0.18 -3.08 16 24 C -0.11 -2.41 6.91 31.89 0.22 -2.19 16 25 C -0.12 -2.91 6.83 31.67 0.22 -2.70 16 26 C -0.11 -3.79 5.22 31.32 0.16 -3.63 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.17 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.10 1.70 7.79 -2.39 -0.02 1.68 16 34 H 0.09 1.86 7.94 -2.38 -0.02 1.84 16 35 H 0.14 2.09 7.61 -2.39 -0.02 2.08 16 36 H 0.14 2.40 7.96 -2.38 -0.02 2.38 16 37 H 0.41 10.06 8.23 -92.71 -0.76 9.29 16 38 H 0.00 0.16 6.56 -2.39 -0.02 0.14 16 39 H 0.02 0.78 8.04 -2.39 -0.02 0.76 16 40 H 0.38 19.70 7.19 -92.71 -0.67 19.03 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.07 2.18 7.78 -2.39 -0.02 2.16 16 43 H 0.08 2.16 7.70 -2.39 -0.02 2.14 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.06 2.05 6.99 -2.38 -0.02 2.03 16 49 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16 Total: -1.00 -88.33 403.57 -1.86 -90.20 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.48 Total: 34.00 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 6.11 Total: 2.56 kcal Atomic # 7 Polarization: -140.12 SS G_CDS: -4.83 Total: -144.96 kcal Atomic # 8 Polarization: -87.90 SS G_CDS: -4.39 Total: -92.29 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 61.83 SS G_CDS: -0.30 Total: 61.53 kcal Total: -88.33 -1.86 -90.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715101898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.102 kcal (2) G-P(sol) polarization free energy of solvation -88.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds