Wall clock time and date at job start Wed Apr 1 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81405 * 109.47329 * 2 1 4 4 O 1.42098 * 110.53988 * 68.37764 * 3 2 1 5 5 O 1.42097 * 110.53991 * 291.62858 * 3 2 1 6 6 N 1.65594 * 104.44911 * 180.02562 * 3 2 1 7 7 C 1.46507 * 120.00312 * 64.99999 * 6 3 2 8 8 H 1.08999 * 109.46912 * 335.00205 * 7 6 3 9 9 C 1.53000 * 109.46823 * 94.99921 * 7 6 3 10 10 C 1.50699 * 109.47326 * 215.00137 * 7 6 3 11 11 O 1.21277 * 119.99965 * 359.97438 * 10 7 6 12 12 N 1.34774 * 119.99731 * 180.02562 * 10 7 6 13 13 C 1.46504 * 119.99844 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.47225 * 175.53634 * 13 12 10 15 15 N 1.46506 * 110.53641 * 57.61931 * 14 13 12 16 16 C 1.36933 * 120.00401 * 58.62243 * 15 14 13 17 17 H 1.08006 * 119.99300 * 6.53639 * 16 15 14 18 18 C 1.38803 * 120.00453 * 186.53837 * 16 15 14 19 19 N 1.31631 * 120.00026 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00359 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47096 * 60.00021 * 20 18 16 22 22 H 1.48500 * 109.47424 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46982 * 299.99719 * 20 18 16 24 24 C 1.54889 * 110.48686 * 180.22825 * 14 13 12 25 25 C 1.54895 * 102.74848 * 156.62225 * 24 14 13 26 26 C 1.54272 * 104.19256 * 322.05887 * 25 24 14 27 27 C 1.53871 * 106.60145 * 23.60982 * 26 25 24 28 28 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46977 * 299.99788 * 1 2 3 30 30 H 1.09001 * 109.47399 * 59.99539 * 1 2 3 31 31 H 1.09006 * 109.46977 * 240.00211 * 2 1 3 32 32 H 1.09001 * 109.47399 * 120.00461 * 2 1 3 33 33 H 0.96997 * 119.99932 * 245.00121 * 6 3 2 34 34 H 1.08997 * 109.47126 * 180.02562 * 9 7 6 35 35 H 1.09007 * 109.47477 * 299.99888 * 9 7 6 36 36 H 1.08998 * 109.47420 * 59.99953 * 9 7 6 37 37 H 0.97003 * 120.00165 * 359.97438 * 12 10 7 38 38 H 1.08997 * 109.46833 * 55.53835 * 13 12 10 39 39 H 1.09005 * 109.47165 * 295.53940 * 13 12 10 40 40 H 0.96999 * 119.99526 * 238.62385 * 15 14 13 41 41 H 0.96994 * 119.99783 * 179.97438 * 19 18 16 42 42 H 1.08995 * 110.75801 * 274.93614 * 24 14 13 43 43 H 1.09001 * 110.75426 * 38.30728 * 24 14 13 44 44 H 1.08994 * 110.48349 * 203.38368 * 25 24 14 45 45 H 1.08994 * 110.48252 * 80.73645 * 25 24 14 46 46 H 1.08993 * 110.03100 * 264.32044 * 26 25 24 47 47 H 1.09006 * 110.03030 * 142.89386 * 26 25 24 48 48 H 1.08998 * 110.03485 * 240.71240 * 27 26 25 49 49 H 1.08996 * 110.03357 * 119.27899 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4666 0.9671 -1.1510 8 1 3.7805 0.3013 -1.6745 9 6 4.9287 2.0734 -2.1016 10 6 5.6618 0.1829 -0.6740 11 8 5.9187 0.1292 0.5100 12 7 6.4458 -0.4580 -1.5634 13 6 7.6080 -1.2200 -1.0999 14 6 8.2559 -1.9348 -2.2873 15 7 8.6431 -0.9696 -3.3193 16 6 9.5145 0.0427 -3.0177 17 1 9.9979 0.0693 -2.0522 18 6 9.7766 1.0346 -3.9526 19 7 9.1878 1.0019 -5.1295 20 14 10.9660 2.4151 -3.5414 21 1 12.3031 1.8433 -3.2407 22 1 11.0722 3.3384 -4.6996 23 1 10.4686 3.1606 -2.3574 24 6 9.4858 -2.7534 -1.8220 25 6 9.6204 -3.8276 -2.9298 26 6 8.1634 -4.1959 -3.2786 27 6 7.2959 -2.9924 -2.8701 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.2988 1.8763 0.7604 34 1 5.4360 1.6284 -2.9576 35 1 4.0642 2.6406 -2.4466 36 1 5.6147 2.7392 -1.5781 37 1 6.2405 -0.4148 -2.5105 38 1 7.2890 -1.9565 -0.3625 39 1 8.3302 -0.5410 -0.6463 40 1 8.2821 -1.0476 -4.2162 41 1 9.3707 1.6952 -5.7826 42 1 10.3756 -2.1252 -1.7830 43 1 9.2968 -3.2180 -0.8543 44 1 10.1544 -4.6996 -2.5526 45 1 10.1287 -3.4152 -3.8013 46 1 7.8588 -5.0819 -2.7218 47 1 8.0702 -4.3770 -4.3495 48 1 6.5702 -3.2944 -2.1150 49 1 6.7818 -2.5895 -3.7427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715300636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:22 Heat of formation + Delta-G solvation = -111.914393 kcal Electronic energy + Delta-G solvation = -30196.622999 eV Core-core repulsion = 26092.534104 eV Total energy + Delta-G solvation = -4104.088895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -39.80283 -38.34358 -37.25979 -36.12140 -35.42117 -34.22534 -33.47518 -33.35517 -30.84110 -29.83087 -28.30519 -27.88329 -25.01254 -24.37992 -23.75935 -23.06900 -20.44614 -19.74728 -19.51239 -18.87028 -18.17650 -17.28292 -16.95950 -16.53858 -16.06986 -15.83976 -15.52958 -15.05622 -14.68767 -14.60598 -14.31493 -14.10556 -13.67356 -13.52729 -13.48256 -13.32414 -12.84615 -12.78280 -12.64177 -12.42010 -12.27032 -12.15507 -11.93385 -11.90761 -11.74220 -11.55816 -11.41650 -11.15145 -10.92603 -10.89478 -10.78864 -10.70534 -10.57294 -10.37457 -10.06370 -9.93305 -9.90285 -9.71628 -9.37970 -8.95409 -8.56784 -7.08533 -5.86819 -3.16606 0.05987 2.47072 2.82833 3.38711 3.43853 3.44442 3.45999 3.69049 3.96067 4.27685 4.46710 4.50993 4.63456 4.80985 4.90389 5.06317 5.07061 5.11336 5.16576 5.20901 5.31867 5.37318 5.49696 5.56022 5.59939 5.71476 5.86865 5.90012 5.91082 6.02962 6.07665 6.14391 6.20261 6.28921 6.36807 6.39218 6.48381 6.56384 6.71767 6.75673 6.86696 6.90432 6.98487 7.64446 7.90110 8.31607 8.50204 9.43779 9.96354 10.32273 11.34723 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003323 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.494634 B = 8425.019121 C = 9919.227974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.614 3.386 4 O -0.957 6.957 5 O -0.951 6.951 6 N -1.099 6.099 7 C 0.136 3.864 8 H 0.102 0.898 9 C -0.168 4.168 10 C 0.504 3.496 11 O -0.548 6.548 12 N -0.694 5.694 13 C 0.120 3.880 14 C 0.188 3.812 15 N -0.708 5.708 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.929 5.929 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.131 4.131 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.124 4.124 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.426 0.574 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.406 0.594 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -7.445 6.216 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.766 4.766 3 S 2.705 3.295 4 O -0.948 6.948 5 O -0.941 6.941 6 N -0.860 5.860 7 C 0.025 3.975 8 H 0.120 0.880 9 C -0.228 4.228 10 C 0.287 3.713 11 O -0.427 6.427 12 N -0.344 5.344 13 C -0.006 4.006 14 C 0.096 3.904 15 N -0.349 5.349 16 C -0.367 4.367 17 H 0.086 0.914 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.171 4.171 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.162 4.162 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.242 0.758 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.824 -6.611 6.935 16.820 hybrid contribution 1.040 0.159 -0.264 1.085 sum -12.785 -6.451 6.671 15.798 Atomic orbital electron populations 1.21495 0.90435 1.05069 1.03456 1.30548 1.07280 1.26854 1.11882 1.04984 0.72865 0.77231 0.74436 1.93606 1.83022 1.73039 1.45097 1.93619 1.83306 1.71793 1.45353 1.55425 1.25532 1.77064 1.27929 1.20638 0.94377 0.95633 0.86879 0.88015 1.22285 1.03129 0.98381 0.98968 1.20479 0.84478 0.79712 0.86644 1.90656 1.72878 1.62498 1.16625 1.45748 1.27608 1.50472 1.10565 1.21861 0.86872 0.94684 0.97219 1.20632 0.91983 0.88836 0.88969 1.42397 1.53952 1.29967 1.08607 1.19013 1.17465 1.00705 0.99514 0.91373 1.24670 1.00366 0.98676 0.96424 1.69633 1.46453 1.35701 1.05926 0.86380 0.81045 0.82355 0.77065 1.21358 1.21762 1.21286 1.22886 1.00305 0.97255 0.96701 1.22196 0.95877 0.97568 0.99448 1.22054 0.95869 0.97269 1.00440 1.22386 0.97756 0.95612 1.00445 0.90018 0.90986 0.90861 0.85107 0.84700 0.73721 0.89885 0.90061 0.91245 0.75830 0.92645 0.91534 0.78041 0.93453 0.90725 0.92874 0.93059 0.91170 0.92815 0.92400 0.92042 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.92 37.15 0.37 -0.60 16 2 C -0.64 -4.73 6.68 37.15 0.25 -4.48 16 3 S 2.61 28.30 5.38 -107.50 -0.58 27.72 16 4 O -0.96 -13.28 18.08 -57.54 -1.04 -14.32 16 5 O -0.95 -12.69 17.11 -57.54 -0.98 -13.67 16 6 N -1.10 -12.88 5.15 -5.88 -0.03 -12.91 16 7 C 0.14 1.66 3.09 -69.08 -0.21 1.45 16 8 H 0.10 0.89 7.15 -51.93 -0.37 0.52 16 9 C -0.17 -2.24 9.41 37.16 0.35 -1.89 16 10 C 0.50 7.68 7.22 -10.99 -0.08 7.60 16 11 O -0.55 -9.89 15.99 5.56 0.09 -9.80 16 12 N -0.69 -10.70 5.14 -60.29 -0.31 -11.01 16 13 C 0.12 2.00 4.29 -4.04 -0.02 1.98 16 14 C 0.19 3.13 0.52 -130.16 -0.07 3.06 16 15 N -0.71 -14.72 4.70 -45.70 -0.21 -14.93 16 16 C -0.24 -5.74 8.59 -15.06 -0.13 -5.87 16 17 H 0.07 1.68 7.13 -52.48 -0.37 1.31 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 19 N -0.93 -25.38 13.07 55.49 0.73 -24.65 16 20 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 C -0.13 -2.10 5.90 -24.74 -0.15 -2.25 16 25 C -0.11 -1.66 6.79 -25.07 -0.17 -1.83 16 26 C -0.12 -1.56 6.80 -25.61 -0.17 -1.73 16 27 C -0.12 -1.72 5.70 -25.61 -0.15 -1.86 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.13 0.76 7.44 -51.92 -0.39 0.37 16 32 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.43 5.21 8.17 -34.46 -0.28 4.93 16 34 H 0.08 1.13 7.56 -51.93 -0.39 0.74 16 35 H 0.08 1.04 7.42 -51.92 -0.39 0.66 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 6.04 7.49 -40.82 -0.31 5.73 16 38 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 40 H 0.38 8.64 7.50 -40.82 -0.31 8.34 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.07 1.37 7.20 -51.93 -0.37 0.99 16 43 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.77 7.80 -51.93 -0.40 0.36 16 49 H 0.07 0.92 7.76 -51.93 -0.40 0.52 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -32.21 403.75 -9.71 -41.92 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -8.15 Total: 15.90 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.27 Total: -6.65 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.17 Total: -63.51 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -1.94 Total: -37.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 28.30 SS G_CDS: -0.58 Total: 27.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.21 -9.71 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715300636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.994 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds