Wall clock time and date at job start Wed Apr 1 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81394 * 109.47531 * 2 1 4 4 O 1.42103 * 110.54460 * 68.36874 * 3 2 1 5 5 O 1.42104 * 110.54066 * 291.62014 * 3 2 1 6 6 N 1.65595 * 104.44984 * 179.97438 * 3 2 1 7 7 C 1.46496 * 120.00351 * 64.99780 * 6 3 2 8 8 H 1.09000 * 109.47233 * 334.99897 * 7 6 3 9 9 C 1.52996 * 109.47227 * 94.99958 * 7 6 3 10 10 C 1.50709 * 109.47245 * 215.00074 * 7 6 3 11 11 O 1.21281 * 119.99943 * 333.06418 * 10 7 6 12 12 N 1.34776 * 119.99877 * 153.06417 * 10 7 6 13 13 C 1.47428 * 125.64936 * 4.59626 * 12 10 7 14 14 C 1.55129 * 104.71912 * 155.81851 * 13 12 10 15 15 C 1.55160 * 101.48691 * 37.29918 * 14 13 12 16 16 C 1.52992 * 110.87418 * 82.76487 * 15 14 13 17 17 C 1.52997 * 110.71830 * 205.96779 * 15 14 13 18 18 N 1.46494 * 109.47355 * 293.52217 * 17 15 14 19 19 C 1.36937 * 120.00340 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99810 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00345 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99944 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00065 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47191 * 90.00641 * 23 21 19 25 25 H 1.48506 * 109.46903 * 210.00455 * 23 21 19 26 26 H 1.48498 * 109.47254 * 329.99889 * 23 21 19 27 27 C 1.47022 * 125.64727 * 184.90758 * 12 10 7 28 28 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47235 * 300.00782 * 1 2 3 30 30 H 1.09003 * 109.46525 * 60.00147 * 1 2 3 31 31 H 1.08996 * 109.47235 * 239.99217 * 2 1 3 32 32 H 1.09003 * 109.46525 * 119.99853 * 2 1 3 33 33 H 0.97006 * 120.00009 * 245.00022 * 6 3 2 34 34 H 1.09005 * 109.46910 * 174.72564 * 9 7 6 35 35 H 1.09007 * 109.47339 * 54.72944 * 9 7 6 36 36 H 1.08995 * 109.47579 * 294.72486 * 9 7 6 37 37 H 1.08993 * 110.36728 * 274.74847 * 13 12 10 38 38 H 1.08995 * 110.36600 * 37.07229 * 13 12 10 39 39 H 1.09001 * 111.19447 * 279.19380 * 14 13 12 40 40 H 1.09005 * 110.93494 * 155.29131 * 14 13 12 41 41 H 1.09002 * 109.47337 * 306.39105 * 16 15 14 42 42 H 1.09002 * 109.47190 * 66.38950 * 16 15 14 43 43 H 1.08997 * 109.47372 * 186.39176 * 16 15 14 44 44 H 1.09007 * 109.47435 * 53.52408 * 17 15 14 45 45 H 1.08999 * 109.47082 * 173.51856 * 17 15 14 46 46 H 0.96999 * 120.00114 * 359.97438 * 18 17 15 47 47 H 0.96993 * 120.00280 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.88145 * 300.44504 * 27 12 10 49 49 H 1.08999 * 109.88015 * 61.60173 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3439 1.2369 5 8 1.8388 2.3437 -1.2371 6 7 3.7844 1.5651 0.0007 7 6 4.4676 0.9666 -1.1487 8 1 3.7820 0.3006 -1.6726 9 6 4.9306 2.0724 -2.0993 10 6 5.6625 0.1825 -0.6704 11 8 6.2140 0.4891 0.3653 12 7 6.1182 -0.8595 -1.3937 13 6 5.6067 -1.2802 -2.7109 14 6 6.7866 -2.0454 -3.3658 15 6 7.3920 -2.7845 -2.1432 16 6 6.6259 -4.0766 -1.8531 17 6 8.8768 -3.0769 -2.3684 18 7 9.0244 -4.0424 -3.4603 19 6 10.2718 -4.4581 -3.8429 20 1 11.1468 -4.0745 -3.3394 21 6 10.4115 -5.3733 -4.8771 22 7 9.3451 -5.8413 -5.4904 23 14 12.1131 -5.9409 -5.3985 24 1 12.4955 -7.1432 -4.6152 25 1 12.1015 -6.2757 -6.8453 26 1 13.0950 -4.8550 -5.1497 27 6 7.2033 -1.7686 -0.9970 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.2983 1.8764 0.7623 34 1 5.5195 1.6353 -2.9057 35 1 5.5410 2.7905 -1.5516 36 1 4.0612 2.5793 -2.5179 37 1 4.7453 -1.9371 -2.5911 38 1 5.3405 -0.4096 -3.3102 39 1 7.5091 -1.3562 -3.8028 40 1 6.4254 -2.7540 -4.1112 41 1 5.5637 -3.8541 -1.7512 42 1 6.7730 -4.7784 -2.6740 43 1 6.9950 -4.5179 -0.9273 44 1 9.3939 -2.1530 -2.6280 45 1 9.3080 -3.4906 -1.4568 46 1 8.2384 -4.3878 -3.9118 47 1 9.4427 -6.4805 -6.2133 48 1 8.1235 -1.2041 -0.8466 49 1 6.9324 -2.2910 -0.0795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716864219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:48 Heat of formation + Delta-G solvation = -125.560939 kcal Electronic energy + Delta-G solvation = -29608.213346 eV Core-core repulsion = 25503.532692 eV Total energy + Delta-G solvation = -4104.680654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51895 -39.54981 -38.23971 -37.09270 -36.53492 -36.46961 -34.35956 -34.04020 -32.19060 -30.95108 -30.47411 -28.02277 -27.34569 -25.35747 -24.97300 -24.06976 -23.73875 -20.61113 -20.41853 -20.16014 -19.24879 -19.00906 -17.83265 -17.60850 -17.31575 -17.15811 -16.55040 -16.45146 -15.75880 -15.62691 -15.48867 -15.22930 -15.06483 -14.88642 -14.53172 -14.14532 -14.05836 -13.94609 -13.85884 -13.44114 -13.38470 -13.29223 -13.26044 -13.13901 -13.00337 -12.91691 -12.81891 -12.76291 -12.70566 -12.62698 -12.38544 -12.13367 -12.08224 -11.72684 -11.59882 -11.48697 -11.39991 -11.04468 -10.91117 -10.54823 -9.71138 -8.95175 -7.93312 -5.19908 -0.80000 1.35016 1.49272 1.49560 1.57649 1.58623 1.96636 2.57528 2.75969 3.16471 3.21866 3.40447 3.53652 3.63760 3.70372 3.71024 3.84992 3.90534 4.02779 4.21230 4.23649 4.28603 4.34609 4.39345 4.42915 4.62237 4.69994 4.72138 4.79017 4.82225 4.84981 4.87017 4.93286 5.01560 5.06158 5.13295 5.14233 5.24177 5.24670 5.28508 5.37831 5.51584 5.53569 5.85445 6.30016 6.44407 6.98890 7.37958 8.13025 8.38989 9.29840 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.002118 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.655192 B =13213.975427 C =13496.293003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.616 4.616 3 S 2.615 3.385 4 O -0.993 6.993 5 O -0.977 6.977 6 N -1.107 6.107 7 C 0.141 3.859 8 H 0.138 0.862 9 C -0.169 4.169 10 C 0.524 3.476 11 O -0.572 6.572 12 N -0.608 5.608 13 C 0.091 3.909 14 C -0.115 4.115 15 C -0.071 4.071 16 C -0.125 4.125 17 C 0.167 3.833 18 N -0.735 5.735 19 C -0.243 4.243 20 H 0.069 0.931 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.967 3.033 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.125 3.875 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.424 0.576 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.380 0.620 47 H 0.251 0.749 48 H 0.056 0.944 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.600 12.049 8.516 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.749 4.749 3 S 2.711 3.289 4 O -0.984 6.984 5 O -0.967 6.967 6 N -0.866 5.866 7 C 0.030 3.970 8 H 0.156 0.844 9 C -0.228 4.228 10 C 0.311 3.689 11 O -0.451 6.451 12 N -0.341 5.341 13 C -0.030 4.030 14 C -0.153 4.153 15 C -0.072 4.072 16 C -0.182 4.182 17 C 0.040 3.960 18 N -0.378 5.378 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.797 3.203 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.002 3.998 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.260 0.740 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.214 0.786 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.720 13.065 8.965 25.297 hybrid contribution 1.636 -1.207 -0.082 2.035 sum -18.084 11.858 8.882 23.378 Atomic orbital electron populations 1.21688 0.89772 1.06565 1.03854 1.30378 1.07843 1.22568 1.14095 1.04865 0.72286 0.78679 0.73117 1.93569 1.83227 1.75158 1.46456 1.93578 1.83360 1.73836 1.45926 1.55533 1.25875 1.77372 1.27795 1.20764 0.93448 0.95659 0.87164 0.84432 1.22293 1.03699 0.97941 0.98856 1.20745 0.85639 0.79220 0.83284 1.90695 1.60091 1.68216 1.26114 1.48541 1.35913 1.28537 1.21139 1.22832 0.97341 1.00777 0.82030 1.22804 0.97091 0.98935 0.96519 1.21637 0.95141 0.95341 0.95094 1.21684 0.99940 0.95271 1.01335 1.20692 0.93516 0.91593 0.90212 1.42449 1.05090 1.50838 1.39470 1.19562 0.86667 1.18845 1.12470 0.91278 1.25427 1.00301 1.00844 0.99658 1.69771 1.28854 1.35815 1.27050 0.85240 0.80226 0.78134 0.76741 1.21639 1.22130 1.19894 1.21859 0.90289 0.90451 0.97244 0.87956 0.91097 0.90319 0.82289 0.83222 0.74015 0.89435 0.92183 0.89109 0.87911 0.87456 0.91499 0.89509 0.90323 0.93462 0.92993 0.96643 0.96723 0.78605 0.93985 0.92546 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.92 71.98 0.71 -0.37 16 2 C -0.62 -4.24 6.68 71.98 0.48 -3.76 16 3 S 2.61 39.01 5.38 -56.49 -0.30 38.70 16 4 O -0.99 -22.64 18.08 -127.65 -2.31 -24.94 16 5 O -0.98 -19.14 17.21 -127.65 -2.20 -21.34 16 6 N -1.11 -17.11 5.31 -172.52 -0.92 -18.02 16 7 C 0.14 2.02 2.39 44.25 0.11 2.12 16 8 H 0.14 0.90 6.51 -2.39 -0.02 0.88 16 9 C -0.17 -2.41 9.41 71.98 0.68 -1.73 16 10 C 0.52 10.97 7.04 87.66 0.62 11.59 16 11 O -0.57 -16.60 16.47 -3.03 -0.05 -16.65 16 12 N -0.61 -11.97 3.32 -811.36 -2.70 -14.66 16 13 C 0.09 1.33 5.95 86.93 0.52 1.84 16 14 C -0.12 -2.65 5.74 32.06 0.18 -2.47 16 15 C -0.07 -1.91 0.61 -51.00 -0.03 -1.94 16 16 C -0.13 -3.22 8.28 71.98 0.60 -2.62 16 17 C 0.17 6.19 5.08 86.38 0.44 6.62 16 18 N -0.73 -34.53 5.15 -343.47 -1.77 -36.30 16 19 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 20 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.96 -56.17 13.06 21.65 0.28 -55.89 16 23 Si 0.97 44.95 29.55 68.60 2.03 46.97 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 C 0.13 3.05 6.05 86.73 0.52 3.58 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.16 0.27 7.44 -2.39 -0.02 0.25 16 32 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.42 7.40 8.09 -96.74 -0.78 6.62 16 34 H 0.09 1.01 7.05 -2.38 -0.02 1.00 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 1.26 7.53 -2.39 -0.02 1.24 16 37 H 0.10 0.97 7.69 -2.39 -0.02 0.95 16 38 H 0.11 1.01 6.60 -2.39 -0.02 0.99 16 39 H 0.07 1.73 8.02 -2.39 -0.02 1.71 16 40 H 0.09 2.10 8.04 -2.38 -0.02 2.08 16 41 H 0.08 1.50 7.41 -2.39 -0.02 1.48 16 42 H 0.05 1.49 6.69 -2.39 -0.02 1.48 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.02 0.60 8.10 -2.38 -0.02 0.58 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.38 18.47 6.21 -92.71 -0.58 17.89 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.06 1.56 7.82 -2.39 -0.02 1.54 16 49 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 Total: -1.00 -77.41 401.67 -2.20 -79.61 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.40 Total: 25.28 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.13 Total: -2.77 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.10 Total: -124.87 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -4.56 Total: -62.93 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 39.01 SS G_CDS: -0.30 Total: 38.70 kcal Total: -77.41 -2.20 -79.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716864219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.947 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds