Wall clock time and date at job start Wed Apr 1 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81394 * 109.47531 * 2 1 4 4 O 1.42103 * 110.54460 * 68.36874 * 3 2 1 5 5 O 1.42104 * 110.54066 * 291.62014 * 3 2 1 6 6 N 1.65595 * 104.44984 * 179.97438 * 3 2 1 7 7 C 1.46496 * 120.00351 * 64.99780 * 6 3 2 8 8 H 1.09000 * 109.47233 * 334.99897 * 7 6 3 9 9 C 1.52996 * 109.47227 * 94.99958 * 7 6 3 10 10 C 1.50709 * 109.47245 * 215.00074 * 7 6 3 11 11 O 1.21281 * 119.99943 * 333.06418 * 10 7 6 12 12 N 1.34776 * 119.99877 * 153.06417 * 10 7 6 13 13 C 1.47428 * 125.64936 * 4.59626 * 12 10 7 14 14 C 1.55129 * 104.71912 * 155.81851 * 13 12 10 15 15 C 1.55160 * 101.48691 * 37.29918 * 14 13 12 16 16 C 1.52992 * 110.87418 * 82.76487 * 15 14 13 17 17 C 1.52997 * 110.71830 * 205.96779 * 15 14 13 18 18 N 1.46494 * 109.47355 * 293.52217 * 17 15 14 19 19 C 1.36937 * 120.00340 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99810 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00345 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99944 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00065 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47191 * 90.00641 * 23 21 19 25 25 H 1.48506 * 109.46903 * 210.00455 * 23 21 19 26 26 H 1.48498 * 109.47254 * 329.99889 * 23 21 19 27 27 C 1.47022 * 125.64727 * 184.90758 * 12 10 7 28 28 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47235 * 300.00782 * 1 2 3 30 30 H 1.09003 * 109.46525 * 60.00147 * 1 2 3 31 31 H 1.08996 * 109.47235 * 239.99217 * 2 1 3 32 32 H 1.09003 * 109.46525 * 119.99853 * 2 1 3 33 33 H 0.97006 * 120.00009 * 245.00022 * 6 3 2 34 34 H 1.09005 * 109.46910 * 174.72564 * 9 7 6 35 35 H 1.09007 * 109.47339 * 54.72944 * 9 7 6 36 36 H 1.08995 * 109.47579 * 294.72486 * 9 7 6 37 37 H 1.08993 * 110.36728 * 274.74847 * 13 12 10 38 38 H 1.08995 * 110.36600 * 37.07229 * 13 12 10 39 39 H 1.09001 * 111.19447 * 279.19380 * 14 13 12 40 40 H 1.09005 * 110.93494 * 155.29131 * 14 13 12 41 41 H 1.09002 * 109.47337 * 306.39105 * 16 15 14 42 42 H 1.09002 * 109.47190 * 66.38950 * 16 15 14 43 43 H 1.08997 * 109.47372 * 186.39176 * 16 15 14 44 44 H 1.09007 * 109.47435 * 53.52408 * 17 15 14 45 45 H 1.08999 * 109.47082 * 173.51856 * 17 15 14 46 46 H 0.96999 * 120.00114 * 359.97438 * 18 17 15 47 47 H 0.96993 * 120.00280 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.88145 * 300.44504 * 27 12 10 49 49 H 1.08999 * 109.88015 * 61.60173 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3439 1.2369 5 8 1.8388 2.3437 -1.2371 6 7 3.7844 1.5651 0.0007 7 6 4.4676 0.9666 -1.1487 8 1 3.7820 0.3006 -1.6726 9 6 4.9306 2.0724 -2.0993 10 6 5.6625 0.1825 -0.6704 11 8 6.2140 0.4891 0.3653 12 7 6.1182 -0.8595 -1.3937 13 6 5.6067 -1.2802 -2.7109 14 6 6.7866 -2.0454 -3.3658 15 6 7.3920 -2.7845 -2.1432 16 6 6.6259 -4.0766 -1.8531 17 6 8.8768 -3.0769 -2.3684 18 7 9.0244 -4.0424 -3.4603 19 6 10.2718 -4.4581 -3.8429 20 1 11.1468 -4.0745 -3.3394 21 6 10.4115 -5.3733 -4.8771 22 7 9.3451 -5.8413 -5.4904 23 14 12.1131 -5.9409 -5.3985 24 1 12.4955 -7.1432 -4.6152 25 1 12.1015 -6.2757 -6.8453 26 1 13.0950 -4.8550 -5.1497 27 6 7.2033 -1.7686 -0.9970 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.2983 1.8764 0.7623 34 1 5.5195 1.6353 -2.9057 35 1 5.5410 2.7905 -1.5516 36 1 4.0612 2.5793 -2.5179 37 1 4.7453 -1.9371 -2.5911 38 1 5.3405 -0.4096 -3.3102 39 1 7.5091 -1.3562 -3.8028 40 1 6.4254 -2.7540 -4.1112 41 1 5.5637 -3.8541 -1.7512 42 1 6.7730 -4.7784 -2.6740 43 1 6.9950 -4.5179 -0.9273 44 1 9.3939 -2.1530 -2.6280 45 1 9.3080 -3.4906 -1.4568 46 1 8.2384 -4.3878 -3.9118 47 1 9.4427 -6.4805 -6.2133 48 1 8.1235 -1.2041 -0.8466 49 1 6.9324 -2.2910 -0.0795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716864219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:49 Heat of formation + Delta-G solvation = -98.230861 kcal Electronic energy + Delta-G solvation = -29607.028225 eV Core-core repulsion = 25503.532692 eV Total energy + Delta-G solvation = -4103.495533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.58441 -38.51173 -37.50480 -36.36827 -35.74818 -34.98036 -33.65855 -32.83023 -30.63847 -30.11989 -29.44240 -26.96846 -25.80338 -24.57464 -24.21541 -22.88411 -22.45764 -19.87083 -19.70288 -19.00075 -18.37695 -17.32051 -17.02682 -16.79424 -16.56947 -16.25048 -15.80915 -15.01038 -14.82040 -14.50988 -14.46641 -14.05608 -14.00645 -13.81783 -13.55992 -13.20556 -13.05882 -13.02305 -12.95174 -12.59610 -12.51295 -12.49305 -12.37968 -12.26379 -12.12854 -12.03588 -11.96704 -11.77159 -11.59473 -11.16662 -11.08551 -10.87509 -10.68529 -10.44243 -10.33844 -10.30932 -10.03498 -9.80272 -9.68102 -8.93277 -8.79411 -6.98204 -5.83022 -3.11147 -0.20146 2.08504 2.39117 2.79185 3.34478 3.39902 3.45783 3.46778 3.71915 3.99130 4.10403 4.24596 4.34584 4.49702 4.58019 4.65529 4.66961 4.70179 4.88278 4.96067 5.06818 5.15811 5.19199 5.23568 5.34439 5.41688 5.43091 5.52035 5.54646 5.61363 5.77298 5.86965 5.87673 5.94409 5.99613 6.12197 6.20309 6.29692 6.36466 6.54868 6.58221 6.67947 6.75453 7.31142 7.65458 7.87528 8.36370 9.48126 10.04286 10.39368 11.39914 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.002118 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.655192 B =13213.975427 C =13496.293003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.635 4.635 3 S 2.611 3.389 4 O -0.953 6.953 5 O -0.950 6.950 6 N -1.104 6.104 7 C 0.140 3.860 8 H 0.101 0.899 9 C -0.167 4.167 10 C 0.523 3.477 11 O -0.533 6.533 12 N -0.610 5.610 13 C 0.088 3.912 14 C -0.115 4.115 15 C -0.078 4.078 16 C -0.132 4.132 17 C 0.168 3.832 18 N -0.728 5.728 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.118 3.882 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.427 0.573 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.072 0.928 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 12.337 8.737 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.703 3.297 4 O -0.943 6.943 5 O -0.939 6.939 6 N -0.864 5.864 7 C 0.029 3.971 8 H 0.118 0.882 9 C -0.226 4.226 10 C 0.309 3.691 11 O -0.409 6.409 12 N -0.344 5.344 13 C -0.035 4.035 14 C -0.153 4.153 15 C -0.079 4.079 16 C -0.190 4.190 17 C 0.040 3.960 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.004 4.004 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.265 0.735 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.220 13.294 9.178 24.350 hybrid contribution 1.153 -1.292 -0.196 1.743 sum -17.067 12.001 8.983 22.715 Atomic orbital electron populations 1.21504 0.90131 1.05331 1.03546 1.30539 1.07621 1.26383 1.11923 1.05099 0.72742 0.77346 0.74544 1.93623 1.82767 1.72967 1.44987 1.93619 1.83129 1.71847 1.45345 1.55577 1.25857 1.77148 1.27837 1.20600 0.93981 0.95421 0.87119 0.88153 1.22260 1.03531 0.98121 0.98708 1.20229 0.85310 0.79611 0.83945 1.90706 1.58741 1.67253 1.24240 1.48530 1.36504 1.28933 1.20483 1.22658 0.98209 0.99385 0.83227 1.22864 0.96050 0.99158 0.97236 1.21814 0.98187 0.94446 0.93489 1.21765 0.98024 0.96405 1.02782 1.20593 0.89956 0.93236 0.92167 1.42331 1.06295 1.50181 1.38510 1.19217 0.85328 1.19491 1.12956 0.91227 1.24714 0.97101 1.00043 0.99032 1.69641 1.27200 1.34990 1.26455 0.86194 0.83806 0.78596 0.77608 1.21742 1.21788 1.20784 1.22094 0.90009 0.90609 0.97713 0.89778 0.90891 0.90783 0.85059 0.84672 0.73538 0.90662 0.90919 0.89499 0.90979 0.90339 0.90003 0.89047 0.93585 0.90696 0.92600 0.96032 0.96046 0.78064 0.93509 0.90924 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.92 37.16 0.37 -0.35 16 2 C -0.64 -3.35 6.68 37.16 0.25 -3.10 16 3 S 2.61 21.53 5.38 -107.50 -0.58 20.95 16 4 O -0.95 -10.96 18.08 -57.54 -1.04 -12.00 16 5 O -0.95 -10.03 17.21 -57.54 -0.99 -11.02 16 6 N -1.10 -9.39 5.31 -5.88 -0.03 -9.43 16 7 C 0.14 1.20 2.39 -69.08 -0.16 1.04 16 8 H 0.10 0.57 6.51 -51.93 -0.34 0.24 16 9 C -0.17 -1.37 9.41 37.16 0.35 -1.03 16 10 C 0.52 6.06 7.04 -10.98 -0.08 5.98 16 11 O -0.53 -7.96 16.47 5.56 0.09 -7.86 16 12 N -0.61 -6.84 3.32 -170.38 -0.57 -7.41 16 13 C 0.09 0.81 5.95 -2.41 -0.01 0.79 16 14 C -0.12 -1.43 5.74 -24.46 -0.14 -1.57 16 15 C -0.08 -1.10 0.61 -152.68 -0.09 -1.19 16 16 C -0.13 -1.81 8.28 37.15 0.31 -1.50 16 17 C 0.17 3.10 5.08 -4.05 -0.02 3.08 16 18 N -0.73 -16.94 5.15 -59.91 -0.31 -17.25 16 19 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.12 1.53 6.05 -3.07 -0.02 1.51 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.13 0.47 7.44 -51.93 -0.39 0.08 16 32 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.43 3.82 8.09 -34.47 -0.28 3.54 16 34 H 0.07 0.55 7.05 -51.93 -0.37 0.18 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.70 7.53 -51.93 -0.39 0.31 16 37 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 38 H 0.08 0.56 6.60 -51.93 -0.34 0.22 16 39 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 40 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 41 H 0.05 0.52 7.41 -51.93 -0.38 0.13 16 42 H 0.07 1.21 6.69 -51.93 -0.35 0.86 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.38 9.23 6.21 -40.82 -0.25 8.97 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 49 H 0.07 0.88 7.84 -51.93 -0.41 0.48 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -35.12 401.67 -9.23 -44.35 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.06 Total: 6.40 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 0.50 Total: -3.31 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.18 Total: -60.32 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.94 Total: -30.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 21.53 SS G_CDS: -0.58 Total: 20.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.12 -9.23 -44.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716864219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.880 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds