Wall clock time and date at job start Wed Apr 1 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99522 * 2 1 4 4 C 1.50697 * 109.47344 * 85.00250 * 3 2 1 5 5 O 1.21283 * 119.99639 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00148 * 180.26925 * 4 3 2 7 7 C 1.46499 * 119.99976 * 175.08465 * 6 4 3 8 8 H 1.08997 * 109.47196 * 3.09389 * 7 6 4 9 9 C 1.53000 * 109.47341 * 243.09363 * 7 6 4 10 10 N 1.46504 * 109.47027 * 55.00175 * 9 7 6 11 11 C 1.36930 * 120.00179 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.38820 * 120.00205 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99959 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99802 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46945 * 89.99879 * 15 13 11 17 17 H 1.48496 * 109.47043 * 209.99867 * 15 13 11 18 18 H 1.48501 * 109.47206 * 330.00042 * 15 13 11 19 19 C 1.53005 * 109.47312 * 123.09703 * 7 6 4 20 20 C 1.54268 * 110.03346 * 56.93307 * 19 7 6 21 21 C 1.54966 * 104.15892 * 217.14065 * 20 19 7 22 22 C 1.54884 * 102.77946 * 37.89001 * 21 20 19 23 23 C 1.53879 * 110.02912 * 299.71665 * 19 7 6 24 24 S 1.65602 * 120.00102 * 180.02562 * 2 1 3 25 25 C 1.81398 * 104.44739 * 269.99782 * 24 2 1 26 26 O 1.42098 * 104.27747 * 26.07042 * 24 2 1 27 27 O 1.42096 * 104.27643 * 153.92501 * 24 2 1 28 28 H 1.08997 * 109.47598 * 90.00213 * 1 2 3 29 29 H 1.09006 * 109.47075 * 209.99678 * 1 2 3 30 30 H 1.08996 * 109.47608 * 329.99861 * 1 2 3 31 31 H 1.09000 * 109.47632 * 324.99553 * 3 2 1 32 32 H 1.09007 * 109.46977 * 204.99985 * 3 2 1 33 33 H 0.97001 * 120.00100 * 355.09017 * 6 4 3 34 34 H 1.09005 * 109.47565 * 174.99713 * 9 7 6 35 35 H 1.09007 * 109.47381 * 295.00199 * 9 7 6 36 36 H 0.96998 * 119.99822 * 359.97438 * 10 9 7 37 37 H 0.97006 * 120.00384 * 179.97438 * 14 13 11 38 38 H 1.08994 * 110.02045 * 178.32759 * 19 7 6 39 39 H 1.09009 * 110.48252 * 335.78575 * 20 19 7 40 40 H 1.09000 * 110.48723 * 98.42696 * 20 19 7 41 41 H 1.08995 * 110.72014 * 279.57350 * 21 20 19 42 42 H 1.08998 * 110.91912 * 156.29475 * 21 20 19 43 43 H 1.08999 * 110.48894 * 203.40840 * 22 21 20 44 44 H 1.08997 * 110.60635 * 80.81241 * 22 21 20 45 45 H 1.08994 * 110.03117 * 238.56492 * 23 19 7 46 46 H 1.08998 * 110.02960 * 359.95182 * 23 19 7 47 47 H 1.08996 * 109.47117 * 60.00408 * 25 24 2 48 48 H 1.09005 * 109.46765 * 179.97438 * 25 24 2 49 49 H 1.08998 * 109.47281 * 299.99823 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8774 1.1235 2.3337 6 7 2.9804 2.9267 1.6602 7 6 3.0271 3.4641 3.0223 8 1 2.5427 2.7661 3.7050 9 6 2.2981 4.8086 3.0654 10 7 0.9371 4.6429 2.5492 11 6 0.0914 5.7182 2.4906 12 1 0.4274 6.6884 2.8254 13 6 -1.1981 5.5613 2.0009 14 7 -2.0111 6.5948 1.9451 15 14 -1.7792 3.8833 1.4212 16 1 -2.3888 3.1501 2.5597 17 1 -2.7882 4.0535 0.3450 18 1 -0.6228 3.1124 0.8982 19 6 4.4848 3.6608 3.4434 20 6 5.2041 4.5869 2.4410 21 6 6.6321 3.9944 2.3349 22 6 6.3747 2.4681 2.3899 23 6 5.2289 2.3142 3.4114 24 16 2.2930 -1.4341 -0.0006 25 6 2.5194 -1.8268 1.7558 26 8 1.3970 -2.3559 -0.6062 27 8 3.5394 -1.1189 -0.6058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6501 2.0043 -0.5895 32 1 3.1857 1.1178 -0.4343 33 1 3.4095 3.4066 0.9346 34 1 2.2553 5.1659 4.0944 35 1 2.8340 5.5324 2.4514 36 1 0.6353 3.7715 2.2482 37 1 -2.9121 6.4853 1.6026 38 1 4.5295 4.0882 4.4450 39 1 4.7067 4.5591 1.4714 40 1 5.2409 5.6071 2.8229 41 1 7.2455 4.3133 3.1775 42 1 7.1001 4.2734 1.3909 43 1 7.2657 1.9431 2.7343 44 1 6.0672 2.0955 1.4128 45 1 5.6354 2.0887 4.3972 46 1 4.5513 1.5206 3.0967 47 1 1.5452 -1.9197 2.2358 48 1 3.0619 -2.7675 1.8508 49 1 3.0867 -1.0297 2.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716817822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:57 Heat of formation + Delta-G solvation = -92.498796 kcal Electronic energy + Delta-G solvation = -31186.318512 eV Core-core repulsion = 27083.071540 eV Total energy + Delta-G solvation = -4103.246972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.26857 -38.38678 -37.32454 -36.23963 -35.89919 -35.27915 -33.64468 -31.58459 -30.32410 -29.54767 -28.80914 -28.55674 -26.58022 -25.28270 -23.12115 -21.57144 -21.17790 -20.22997 -19.41396 -19.02378 -17.92230 -17.75716 -17.46781 -16.58267 -16.31754 -15.93472 -15.81041 -15.12988 -14.71374 -14.56472 -14.43827 -14.12526 -13.79924 -13.55187 -13.36344 -13.30720 -13.26059 -13.12079 -12.89276 -12.76845 -12.45024 -12.27717 -12.24748 -11.93165 -11.74897 -11.66121 -11.57754 -11.21274 -11.16890 -11.09837 -10.93660 -10.73071 -10.66738 -10.58670 -10.51854 -10.21905 -10.09700 -9.65306 -9.10167 -8.93733 -8.83966 -7.27685 -5.81520 -3.16726 0.09717 2.32157 2.63805 3.27720 3.27987 3.36589 3.40670 3.67867 3.96995 4.42155 4.48520 4.53891 4.57206 4.64972 4.73994 4.75111 4.86640 5.08387 5.14405 5.25057 5.32663 5.38630 5.47369 5.50793 5.52502 5.55001 5.58577 5.62253 5.73352 5.74860 5.77627 5.81307 5.85913 5.89002 5.98139 6.05041 6.17388 6.20585 6.23982 6.30705 6.36737 6.54773 6.76955 7.57859 7.94526 8.26793 8.37463 9.16913 9.89250 10.09410 11.36700 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007841 B = 0.005606 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.054001 B = 4993.422532 C = 7982.099625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.980 5.980 3 C 0.092 3.908 4 C 0.491 3.509 5 O -0.539 6.539 6 N -0.706 5.706 7 C 0.133 3.867 8 H 0.101 0.899 9 C 0.147 3.853 10 N -0.752 5.752 11 C -0.243 4.243 12 H 0.090 0.910 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.885 3.115 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.277 1.277 19 C -0.098 4.098 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.118 4.118 24 S 2.611 3.389 25 C -0.661 4.661 26 O -0.956 6.956 27 O -0.960 6.960 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.401 0.599 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.362 0.638 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.130 0.870 48 H 0.121 0.879 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.146 -12.984 -1.422 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.816 5.816 3 C -0.038 4.038 4 C 0.275 3.725 5 O -0.416 6.416 6 N -0.358 5.358 7 C 0.028 3.972 8 H 0.119 0.881 9 C 0.019 3.981 10 N -0.398 5.398 11 C -0.373 4.373 12 H 0.107 0.893 13 C -0.191 4.191 14 N -0.581 5.581 15 Si 0.716 3.284 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.204 1.204 19 C -0.118 4.118 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.156 4.156 24 S 2.704 3.296 25 C -0.812 4.812 26 O -0.946 6.946 27 O -0.950 6.950 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.236 0.764 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.149 0.851 48 H 0.139 0.861 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.937 -13.677 -1.505 21.055 hybrid contribution -0.587 -0.557 0.106 0.816 sum 15.350 -14.234 -1.399 20.981 Atomic orbital electron populations 1.21567 0.77447 1.03828 1.02343 1.57002 1.15568 1.19790 1.89217 1.21328 1.00035 0.87573 0.94814 1.21279 0.77816 0.81462 0.91953 1.90671 1.48119 1.56899 1.45916 1.45897 1.55523 1.23209 1.11183 1.21442 0.95033 0.97088 0.83654 0.88073 1.21020 0.86125 0.93202 0.97787 1.42623 1.10293 1.09057 1.77793 1.19043 0.92712 0.89834 1.35702 0.89263 1.24665 0.96387 0.96674 1.01404 1.69697 1.07337 1.28778 1.52314 0.86563 0.78143 0.85153 0.78559 1.21172 1.21793 1.20401 1.22085 0.93871 0.95803 0.99999 1.22439 0.94944 0.98907 0.99323 1.22503 0.96996 0.95284 1.01399 1.22345 0.97994 0.96342 0.99425 1.22158 0.97054 0.97320 0.99063 1.04896 0.73746 0.73145 0.77812 1.30457 1.12249 1.11510 1.26941 1.93604 1.64610 1.62351 1.74078 1.93575 1.44132 1.83052 1.74292 0.91925 0.90916 0.90451 0.86445 0.85901 0.76370 0.94648 0.94990 0.80492 0.93066 0.89817 0.91473 0.91216 0.91740 0.91785 0.92183 0.91736 0.92174 0.91644 0.85146 0.86075 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 10.20 59.85 0.61 1.76 16 2 N -0.98 -11.87 2.61 -123.05 -0.32 -12.19 16 3 C 0.09 1.07 6.12 -5.20 -0.03 1.03 16 4 C 0.49 6.72 7.01 -10.99 -0.08 6.64 16 5 O -0.54 -8.62 14.36 5.55 0.08 -8.54 16 6 N -0.71 -8.92 3.73 -53.81 -0.20 -9.12 16 7 C 0.13 1.83 2.04 -67.93 -0.14 1.69 16 8 H 0.10 1.61 6.91 -51.93 -0.36 1.25 16 9 C 0.15 2.57 5.84 -4.04 -0.02 2.55 16 10 N -0.75 -17.01 5.24 -59.90 -0.31 -17.32 16 11 C -0.24 -6.68 10.47 -15.06 -0.16 -6.84 16 12 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 13 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 14 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 15 Si 0.88 21.81 27.74 -169.99 -4.71 17.10 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.20 6.03 56.52 0.34 -5.86 16 19 C -0.10 -1.05 2.81 -89.50 -0.25 -1.30 16 20 C -0.12 -1.14 5.14 -25.03 -0.13 -1.27 16 21 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 22 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 23 C -0.12 -1.18 6.20 -25.61 -0.16 -1.34 16 24 S 2.61 30.15 6.02 -107.50 -0.65 29.50 16 25 C -0.66 -6.20 10.53 101.05 1.06 -5.13 16 26 O -0.96 -13.46 17.09 -57.54 -0.98 -14.45 16 27 O -0.96 -12.80 16.53 -57.54 -0.95 -13.75 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 30 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 31 H 0.12 1.27 8.11 -51.93 -0.42 0.85 16 32 H 0.12 1.17 6.82 -51.93 -0.35 0.81 16 33 H 0.40 4.23 6.99 -40.82 -0.29 3.95 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.55 7.14 -51.93 -0.37 0.18 16 36 H 0.36 8.20 4.76 -40.82 -0.19 8.01 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.65 5.97 -51.92 -0.31 0.34 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.74 7.04 -51.93 -0.37 0.38 16 47 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.12 0.85 8.14 -51.92 -0.42 0.43 16 49 H 0.13 1.33 7.22 -51.93 -0.37 0.95 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -35.72 395.38 -9.15 -44.87 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.10 Total: 10.76 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 0.27 Total: -4.66 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.06 Total: -66.79 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.85 Total: -36.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: 30.15 SS G_CDS: -0.65 Total: 29.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.72 -9.15 -44.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716817822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.631 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds