Wall clock time and date at job start Wed Apr 1 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99522 * 2 1 4 4 C 1.50697 * 109.47344 * 85.00250 * 3 2 1 5 5 O 1.21283 * 119.99639 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00148 * 180.26925 * 4 3 2 7 7 C 1.46499 * 119.99976 * 175.08465 * 6 4 3 8 8 H 1.08997 * 109.47196 * 3.09389 * 7 6 4 9 9 C 1.53000 * 109.47341 * 243.09363 * 7 6 4 10 10 N 1.46504 * 109.47027 * 55.00175 * 9 7 6 11 11 C 1.36930 * 120.00179 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.38820 * 120.00205 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99959 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99802 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46945 * 89.99879 * 15 13 11 17 17 H 1.48496 * 109.47043 * 209.99867 * 15 13 11 18 18 H 1.48501 * 109.47206 * 330.00042 * 15 13 11 19 19 C 1.53005 * 109.47312 * 123.09703 * 7 6 4 20 20 C 1.54268 * 110.03346 * 56.93307 * 19 7 6 21 21 C 1.54966 * 104.15892 * 217.14065 * 20 19 7 22 22 C 1.54884 * 102.77946 * 37.89001 * 21 20 19 23 23 C 1.53879 * 110.02912 * 299.71665 * 19 7 6 24 24 S 1.65602 * 120.00102 * 180.02562 * 2 1 3 25 25 C 1.81398 * 104.44739 * 269.99782 * 24 2 1 26 26 O 1.42098 * 104.27747 * 26.07042 * 24 2 1 27 27 O 1.42096 * 104.27643 * 153.92501 * 24 2 1 28 28 H 1.08997 * 109.47598 * 90.00213 * 1 2 3 29 29 H 1.09006 * 109.47075 * 209.99678 * 1 2 3 30 30 H 1.08996 * 109.47608 * 329.99861 * 1 2 3 31 31 H 1.09000 * 109.47632 * 324.99553 * 3 2 1 32 32 H 1.09007 * 109.46977 * 204.99985 * 3 2 1 33 33 H 0.97001 * 120.00100 * 355.09017 * 6 4 3 34 34 H 1.09005 * 109.47565 * 174.99713 * 9 7 6 35 35 H 1.09007 * 109.47381 * 295.00199 * 9 7 6 36 36 H 0.96998 * 119.99822 * 359.97438 * 10 9 7 37 37 H 0.97006 * 120.00384 * 179.97438 * 14 13 11 38 38 H 1.08994 * 110.02045 * 178.32759 * 19 7 6 39 39 H 1.09009 * 110.48252 * 335.78575 * 20 19 7 40 40 H 1.09000 * 110.48723 * 98.42696 * 20 19 7 41 41 H 1.08995 * 110.72014 * 279.57350 * 21 20 19 42 42 H 1.08998 * 110.91912 * 156.29475 * 21 20 19 43 43 H 1.08999 * 110.48894 * 203.40840 * 22 21 20 44 44 H 1.08997 * 110.60635 * 80.81241 * 22 21 20 45 45 H 1.08994 * 110.03117 * 238.56492 * 23 19 7 46 46 H 1.08998 * 110.02960 * 359.95182 * 23 19 7 47 47 H 1.08996 * 109.47117 * 60.00408 * 25 24 2 48 48 H 1.09005 * 109.46765 * 179.97438 * 25 24 2 49 49 H 1.08998 * 109.47281 * 299.99823 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8774 1.1235 2.3337 6 7 2.9804 2.9267 1.6602 7 6 3.0271 3.4641 3.0223 8 1 2.5427 2.7661 3.7050 9 6 2.2981 4.8086 3.0654 10 7 0.9371 4.6429 2.5492 11 6 0.0914 5.7182 2.4906 12 1 0.4274 6.6884 2.8254 13 6 -1.1981 5.5613 2.0009 14 7 -2.0111 6.5948 1.9451 15 14 -1.7792 3.8833 1.4212 16 1 -2.3888 3.1501 2.5597 17 1 -2.7882 4.0535 0.3450 18 1 -0.6228 3.1124 0.8982 19 6 4.4848 3.6608 3.4434 20 6 5.2041 4.5869 2.4410 21 6 6.6321 3.9944 2.3349 22 6 6.3747 2.4681 2.3899 23 6 5.2289 2.3142 3.4114 24 16 2.2930 -1.4341 -0.0006 25 6 2.5194 -1.8268 1.7558 26 8 1.3970 -2.3559 -0.6062 27 8 3.5394 -1.1189 -0.6058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6501 2.0043 -0.5895 32 1 3.1857 1.1178 -0.4343 33 1 3.4095 3.4066 0.9346 34 1 2.2553 5.1659 4.0944 35 1 2.8340 5.5324 2.4514 36 1 0.6353 3.7715 2.2482 37 1 -2.9121 6.4853 1.6026 38 1 4.5295 4.0882 4.4450 39 1 4.7067 4.5591 1.4714 40 1 5.2409 5.6071 2.8229 41 1 7.2455 4.3133 3.1775 42 1 7.1001 4.2734 1.3909 43 1 7.2657 1.9431 2.7343 44 1 6.0672 2.0955 1.4128 45 1 5.6354 2.0887 4.3972 46 1 4.5513 1.5206 3.0967 47 1 1.5452 -1.9197 2.2358 48 1 3.0619 -2.7675 1.8508 49 1 3.0867 -1.0297 2.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716817822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:56 Heat of formation + Delta-G solvation = -119.311779 kcal Electronic energy + Delta-G solvation = -31187.481210 eV Core-core repulsion = 27083.071540 eV Total energy + Delta-G solvation = -4104.409670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.31581 -39.31810 -38.29706 -37.21378 -36.99889 -36.58409 -35.10862 -33.36610 -31.63618 -30.31392 -29.59449 -29.45645 -27.93986 -26.28735 -24.71255 -22.96954 -22.17825 -21.08412 -20.43289 -19.98717 -19.63769 -18.83292 -18.46472 -17.55837 -17.24292 -16.98797 -16.78876 -16.53502 -16.02445 -15.68668 -15.55705 -15.44393 -15.03592 -14.77161 -14.37329 -14.25922 -14.19521 -14.10745 -13.99089 -13.72725 -13.70029 -13.44717 -13.35759 -13.26365 -13.12391 -12.86717 -12.72309 -12.58969 -12.15493 -12.01780 -11.92221 -11.86105 -11.81639 -11.73483 -11.51541 -11.42335 -11.35597 -11.19551 -10.99237 -10.03451 -9.95261 -9.28644 -8.03553 -5.35514 -0.77579 1.30208 1.37901 1.42872 1.43451 1.59217 2.26793 2.45440 2.81627 3.07455 3.28533 3.45720 3.56248 3.72848 3.79470 3.85737 4.01270 4.05035 4.09169 4.24097 4.26710 4.38519 4.42204 4.53961 4.62287 4.64974 4.72776 4.81035 4.81306 4.89761 4.92158 4.92503 4.93554 4.97211 5.09868 5.17364 5.18815 5.28849 5.34220 5.42410 5.49777 5.57919 5.63977 5.76190 6.20035 6.57516 7.07623 7.24791 7.84809 8.02932 9.17723 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007841 B = 0.005606 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.054001 B = 4993.422532 C = 7982.099625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.985 5.985 3 C 0.090 3.910 4 C 0.485 3.515 5 O -0.563 6.563 6 N -0.701 5.701 7 C 0.147 3.853 8 H 0.082 0.918 9 C 0.143 3.857 10 N -0.753 5.753 11 C -0.227 4.227 12 H 0.059 0.941 13 C -0.062 4.062 14 N -0.983 5.983 15 Si 0.948 3.052 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.245 1.245 19 C -0.092 4.092 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.115 4.115 24 S 2.622 3.378 25 C -0.649 4.649 26 O -0.984 6.984 27 O -0.979 6.979 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.412 0.588 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.364 0.636 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.135 0.865 48 H 0.147 0.853 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.213 -14.738 -1.813 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.820 5.820 3 C -0.039 4.039 4 C 0.270 3.730 5 O -0.442 6.442 6 N -0.354 5.354 7 C 0.041 3.959 8 H 0.100 0.900 9 C 0.016 3.984 10 N -0.399 5.399 11 C -0.358 4.358 12 H 0.077 0.923 13 C -0.254 4.254 14 N -0.634 5.634 15 Si 0.777 3.223 16 H -0.219 1.219 17 H -0.221 1.221 18 H -0.169 1.169 19 C -0.111 4.111 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 S 2.717 3.283 25 C -0.802 4.802 26 O -0.974 6.974 27 O -0.970 6.970 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.250 0.750 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.197 0.803 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.154 0.846 48 H 0.166 0.834 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.073 -15.435 -1.928 23.845 hybrid contribution -1.158 0.052 0.344 1.209 sum 16.915 -15.383 -1.584 22.919 Atomic orbital electron populations 1.21634 0.77667 1.03531 1.02956 1.56999 1.15545 1.20075 1.89428 1.21473 1.01331 0.87640 0.93476 1.21717 0.77244 0.81370 0.92626 1.90658 1.49097 1.57625 1.46839 1.45855 1.55346 1.23145 1.11066 1.21171 0.96368 0.94215 0.84144 0.90004 1.21225 0.84082 0.95915 0.97155 1.42629 1.11656 1.07719 1.77880 1.19037 0.93230 0.89975 1.33564 0.92271 1.25426 0.96776 1.00478 1.02712 1.69870 1.07710 1.31323 1.54448 0.85527 0.78427 0.80717 0.77649 1.21929 1.22096 1.16934 1.22036 0.91783 0.96872 1.00441 1.22452 0.95813 0.98622 0.98838 1.22469 0.96069 0.94751 1.02229 1.22337 0.97765 0.96738 0.98993 1.22115 0.97144 0.96106 0.99890 1.04476 0.72836 0.72470 0.78480 1.30337 1.13005 1.12814 1.24085 1.93567 1.65276 1.63086 1.75510 1.93542 1.44693 1.83243 1.75525 0.90922 0.89810 0.92159 0.85488 0.83788 0.75029 0.95214 0.93956 0.80308 0.93471 0.89552 0.91443 0.91338 0.91170 0.90784 0.91227 0.91706 0.91543 0.92940 0.84617 0.83428 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.99 10.20 127.77 1.30 3.29 16 2 N -0.99 -21.92 2.61 -543.23 -1.42 -23.34 16 3 C 0.09 1.87 6.12 85.63 0.52 2.40 16 4 C 0.49 12.32 7.01 87.66 0.61 12.93 16 5 O -0.56 -17.09 14.36 -3.04 -0.04 -17.13 16 6 N -0.70 -16.35 3.73 -442.54 -1.65 -18.00 16 7 C 0.15 3.84 2.04 44.99 0.09 3.93 16 8 H 0.08 2.53 6.91 -2.39 -0.02 2.51 16 9 C 0.14 4.89 5.84 86.38 0.50 5.39 16 10 N -0.75 -33.54 5.24 -343.43 -1.80 -35.34 16 11 C -0.23 -12.60 10.47 84.04 0.88 -11.72 16 12 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 13 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 14 N -0.98 -62.41 13.97 21.65 0.30 -62.11 16 15 Si 0.95 45.22 27.74 68.60 1.90 47.12 16 16 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 17 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 18 H -0.24 -10.16 6.03 99.48 0.60 -9.56 16 19 C -0.09 -1.79 2.81 -10.07 -0.03 -1.82 16 20 C -0.12 -2.02 5.14 31.70 0.16 -1.86 16 21 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 22 C -0.12 -1.77 6.83 31.67 0.22 -1.56 16 23 C -0.11 -2.04 6.20 31.32 0.19 -1.84 16 24 S 2.62 55.65 6.02 -56.49 -0.34 55.31 16 25 C -0.65 -10.57 10.53 113.37 1.19 -9.38 16 26 O -0.98 -26.27 17.09 -127.65 -2.18 -28.45 16 27 O -0.98 -24.23 16.53 -127.65 -2.11 -26.34 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.67 7.79 -2.38 -0.02 1.65 16 30 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 31 H 0.13 2.41 8.11 -2.39 -0.02 2.39 16 32 H 0.14 2.36 6.82 -2.38 -0.02 2.34 16 33 H 0.41 7.71 6.99 -92.71 -0.65 7.07 16 34 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.04 1.39 7.14 -2.38 -0.02 1.37 16 36 H 0.36 15.95 4.76 -92.71 -0.44 15.51 16 37 H 0.26 15.60 8.31 -92.70 -0.77 14.82 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.14 5.97 -2.38 -0.01 1.12 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.09 7.04 -2.39 -0.02 1.07 16 47 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.13 2.31 7.22 -2.39 -0.02 2.29 16 Total: -1.00 -77.33 395.38 -1.23 -78.56 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.24 Total: 34.52 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 6.34 Total: -4.80 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -4.56 Total: -138.79 kcal Atomic # 8 Polarization: -67.58 SS G_CDS: -4.33 Total: -71.92 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: 55.65 SS G_CDS: -0.34 Total: 55.31 kcal Total: -77.33 -1.23 -78.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716817822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.751 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds