Wall clock time and date at job start Wed Apr 1 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81396 * 109.46796 * 2 1 4 4 O 1.42098 * 110.54647 * 68.37554 * 3 2 1 5 5 O 1.42099 * 110.54483 * 291.62081 * 3 2 1 6 6 N 1.65602 * 104.44775 * 179.97438 * 3 2 1 7 7 C 1.46503 * 120.00181 * 64.99926 * 6 3 2 8 8 H 1.08999 * 109.46679 * 24.99576 * 7 6 3 9 9 C 1.53000 * 109.46793 * 265.00053 * 7 6 3 10 10 C 1.50700 * 109.47372 * 144.99964 * 7 6 3 11 11 O 1.21284 * 119.99528 * 0.02562 * 10 7 6 12 12 N 1.34771 * 120.00265 * 179.97438 * 10 7 6 13 13 C 1.46499 * 120.00156 * 180.02562 * 12 10 7 14 14 H 1.08999 * 109.47228 * 325.00264 * 13 12 10 15 15 C 1.53003 * 109.46968 * 85.00648 * 13 12 10 16 16 C 1.52997 * 109.46860 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47188 * 299.99296 * 16 15 13 18 18 H 1.08999 * 109.47091 * 300.00470 * 17 16 15 19 19 N 1.46499 * 109.47341 * 180.02562 * 17 16 15 20 20 C 1.36939 * 119.99933 * 85.27615 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.53001 * 109.46944 * 60.00112 * 17 16 15 29 29 C 1.53003 * 109.46735 * 204.99935 * 13 12 10 30 30 H 1.09005 * 109.46977 * 60.00260 * 1 2 3 31 31 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47121 * 300.00261 * 1 2 3 33 33 H 1.08999 * 109.47121 * 239.99739 * 2 1 3 34 34 H 1.08995 * 109.46641 * 119.99365 * 2 1 3 35 35 H 0.97002 * 120.00189 * 244.99823 * 6 3 2 36 36 H 1.08997 * 109.47597 * 299.99841 * 9 7 6 37 37 H 1.09005 * 109.47138 * 60.00232 * 9 7 6 38 38 H 1.08998 * 109.46784 * 179.97438 * 9 7 6 39 39 H 0.97007 * 119.99512 * 0.02562 * 12 10 7 40 40 H 1.09002 * 109.46570 * 299.99230 * 15 13 12 41 41 H 1.08993 * 109.47787 * 59.99440 * 15 13 12 42 42 H 1.09001 * 109.47132 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47488 * 59.99523 * 16 15 13 44 44 H 0.97001 * 119.99790 * 264.99588 * 19 17 16 45 45 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.46935 * 60.00262 * 28 17 16 47 47 H 1.09004 * 109.47138 * 180.02562 * 28 17 16 48 48 H 1.09000 * 109.47291 * 60.00890 * 29 13 12 49 49 H 1.08999 * 109.47531 * 300.00143 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9669 -1.1488 8 1 3.8509 1.0850 -2.0398 9 6 4.7019 -0.5217 -0.8844 10 6 5.7920 1.6543 -1.3596 11 8 6.1319 2.5550 -0.6220 12 7 6.5992 1.2674 -2.3671 13 6 7.8869 1.9353 -2.5717 14 1 7.7922 2.9918 -2.3212 15 6 8.9442 1.2908 -1.6729 16 6 10.2889 1.9887 -1.8862 17 6 10.7100 1.8480 -3.3503 18 1 10.8051 0.7915 -3.6011 19 7 11.9979 2.5157 -3.5544 20 6 13.1645 1.8465 -3.2968 21 1 13.1350 0.8279 -2.9390 22 6 14.3850 2.4772 -3.4957 23 7 14.4208 3.7187 -3.9314 24 14 15.9763 1.5645 -3.1437 25 1 15.6653 0.1929 -2.6670 26 1 16.7863 1.4846 -4.3858 27 1 16.7425 2.2903 -2.0989 28 6 9.6528 2.4924 -4.2492 29 6 8.3077 1.7940 -4.0360 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 4.2982 1.8767 0.7622 36 1 5.3185 -0.6399 0.0067 37 1 3.7439 -1.0189 -0.7319 38 1 5.2099 -0.9671 -1.7398 39 1 6.3274 0.5467 -2.9568 40 1 8.6444 1.3915 -0.6298 41 1 9.0390 0.2342 -1.9233 42 1 11.0420 1.5299 -1.2455 43 1 10.1938 3.0452 -1.6354 44 1 12.0243 3.4305 -3.8758 45 1 15.2737 4.1595 -4.0700 46 1 9.5577 3.5488 -3.9984 47 1 9.9526 2.3917 -5.2924 48 1 7.5546 2.2531 -4.6764 49 1 8.4025 0.7374 -4.2865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715184734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:07 Heat of formation + Delta-G solvation = -115.749947 kcal Electronic energy + Delta-G solvation = -28933.472573 eV Core-core repulsion = 24829.217355 eV Total energy + Delta-G solvation = -4104.255218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.38135 -38.23794 -37.52629 -36.38363 -35.91935 -34.95070 -33.76173 -33.13547 -30.99931 -30.43411 -30.02816 -27.41725 -25.14360 -24.32801 -23.44185 -22.39421 -21.24078 -20.51851 -19.89798 -19.54409 -18.57246 -17.73122 -17.02358 -16.81404 -16.39509 -16.22548 -15.56151 -15.34845 -15.06028 -14.77000 -14.33623 -13.99905 -13.86887 -13.83535 -13.61113 -13.49646 -13.32540 -12.99164 -12.81014 -12.62253 -12.52207 -12.46813 -12.32217 -12.20276 -12.10903 -12.05158 -11.83521 -11.46536 -11.15129 -11.07597 -10.84511 -10.78969 -10.69376 -10.34040 -10.17096 -10.13131 -9.82518 -9.77796 -9.58280 -9.06309 -8.86367 -6.94364 -5.75950 -3.04474 -0.25391 2.16414 2.37736 2.93820 3.31450 3.43002 3.48381 3.50818 3.66965 3.97667 4.11776 4.24950 4.36442 4.50259 4.56659 4.59058 4.72608 4.87053 4.93847 5.01021 5.01089 5.11004 5.24171 5.31545 5.38866 5.50261 5.52224 5.57904 5.65244 5.70561 5.81630 5.84895 5.99594 6.20718 6.21728 6.27311 6.44039 6.52924 6.54510 6.61622 6.70520 6.97246 7.13820 7.31251 7.70807 8.00161 8.42911 9.53870 10.12635 10.46929 11.46843 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.001796 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.331571 B =15582.287308 C =15645.149415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.635 4.635 3 S 2.611 3.389 4 O -0.952 6.952 5 O -0.953 6.953 6 N -1.101 6.101 7 C 0.125 3.875 8 H 0.118 0.882 9 C -0.176 4.176 10 C 0.512 3.488 11 O -0.525 6.525 12 N -0.720 5.720 13 C 0.144 3.856 14 H 0.089 0.911 15 C -0.122 4.122 16 C -0.132 4.132 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.726 5.726 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.427 0.573 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.399 0.601 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.375 -12.454 4.849 32.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.764 4.764 3 S 2.703 3.297 4 O -0.942 6.942 5 O -0.943 6.943 6 N -0.861 5.861 7 C 0.014 3.986 8 H 0.135 0.865 9 C -0.235 4.235 10 C 0.295 3.705 11 O -0.400 6.400 12 N -0.372 5.372 13 C 0.040 3.960 14 H 0.107 0.893 15 C -0.162 4.162 16 C -0.174 4.174 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.160 4.160 29 C -0.157 4.157 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.233 0.767 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -29.552 -11.154 5.267 32.023 hybrid contribution 1.278 -1.161 0.180 1.736 sum -28.275 -12.315 5.447 31.317 Atomic orbital electron populations 1.21519 0.90265 1.05223 1.03656 1.30651 1.07535 1.26383 1.11826 1.05065 0.72864 0.77256 0.74533 1.93627 1.82801 1.72778 1.44977 1.93620 1.83198 1.71830 1.45615 1.55427 1.25722 1.77494 1.27500 1.20722 0.94184 0.93347 0.90384 0.86465 1.22438 1.03606 0.93101 1.04363 1.20373 0.85433 0.83536 0.81113 1.90741 1.74426 1.29685 1.45123 1.46126 1.20041 1.38834 1.32170 1.21174 0.81073 0.97927 0.95790 0.89304 1.21886 0.95559 0.99717 0.99001 1.22227 0.94198 1.00205 1.00722 1.20235 0.85867 0.95866 0.91296 0.93623 1.42438 0.99698 1.15022 1.79433 1.19283 0.84371 0.96492 1.36641 0.91184 1.24746 0.97633 0.96394 1.02334 1.69675 1.24619 1.11486 1.52333 0.86140 0.84083 0.78703 0.77399 1.20614 1.21929 1.21919 1.21771 0.93345 0.99965 1.00914 1.21762 0.98180 1.01544 0.94234 0.90818 0.89847 0.90842 0.84843 0.84613 0.73563 0.90591 0.91071 0.90142 0.76734 0.92415 0.92275 0.91804 0.92480 0.78296 0.93596 0.91932 0.91321 0.91778 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.92 37.16 0.37 -0.15 16 2 C -0.63 -2.10 5.94 37.16 0.22 -1.88 16 3 S 2.61 20.16 5.44 -107.50 -0.58 19.57 16 4 O -0.95 -10.76 18.08 -57.54 -1.04 -11.80 16 5 O -0.95 -10.54 17.39 -57.54 -1.00 -11.55 16 6 N -1.10 -8.46 5.15 -5.88 -0.03 -8.49 16 7 C 0.13 0.84 3.22 -69.08 -0.22 0.62 16 8 H 0.12 0.59 7.48 -51.93 -0.39 0.20 16 9 C -0.18 -0.63 9.38 37.16 0.35 -0.28 16 10 C 0.51 5.43 7.18 -10.99 -0.08 5.35 16 11 O -0.52 -7.92 15.65 5.55 0.09 -7.83 16 12 N -0.72 -6.56 4.97 -53.80 -0.27 -6.82 16 13 C 0.14 1.75 2.45 -67.93 -0.17 1.59 16 14 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 15 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 16 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 17 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 18 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 19 N -0.73 -17.89 5.12 -53.43 -0.27 -18.16 16 20 C -0.24 -6.50 9.93 -15.06 -0.15 -6.64 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 C -0.12 -1.87 5.39 -26.70 -0.14 -2.01 16 29 C -0.12 -1.36 5.40 -26.70 -0.14 -1.50 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.13 0.16 6.78 -51.92 -0.35 -0.19 16 34 H 0.14 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.43 3.57 8.17 -34.47 -0.28 3.29 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.10 5.78 -51.93 -0.30 -0.20 16 38 H 0.08 0.17 7.56 -51.93 -0.39 -0.22 16 39 H 0.40 2.23 8.02 -40.82 -0.33 1.91 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -38.07 403.05 -10.10 -48.17 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.22 Total: 7.55 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.55 Total: -6.59 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.15 Total: -60.92 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.95 Total: -31.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 20.16 SS G_CDS: -0.58 Total: 19.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.07 -10.10 -48.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715184734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.581 kcal (2) G-P(sol) polarization free energy of solvation -38.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds