Wall clock time and date at job start Wed Apr 1 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81405 * 109.47329 * 2 1 4 4 O 1.42098 * 110.53988 * 68.37764 * 3 2 1 5 5 O 1.42097 * 110.53991 * 291.62858 * 3 2 1 6 6 N 1.65594 * 104.44911 * 180.02562 * 3 2 1 7 7 C 1.46507 * 120.00312 * 64.99999 * 6 3 2 8 8 H 1.08999 * 109.46912 * 335.00205 * 7 6 3 9 9 C 1.53000 * 109.46823 * 94.99921 * 7 6 3 10 10 C 1.50699 * 109.47326 * 215.00137 * 7 6 3 11 11 O 1.21277 * 119.99965 * 359.97438 * 10 7 6 12 12 N 1.34774 * 119.99731 * 180.02562 * 10 7 6 13 13 C 1.46504 * 119.99844 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.47225 * 175.53634 * 13 12 10 15 15 N 1.46506 * 110.53641 * 57.61931 * 14 13 12 16 16 C 1.36933 * 120.00401 * 58.62243 * 15 14 13 17 17 H 1.08006 * 119.99300 * 6.53639 * 16 15 14 18 18 C 1.38803 * 120.00453 * 186.53837 * 16 15 14 19 19 N 1.31631 * 120.00026 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00359 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47096 * 60.00021 * 20 18 16 22 22 H 1.48500 * 109.47424 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46982 * 299.99719 * 20 18 16 24 24 C 1.54889 * 110.48686 * 180.22825 * 14 13 12 25 25 C 1.54895 * 102.74848 * 156.62225 * 24 14 13 26 26 C 1.54272 * 104.19256 * 322.05887 * 25 24 14 27 27 C 1.53871 * 106.60145 * 23.60982 * 26 25 24 28 28 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46977 * 299.99788 * 1 2 3 30 30 H 1.09001 * 109.47399 * 59.99539 * 1 2 3 31 31 H 1.09006 * 109.46977 * 240.00211 * 2 1 3 32 32 H 1.09001 * 109.47399 * 120.00461 * 2 1 3 33 33 H 0.96997 * 119.99932 * 245.00121 * 6 3 2 34 34 H 1.08997 * 109.47126 * 180.02562 * 9 7 6 35 35 H 1.09007 * 109.47477 * 299.99888 * 9 7 6 36 36 H 1.08998 * 109.47420 * 59.99953 * 9 7 6 37 37 H 0.97003 * 120.00165 * 359.97438 * 12 10 7 38 38 H 1.08997 * 109.46833 * 55.53835 * 13 12 10 39 39 H 1.09005 * 109.47165 * 295.53940 * 13 12 10 40 40 H 0.96999 * 119.99526 * 238.62385 * 15 14 13 41 41 H 0.96994 * 119.99783 * 179.97438 * 19 18 16 42 42 H 1.08995 * 110.75801 * 274.93614 * 24 14 13 43 43 H 1.09001 * 110.75426 * 38.30728 * 24 14 13 44 44 H 1.08994 * 110.48349 * 203.38368 * 25 24 14 45 45 H 1.08994 * 110.48252 * 80.73645 * 25 24 14 46 46 H 1.08993 * 110.03100 * 264.32044 * 26 25 24 47 47 H 1.09006 * 110.03030 * 142.89386 * 26 25 24 48 48 H 1.08998 * 110.03485 * 240.71240 * 27 26 25 49 49 H 1.08996 * 110.03357 * 119.27899 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4666 0.9671 -1.1510 8 1 3.7805 0.3013 -1.6745 9 6 4.9287 2.0734 -2.1016 10 6 5.6618 0.1829 -0.6740 11 8 5.9187 0.1292 0.5100 12 7 6.4458 -0.4580 -1.5634 13 6 7.6080 -1.2200 -1.0999 14 6 8.2559 -1.9348 -2.2873 15 7 8.6431 -0.9696 -3.3193 16 6 9.5145 0.0427 -3.0177 17 1 9.9979 0.0693 -2.0522 18 6 9.7766 1.0346 -3.9526 19 7 9.1878 1.0019 -5.1295 20 14 10.9660 2.4151 -3.5414 21 1 12.3031 1.8433 -3.2407 22 1 11.0722 3.3384 -4.6996 23 1 10.4686 3.1606 -2.3574 24 6 9.4858 -2.7534 -1.8220 25 6 9.6204 -3.8276 -2.9298 26 6 8.1634 -4.1959 -3.2786 27 6 7.2959 -2.9924 -2.8701 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.2988 1.8763 0.7604 34 1 5.4360 1.6284 -2.9576 35 1 4.0642 2.6406 -2.4466 36 1 5.6147 2.7392 -1.5781 37 1 6.2405 -0.4148 -2.5105 38 1 7.2890 -1.9565 -0.3625 39 1 8.3302 -0.5410 -0.6463 40 1 8.2821 -1.0476 -4.2162 41 1 9.3707 1.6952 -5.7826 42 1 10.3756 -2.1252 -1.7830 43 1 9.2968 -3.2180 -0.8543 44 1 10.1544 -4.6996 -2.5526 45 1 10.1287 -3.4152 -3.8013 46 1 7.8588 -5.0819 -2.7218 47 1 8.0702 -4.3770 -4.3495 48 1 6.5702 -3.2944 -2.1150 49 1 6.7818 -2.5895 -3.7427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715300636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:20 Heat of formation + Delta-G solvation = -137.177338 kcal Electronic energy + Delta-G solvation = -30197.718483 eV Core-core repulsion = 26092.534104 eV Total energy + Delta-G solvation = -4105.184379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.05329 -39.63688 -38.22031 -37.07465 -36.45895 -35.54076 -35.08640 -34.03371 -32.39047 -31.03059 -29.49801 -29.30725 -26.37334 -25.38120 -24.95472 -24.31203 -21.65152 -20.93050 -20.39601 -20.19318 -19.20912 -18.87032 -18.23273 -17.38542 -17.19510 -17.08193 -16.63550 -16.24836 -16.06975 -15.74694 -15.58286 -15.13570 -15.11453 -14.78391 -14.68530 -14.19572 -14.01189 -13.88280 -13.55824 -13.40545 -13.34235 -13.24156 -13.12798 -13.07869 -12.88033 -12.79832 -12.70323 -12.37917 -12.37341 -12.32546 -12.24190 -11.90525 -11.70452 -11.69095 -11.55744 -11.36080 -11.13948 -10.99302 -10.81812 -10.46519 -9.89375 -8.90609 -7.87471 -5.12171 -0.76334 1.46129 1.49047 1.52082 1.56007 1.63168 2.33994 2.59077 2.80984 3.19564 3.43864 3.55477 3.72970 3.80001 3.83854 3.88561 3.94022 3.99892 4.04824 4.16479 4.27837 4.40504 4.49774 4.65759 4.71374 4.72705 4.79850 4.85221 4.85767 4.91852 4.96464 5.03261 5.10454 5.13265 5.17784 5.25027 5.27065 5.27680 5.44523 5.52019 5.59938 5.66215 5.73181 5.89282 6.36249 6.66385 7.27049 7.44753 8.18313 8.43083 9.34205 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003323 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.494634 B = 8425.019121 C = 9919.227974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.613 4.613 3 S 2.615 3.385 4 O -0.994 6.994 5 O -0.981 6.981 6 N -1.104 6.104 7 C 0.140 3.860 8 H 0.145 0.855 9 C -0.167 4.167 10 C 0.504 3.496 11 O -0.577 6.577 12 N -0.692 5.692 13 C 0.127 3.873 14 C 0.183 3.817 15 N -0.710 5.710 16 C -0.213 4.213 17 H 0.062 0.938 18 C -0.057 4.057 19 N -0.956 5.956 20 Si 0.943 3.057 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.290 1.290 24 C -0.131 4.131 25 C -0.111 4.111 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.422 0.578 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.410 0.590 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.377 0.623 41 H 0.247 0.753 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 -10.150 6.698 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.746 4.746 3 S 2.711 3.289 4 O -0.985 6.985 5 O -0.971 6.971 6 N -0.862 5.862 7 C 0.029 3.971 8 H 0.162 0.838 9 C -0.226 4.226 10 C 0.289 3.711 11 O -0.457 6.457 12 N -0.342 5.342 13 C 0.000 4.000 14 C 0.092 3.908 15 N -0.350 5.350 16 C -0.345 4.345 17 H 0.079 0.921 18 C -0.251 4.251 19 N -0.606 5.606 20 Si 0.775 3.225 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.217 1.217 24 C -0.172 4.172 25 C -0.149 4.149 26 C -0.151 4.151 27 C -0.155 4.155 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.211 0.789 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.516 -9.298 7.441 19.559 hybrid contribution 1.555 0.898 -0.319 1.824 sum -13.960 -8.400 7.122 17.781 Atomic orbital electron populations 1.21692 0.89612 1.06631 1.03835 1.30349 1.07868 1.22367 1.14048 1.04828 0.72210 0.78806 0.73019 1.93556 1.83282 1.75268 1.46356 1.93576 1.83449 1.74030 1.46091 1.55416 1.25843 1.77336 1.27580 1.20691 0.94105 0.95383 0.86907 0.83789 1.22260 1.02897 0.98571 0.98899 1.20950 0.84885 0.79209 0.86103 1.90644 1.73719 1.63447 1.17899 1.45740 1.27188 1.50478 1.10826 1.21711 0.86655 0.94321 0.97298 1.20876 0.93144 0.88712 0.88085 1.42446 1.53238 1.30028 1.09283 1.19145 1.16347 1.00563 0.98458 0.92054 1.25112 1.02393 1.00657 0.96897 1.69726 1.48216 1.36180 1.06516 0.85680 0.79936 0.80700 0.76177 1.21315 1.22539 1.21748 1.22869 0.98478 0.97295 0.98517 1.22160 0.97303 0.97679 0.97751 1.22048 0.94160 0.97822 1.01077 1.22347 0.97487 0.94686 1.00931 0.87729 0.90991 0.90457 0.82505 0.83105 0.74269 0.90328 0.89515 0.93166 0.75373 0.90905 0.95034 0.78917 0.94376 0.93800 0.90545 0.90916 0.94047 0.90102 0.92193 0.89665 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.92 71.98 0.71 -0.88 16 2 C -0.61 -6.92 6.68 71.98 0.48 -6.44 16 3 S 2.62 53.41 5.38 -56.49 -0.30 53.10 16 4 O -0.99 -27.40 18.08 -127.65 -2.31 -29.71 16 5 O -0.98 -25.28 17.11 -127.65 -2.18 -27.46 16 6 N -1.10 -24.81 5.15 -172.51 -0.89 -25.70 16 7 C 0.14 3.20 3.09 44.24 0.14 3.34 16 8 H 0.14 2.03 7.15 -2.39 -0.02 2.01 16 9 C -0.17 -4.39 9.41 71.98 0.68 -3.71 16 10 C 0.50 14.70 7.22 87.66 0.63 15.33 16 11 O -0.58 -20.31 15.99 -3.02 -0.05 -20.36 16 12 N -0.69 -20.41 5.14 -463.06 -2.38 -22.79 16 13 C 0.13 4.07 4.29 86.38 0.37 4.44 16 14 C 0.18 5.81 0.52 4.68 0.00 5.81 16 15 N -0.71 -29.41 4.70 -298.49 -1.40 -30.81 16 16 C -0.21 -10.47 8.59 84.03 0.72 -9.75 16 17 H 0.06 3.08 7.13 -2.91 -0.02 3.06 16 18 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 19 N -0.96 -53.09 13.07 21.65 0.28 -52.80 16 20 Si 0.94 44.82 29.55 68.60 2.03 46.85 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 C -0.13 -4.04 5.90 31.89 0.19 -3.85 16 25 C -0.11 -3.04 6.79 31.67 0.22 -2.83 16 26 C -0.11 -2.59 6.80 31.32 0.21 -2.38 16 27 C -0.12 -2.86 5.70 31.32 0.18 -2.68 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.16 1.03 7.44 -2.39 -0.02 1.02 16 32 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.42 10.31 8.17 -96.75 -0.79 9.52 16 34 H 0.08 2.12 7.56 -2.39 -0.02 2.10 16 35 H 0.09 2.19 7.42 -2.38 -0.02 2.17 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 11.58 7.49 -92.71 -0.69 10.88 16 38 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 39 H 0.03 1.23 7.52 -2.38 -0.02 1.21 16 40 H 0.38 16.90 7.50 -92.71 -0.69 16.21 16 41 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 42 H 0.04 1.60 7.20 -2.39 -0.02 1.59 16 43 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.08 1.73 7.80 -2.39 -0.02 1.71 16 49 H 0.06 1.64 7.76 -2.39 -0.02 1.62 16 Total: -1.00 -71.23 403.75 -3.41 -74.64 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -1.21 Total: 41.20 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.00 Total: -6.16 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -4.39 Total: -132.10 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -4.54 Total: -77.53 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 53.41 SS G_CDS: -0.30 Total: 53.10 kcal Total: -71.23 -3.41 -74.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715300636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.540 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds