Wall clock time and date at job start Wed Apr 1 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81406 * 109.47184 * 2 1 4 4 O 1.42097 * 110.54079 * 68.37232 * 3 2 1 5 5 O 1.42103 * 110.54133 * 291.62580 * 3 2 1 6 6 N 1.65593 * 104.45317 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00005 * 270.00061 * 6 3 2 8 8 C 1.46496 * 120.00179 * 89.99700 * 6 3 2 9 9 C 1.50700 * 109.47205 * 265.00180 * 8 6 3 10 10 O 1.21280 * 120.00226 * 0.02562 * 9 8 6 11 11 N 1.34783 * 119.99817 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99671 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46232 * 35.02597 * 12 11 9 14 14 C 1.53035 * 109.45643 * 275.06540 * 12 11 9 15 15 C 1.53186 * 109.31629 * 301.34438 * 14 12 11 16 16 N 1.46928 * 108.77616 * 305.36966 * 15 14 12 17 17 C 1.36942 * 120.62743 * 233.87916 * 16 15 14 18 18 H 1.08003 * 119.99634 * 150.66767 * 17 16 15 19 19 C 1.38807 * 120.00280 * 330.66589 * 17 16 15 20 20 N 1.31616 * 119.99974 * 160.88596 * 19 17 16 21 21 Si 1.86803 * 120.00261 * 340.88818 * 19 17 16 22 22 H 1.48500 * 109.47214 * 92.35391 * 21 19 17 23 23 H 1.48499 * 109.47277 * 212.35863 * 21 19 17 24 24 H 1.48503 * 109.46657 * 332.36035 * 21 19 17 25 25 C 1.46920 * 118.73898 * 53.60851 * 16 15 14 26 26 H 1.08996 * 109.58942 * 66.17895 * 25 16 15 27 27 C 1.53005 * 109.58728 * 186.46475 * 25 16 15 28 28 C 1.53039 * 109.45705 * 154.99764 * 12 11 9 29 29 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47340 * 299.99553 * 1 2 3 31 31 H 1.09001 * 109.47621 * 60.00258 * 1 2 3 32 32 H 1.08999 * 109.47742 * 240.00113 * 2 1 3 33 33 H 1.09001 * 109.47621 * 119.99742 * 2 1 3 34 34 H 1.09004 * 109.47241 * 270.00206 * 7 6 3 35 35 H 1.09007 * 109.46905 * 29.99657 * 7 6 3 36 36 H 1.08993 * 109.47382 * 149.99458 * 7 6 3 37 37 H 1.09000 * 109.47150 * 145.00119 * 8 6 3 38 38 H 1.09001 * 109.46984 * 25.00116 * 8 6 3 39 39 H 0.96993 * 120.00026 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.50100 * 61.30190 * 14 12 11 41 41 H 1.09004 * 109.49544 * 181.39179 * 14 12 11 42 42 H 1.09005 * 109.59062 * 185.57838 * 15 14 12 43 43 H 1.09004 * 109.58623 * 65.15416 * 15 14 12 44 44 H 0.97003 * 120.00199 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47001 * 59.99318 * 27 25 16 46 46 H 1.09001 * 109.47299 * 179.97438 * 27 25 16 47 47 H 1.09007 * 109.46604 * 299.99606 * 27 25 16 48 48 H 1.09001 * 109.50156 * 298.70550 * 28 12 11 49 49 H 1.08996 * 109.52059 * 178.61711 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5012 1.2677 8 6 4.5134 1.5015 -1.2697 9 6 4.7464 0.0602 -1.6431 10 8 4.3427 -0.8263 -0.9206 11 7 5.4035 -0.2436 -2.7800 12 6 5.6296 -1.6448 -3.1432 13 1 4.7754 -2.2441 -2.8279 14 6 6.8940 -2.1542 -2.4477 15 6 8.0863 -1.2884 -2.8664 16 7 8.1686 -1.2743 -4.3333 17 6 9.3302 -1.6211 -4.9703 18 1 9.2947 -2.0636 -5.9549 19 6 10.5531 -1.4039 -4.3506 20 7 11.6225 -2.0531 -4.7595 21 14 10.6811 -0.1905 -2.9362 22 1 10.4942 -0.9082 -1.6497 23 1 12.0199 0.4519 -2.9547 24 1 9.6309 0.8496 -3.0798 25 6 6.9791 -0.8869 -5.1038 26 1 6.7494 0.1623 -4.9184 27 6 7.2434 -1.0981 -6.5960 28 6 5.7991 -1.7573 -4.6600 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.7854 2.5090 1.5825 35 1 3.8829 1.0407 2.0276 36 1 5.4181 0.9060 1.1370 37 1 5.4722 2.0090 -1.1638 38 1 3.9285 1.9889 -2.0498 39 1 5.7260 0.4654 -3.3580 40 1 6.7635 -2.0956 -1.3671 41 1 7.0765 -3.1891 -2.7369 42 1 9.0044 -1.7060 -2.4529 43 1 7.9468 -0.2718 -2.4985 44 1 12.4772 -1.9011 -4.3268 45 1 7.4680 -2.1487 -6.7800 46 1 6.3598 -0.8106 -7.1658 47 1 8.0906 -0.4858 -6.9051 48 1 4.8894 -1.4161 -5.1542 49 1 5.9918 -2.7958 -4.9290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724992181.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:26 Heat of formation + Delta-G solvation = -76.385143 kcal Electronic energy + Delta-G solvation = -30704.742691 eV Core-core repulsion = 26602.194459 eV Total energy + Delta-G solvation = -4102.548232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.17190 -38.22095 -37.40570 -36.31303 -35.91735 -34.51037 -33.39139 -32.43783 -31.79603 -30.57808 -28.67562 -26.68232 -25.61380 -24.84671 -24.12229 -22.71120 -21.34965 -20.62833 -19.12853 -18.97090 -18.09919 -17.53904 -16.83093 -16.52867 -16.46850 -15.70442 -15.48557 -15.15408 -14.87062 -14.61542 -14.40223 -14.26861 -13.82653 -13.72334 -13.52314 -13.37087 -13.14497 -13.03268 -12.76475 -12.58178 -12.42322 -12.36104 -12.00038 -11.96748 -11.86823 -11.82759 -11.75670 -11.63634 -11.34132 -11.16138 -10.94723 -10.71811 -10.45259 -10.34138 -10.25826 -10.06628 -9.69277 -9.45180 -9.18922 -8.96329 -8.63242 -7.00191 -5.99357 -3.37796 -0.01001 2.23221 2.53571 3.21311 3.26886 3.41524 3.44244 3.56363 3.87336 4.23991 4.46579 4.47446 4.51529 4.65710 4.80429 4.89517 4.96713 5.08401 5.13899 5.17376 5.25448 5.33777 5.35127 5.45526 5.50252 5.52049 5.60567 5.66915 5.67169 5.83809 5.93865 5.99754 6.06402 6.17066 6.23217 6.29609 6.32033 6.39440 6.56513 6.62295 6.73432 6.88117 6.96661 7.53102 7.92251 8.17316 8.30244 8.88664 9.67473 10.04115 11.16287 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.003065 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.639088 B = 9134.072393 C = 9840.851502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.620 4.620 3 S 2.609 3.391 4 O -0.955 6.955 5 O -0.957 6.957 6 N -0.982 5.982 7 C 0.098 3.902 8 C 0.092 3.908 9 C 0.487 3.513 10 O -0.541 6.541 11 N -0.713 5.713 12 C 0.154 3.846 13 H 0.079 0.921 14 C -0.145 4.145 15 C 0.130 3.870 16 N -0.602 5.602 17 C -0.260 4.260 18 H 0.091 0.909 19 C 0.025 3.975 20 N -0.909 5.909 21 Si 0.884 3.116 22 H -0.291 1.291 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.172 3.828 26 H 0.025 0.975 27 C -0.138 4.138 28 C -0.141 4.141 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.403 0.597 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.023 0.977 44 H 0.262 0.738 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.040 5.441 7.799 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.751 4.751 3 S 2.702 3.298 4 O -0.945 6.945 5 O -0.948 6.948 6 N -0.818 5.818 7 C -0.047 4.047 8 C -0.038 4.038 9 C 0.271 3.729 10 O -0.419 6.419 11 N -0.366 5.366 12 C 0.050 3.950 13 H 0.097 0.903 14 C -0.185 4.185 15 C 0.004 3.996 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.109 0.891 19 C -0.174 4.174 20 N -0.552 5.552 21 Si 0.715 3.285 22 H -0.218 1.218 23 H -0.233 1.233 24 H -0.197 1.197 25 C 0.066 3.934 26 H 0.043 0.957 27 C -0.195 4.195 28 C -0.180 4.180 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.239 0.761 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.578 5.595 8.321 21.997 hybrid contribution 0.787 0.074 0.631 1.012 sum -18.791 5.670 8.952 21.573 Atomic orbital electron populations 1.21526 0.90934 1.05032 1.03080 1.30440 1.06211 1.25733 1.12667 1.05177 0.72718 0.77656 0.74211 1.93591 1.82941 1.72889 1.45084 1.93575 1.82965 1.73061 1.45169 1.57058 1.24684 1.89079 1.10972 1.21477 0.97959 1.02154 0.83092 1.21333 1.01067 0.94430 0.86939 1.21281 0.78248 0.91954 0.81397 1.90659 1.51347 1.49225 1.50688 1.46224 1.56964 1.09763 1.23618 1.20914 0.97876 0.81021 0.95233 0.90338 1.22372 0.95804 1.01129 0.99215 1.21280 0.96810 0.96295 0.85212 1.44451 1.09509 1.78764 0.99912 1.18918 0.81856 1.34431 1.03581 0.89109 1.25318 0.95309 0.98644 0.98153 1.69812 1.00186 1.41714 1.43487 0.86938 0.76105 0.83079 0.82392 1.21843 1.23295 1.19727 1.20402 0.86705 0.94250 0.92085 0.95724 1.21812 1.00415 1.02680 0.94593 1.22376 0.99328 1.02783 0.93535 0.89987 0.91204 0.91138 0.84486 0.84903 0.92040 0.91009 0.90671 0.86638 0.85771 0.76118 0.92389 0.90794 0.91065 0.95921 0.92774 0.92268 0.94031 0.91596 0.92027 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.92 37.15 0.37 -0.74 16 2 C -0.62 -5.54 6.43 37.15 0.24 -5.30 16 3 S 2.61 27.99 5.38 -107.50 -0.58 27.41 16 4 O -0.95 -12.33 17.09 -57.54 -0.98 -13.32 16 5 O -0.96 -12.35 16.53 -57.54 -0.95 -13.31 16 6 N -0.98 -9.93 2.61 -123.05 -0.32 -10.25 16 7 C 0.10 0.87 10.20 59.85 0.61 1.48 16 8 C 0.09 0.90 6.12 -5.20 -0.03 0.86 16 9 C 0.49 5.97 7.86 -10.98 -0.09 5.88 16 10 O -0.54 -7.73 14.67 5.56 0.08 -7.64 16 11 N -0.71 -8.99 4.26 -53.76 -0.23 -9.22 16 12 C 0.15 2.20 2.78 -67.89 -0.19 2.01 16 13 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 14 C -0.15 -2.45 5.77 -26.62 -0.15 -2.61 16 15 C 0.13 2.62 3.94 -3.71 -0.01 2.60 16 16 N -0.60 -12.86 2.75 -164.77 -0.45 -13.31 16 17 C -0.26 -6.71 9.04 -15.06 -0.14 -6.85 16 18 H 0.09 2.49 6.40 -52.48 -0.34 2.16 16 19 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 20 N -0.91 -26.98 13.97 55.49 0.78 -26.21 16 21 Si 0.88 21.56 24.35 -169.99 -4.14 17.42 16 22 H -0.29 -6.96 6.63 56.52 0.37 -6.59 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.27 -6.37 6.63 56.52 0.37 -6.00 16 25 C 0.17 2.92 3.19 -67.60 -0.22 2.70 16 26 H 0.03 0.40 6.64 -51.93 -0.34 0.05 16 27 C -0.14 -2.27 7.95 37.16 0.30 -1.98 16 28 C -0.14 -1.99 5.08 -26.61 -0.14 -2.13 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.31 7.21 -51.92 -0.37 0.94 16 33 H 0.13 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 7.79 -51.92 -0.40 0.16 16 36 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.12 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.12 1.08 6.81 -51.93 -0.35 0.73 16 39 H 0.40 4.62 6.87 -40.82 -0.28 4.34 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.64 4.62 -51.93 -0.24 1.40 16 43 H 0.02 0.45 6.64 -51.93 -0.34 0.11 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.04 7.43 -51.93 -0.39 0.66 16 46 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.21 7.63 -51.93 -0.40 0.81 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -33.82 387.02 -8.62 -42.43 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.11 Total: 3.65 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 0.46 Total: -3.47 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.23 Total: -59.00 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.85 Total: -34.27 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Atomic # 16 Polarization: 27.99 SS G_CDS: -0.58 Total: 27.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.82 -8.62 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724992181.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.954 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds