Wall clock time and date at job start Wed Apr 1 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81396 * 109.46796 * 2 1 4 4 O 1.42098 * 110.54647 * 68.37554 * 3 2 1 5 5 O 1.42099 * 110.54483 * 291.62081 * 3 2 1 6 6 N 1.65602 * 104.44775 * 179.97438 * 3 2 1 7 7 C 1.46503 * 120.00181 * 64.99926 * 6 3 2 8 8 H 1.08999 * 109.46679 * 24.99576 * 7 6 3 9 9 C 1.53000 * 109.46793 * 265.00053 * 7 6 3 10 10 C 1.50700 * 109.47372 * 144.99964 * 7 6 3 11 11 O 1.21284 * 119.99528 * 0.02562 * 10 7 6 12 12 N 1.34771 * 120.00265 * 179.97438 * 10 7 6 13 13 C 1.46499 * 120.00156 * 180.02562 * 12 10 7 14 14 H 1.08999 * 109.47228 * 325.00264 * 13 12 10 15 15 C 1.53003 * 109.46968 * 85.00648 * 13 12 10 16 16 C 1.52997 * 109.46860 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47188 * 299.99296 * 16 15 13 18 18 H 1.08999 * 109.47091 * 300.00470 * 17 16 15 19 19 N 1.46499 * 109.47341 * 180.02562 * 17 16 15 20 20 C 1.36939 * 119.99933 * 85.27615 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.53001 * 109.46944 * 60.00112 * 17 16 15 29 29 C 1.53003 * 109.46735 * 204.99935 * 13 12 10 30 30 H 1.09005 * 109.46977 * 60.00260 * 1 2 3 31 31 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47121 * 300.00261 * 1 2 3 33 33 H 1.08999 * 109.47121 * 239.99739 * 2 1 3 34 34 H 1.08995 * 109.46641 * 119.99365 * 2 1 3 35 35 H 0.97002 * 120.00189 * 244.99823 * 6 3 2 36 36 H 1.08997 * 109.47597 * 299.99841 * 9 7 6 37 37 H 1.09005 * 109.47138 * 60.00232 * 9 7 6 38 38 H 1.08998 * 109.46784 * 179.97438 * 9 7 6 39 39 H 0.97007 * 119.99512 * 0.02562 * 12 10 7 40 40 H 1.09002 * 109.46570 * 299.99230 * 15 13 12 41 41 H 1.08993 * 109.47787 * 59.99440 * 15 13 12 42 42 H 1.09001 * 109.47132 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47488 * 59.99523 * 16 15 13 44 44 H 0.97001 * 119.99790 * 264.99588 * 19 17 16 45 45 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.46935 * 60.00262 * 28 17 16 47 47 H 1.09004 * 109.47138 * 180.02562 * 28 17 16 48 48 H 1.09000 * 109.47291 * 60.00890 * 29 13 12 49 49 H 1.08999 * 109.47531 * 300.00143 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9669 -1.1488 8 1 3.8509 1.0850 -2.0398 9 6 4.7019 -0.5217 -0.8844 10 6 5.7920 1.6543 -1.3596 11 8 6.1319 2.5550 -0.6220 12 7 6.5992 1.2674 -2.3671 13 6 7.8869 1.9353 -2.5717 14 1 7.7922 2.9918 -2.3212 15 6 8.9442 1.2908 -1.6729 16 6 10.2889 1.9887 -1.8862 17 6 10.7100 1.8480 -3.3503 18 1 10.8051 0.7915 -3.6011 19 7 11.9979 2.5157 -3.5544 20 6 13.1645 1.8465 -3.2968 21 1 13.1350 0.8279 -2.9390 22 6 14.3850 2.4772 -3.4957 23 7 14.4208 3.7187 -3.9314 24 14 15.9763 1.5645 -3.1437 25 1 15.6653 0.1929 -2.6670 26 1 16.7863 1.4846 -4.3858 27 1 16.7425 2.2903 -2.0989 28 6 9.6528 2.4924 -4.2492 29 6 8.3077 1.7940 -4.0360 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 4.2982 1.8767 0.7622 36 1 5.3185 -0.6399 0.0067 37 1 3.7439 -1.0189 -0.7319 38 1 5.2099 -0.9671 -1.7398 39 1 6.3274 0.5467 -2.9568 40 1 8.6444 1.3915 -0.6298 41 1 9.0390 0.2342 -1.9233 42 1 11.0420 1.5299 -1.2455 43 1 10.1938 3.0452 -1.6354 44 1 12.0243 3.4305 -3.8758 45 1 15.2737 4.1595 -4.0700 46 1 9.5577 3.5488 -3.9984 47 1 9.9526 2.3917 -5.2924 48 1 7.5546 2.2531 -4.6764 49 1 8.4025 0.7374 -4.2865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715184734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:06 Heat of formation + Delta-G solvation = -147.683450 kcal Electronic energy + Delta-G solvation = -28934.857313 eV Core-core repulsion = 24829.217355 eV Total energy + Delta-G solvation = -4105.639958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.25806 -39.43193 -38.23926 -37.08150 -36.66984 -36.25612 -34.67867 -34.04137 -32.54430 -31.66843 -30.79949 -28.80467 -25.95770 -25.23153 -24.55788 -23.61567 -22.46134 -21.40264 -20.88139 -20.42887 -19.34410 -18.99903 -18.32862 -17.47252 -17.14365 -17.03945 -16.77320 -16.24847 -16.03281 -15.67796 -15.38223 -15.22600 -15.04203 -14.89920 -14.57659 -14.24298 -14.02352 -13.98855 -13.61408 -13.44494 -13.28529 -13.24909 -13.16451 -13.12335 -13.06800 -12.86769 -12.85257 -12.59765 -12.41019 -12.33094 -12.28243 -12.09323 -12.01005 -11.64769 -11.58454 -11.45513 -11.18973 -10.99198 -10.84198 -10.46817 -10.02800 -8.98608 -7.93091 -5.21110 -0.78555 1.46924 1.47885 1.57591 1.57772 1.61394 2.16847 2.57009 2.81112 3.19823 3.40151 3.49095 3.72428 3.78699 3.85952 3.90749 3.93654 3.95320 4.10270 4.30850 4.32373 4.39709 4.42154 4.42478 4.55664 4.61966 4.67021 4.71465 4.79673 4.87395 4.91633 5.01445 5.03933 5.14155 5.16358 5.16767 5.27405 5.29856 5.32445 5.48232 5.55134 5.56658 5.65976 5.90263 6.29894 6.58586 7.26101 7.35027 8.13406 8.35015 9.30908 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.001796 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.331571 B =15582.287308 C =15645.149415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.601 4.601 3 S 2.604 3.396 4 O -1.000 7.000 5 O -0.997 6.997 6 N -1.108 6.108 7 C 0.126 3.874 8 H 0.138 0.862 9 C -0.175 4.175 10 C 0.505 3.495 11 O -0.579 6.579 12 N -0.703 5.703 13 C 0.150 3.850 14 H 0.058 0.942 15 C -0.109 4.109 16 C -0.124 4.124 17 C 0.172 3.828 18 H 0.051 0.949 19 N -0.741 5.741 20 C -0.233 4.233 21 H 0.077 0.923 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.298 1.298 28 C -0.115 4.115 29 C -0.105 4.105 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.421 0.579 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.421 0.579 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.034 0.966 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.478 -16.627 4.157 35.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.735 4.735 3 S 2.702 3.298 4 O -0.990 6.990 5 O -0.987 6.987 6 N -0.867 5.867 7 C 0.015 3.985 8 H 0.156 0.844 9 C -0.234 4.234 10 C 0.290 3.710 11 O -0.458 6.458 12 N -0.356 5.356 13 C 0.045 3.955 14 H 0.077 0.923 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.064 3.936 18 H 0.069 0.931 19 N -0.380 5.380 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.800 3.200 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.225 1.225 28 C -0.154 4.154 29 C -0.143 4.143 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.186 0.814 34 H 0.181 0.819 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -31.696 -15.356 4.553 35.513 hybrid contribution 1.835 0.088 0.420 1.884 sum -29.862 -15.268 4.973 33.905 Atomic orbital electron populations 1.21723 0.90162 1.06755 1.03570 1.30394 1.07361 1.20829 1.14917 1.05078 0.72603 0.79399 0.72752 1.93559 1.83393 1.75599 1.46489 1.93557 1.83682 1.74702 1.46727 1.55382 1.25619 1.78083 1.27579 1.20971 0.91802 0.94839 0.90896 0.84431 1.22521 1.05512 0.90402 1.04938 1.21200 0.86693 0.82834 0.80277 1.90726 1.75836 1.32133 1.47056 1.45859 1.18537 1.38960 1.32214 1.20847 0.82148 0.96498 0.95965 0.92336 1.21737 0.93547 1.00536 0.99003 1.22035 0.96060 0.99116 0.99292 1.20506 0.84607 0.95876 0.92580 0.93065 1.42708 1.01239 1.14639 1.79369 1.19681 0.85438 0.96697 1.34722 0.90481 1.25566 1.00975 0.97337 1.03432 1.69836 1.24871 1.13165 1.54476 0.85099 0.79944 0.78166 0.76742 1.18806 1.22056 1.22539 1.21664 0.94562 0.99401 0.99761 1.21663 0.96019 1.02869 0.93770 0.90896 0.87281 0.91370 0.81429 0.81921 0.74286 0.91491 0.88016 0.87987 0.74082 0.93361 0.89934 0.94085 0.94757 0.79857 0.94219 0.93338 0.91471 0.89446 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.92 71.98 0.71 0.09 16 2 C -0.60 -1.59 5.94 71.98 0.43 -1.16 16 3 S 2.60 38.17 5.44 -56.49 -0.31 37.87 16 4 O -1.00 -23.41 18.08 -127.65 -2.31 -25.72 16 5 O -1.00 -21.86 17.39 -127.65 -2.22 -24.08 16 6 N -1.11 -16.03 5.15 -172.52 -0.89 -16.92 16 7 C 0.13 1.37 3.22 44.24 0.14 1.51 16 8 H 0.14 0.93 7.48 -2.39 -0.02 0.91 16 9 C -0.17 -0.47 9.38 71.98 0.67 0.20 16 10 C 0.50 10.02 7.18 87.66 0.63 10.65 16 11 O -0.58 -17.87 15.65 -3.04 -0.05 -17.92 16 12 N -0.70 -10.91 4.97 -442.53 -2.20 -13.11 16 13 C 0.15 3.44 2.45 44.99 0.11 3.55 16 14 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 15 C -0.11 -2.88 5.49 30.59 0.17 -2.72 16 16 C -0.12 -4.45 5.50 30.59 0.17 -4.28 16 17 C 0.17 6.50 2.77 44.99 0.12 6.62 16 18 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 19 N -0.74 -37.30 5.12 -322.94 -1.65 -38.96 16 20 C -0.23 -12.92 9.93 84.03 0.83 -12.09 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 24 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 28 C -0.12 -3.46 5.39 30.61 0.17 -3.29 16 29 C -0.10 -2.10 5.40 30.61 0.17 -1.93 16 30 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.17 -0.61 6.78 -2.39 -0.02 -0.63 16 34 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.42 7.26 8.17 -96.74 -0.79 6.47 16 36 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.10 -0.33 5.78 -2.38 -0.01 -0.35 16 38 H 0.10 -0.13 7.56 -2.39 -0.02 -0.15 16 39 H 0.42 2.81 8.02 -92.70 -0.74 2.07 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 45 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -88.76 403.05 -3.81 -92.57 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -1.29 Total: 24.99 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.79 Total: -7.08 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -4.46 Total: -129.07 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -4.58 Total: -67.72 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 38.17 SS G_CDS: -0.31 Total: 37.87 kcal Total: -88.76 -3.81 -92.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715184734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.112 kcal (2) G-P(sol) polarization free energy of solvation -88.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds