Wall clock time and date at job start Wed Apr 1 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81406 * 109.47184 * 2 1 4 4 O 1.42097 * 110.54079 * 68.37232 * 3 2 1 5 5 O 1.42103 * 110.54133 * 291.62580 * 3 2 1 6 6 N 1.65593 * 104.45317 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00005 * 270.00061 * 6 3 2 8 8 C 1.46496 * 120.00179 * 89.99700 * 6 3 2 9 9 C 1.50700 * 109.47205 * 265.00180 * 8 6 3 10 10 O 1.21280 * 120.00226 * 0.02562 * 9 8 6 11 11 N 1.34783 * 119.99817 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99671 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46232 * 35.02597 * 12 11 9 14 14 C 1.53035 * 109.45643 * 275.06540 * 12 11 9 15 15 C 1.53186 * 109.31629 * 301.34438 * 14 12 11 16 16 N 1.46928 * 108.77616 * 305.36966 * 15 14 12 17 17 C 1.36942 * 120.62743 * 233.87916 * 16 15 14 18 18 H 1.08003 * 119.99634 * 150.66767 * 17 16 15 19 19 C 1.38807 * 120.00280 * 330.66589 * 17 16 15 20 20 N 1.31616 * 119.99974 * 160.88596 * 19 17 16 21 21 Si 1.86803 * 120.00261 * 340.88818 * 19 17 16 22 22 H 1.48500 * 109.47214 * 92.35391 * 21 19 17 23 23 H 1.48499 * 109.47277 * 212.35863 * 21 19 17 24 24 H 1.48503 * 109.46657 * 332.36035 * 21 19 17 25 25 C 1.46920 * 118.73898 * 53.60851 * 16 15 14 26 26 H 1.08996 * 109.58942 * 66.17895 * 25 16 15 27 27 C 1.53005 * 109.58728 * 186.46475 * 25 16 15 28 28 C 1.53039 * 109.45705 * 154.99764 * 12 11 9 29 29 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47340 * 299.99553 * 1 2 3 31 31 H 1.09001 * 109.47621 * 60.00258 * 1 2 3 32 32 H 1.08999 * 109.47742 * 240.00113 * 2 1 3 33 33 H 1.09001 * 109.47621 * 119.99742 * 2 1 3 34 34 H 1.09004 * 109.47241 * 270.00206 * 7 6 3 35 35 H 1.09007 * 109.46905 * 29.99657 * 7 6 3 36 36 H 1.08993 * 109.47382 * 149.99458 * 7 6 3 37 37 H 1.09000 * 109.47150 * 145.00119 * 8 6 3 38 38 H 1.09001 * 109.46984 * 25.00116 * 8 6 3 39 39 H 0.96993 * 120.00026 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.50100 * 61.30190 * 14 12 11 41 41 H 1.09004 * 109.49544 * 181.39179 * 14 12 11 42 42 H 1.09005 * 109.59062 * 185.57838 * 15 14 12 43 43 H 1.09004 * 109.58623 * 65.15416 * 15 14 12 44 44 H 0.97003 * 120.00199 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47001 * 59.99318 * 27 25 16 46 46 H 1.09001 * 109.47299 * 179.97438 * 27 25 16 47 47 H 1.09007 * 109.46604 * 299.99606 * 27 25 16 48 48 H 1.09001 * 109.50156 * 298.70550 * 28 12 11 49 49 H 1.08996 * 109.52059 * 178.61711 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5012 1.2677 8 6 4.5134 1.5015 -1.2697 9 6 4.7464 0.0602 -1.6431 10 8 4.3427 -0.8263 -0.9206 11 7 5.4035 -0.2436 -2.7800 12 6 5.6296 -1.6448 -3.1432 13 1 4.7754 -2.2441 -2.8279 14 6 6.8940 -2.1542 -2.4477 15 6 8.0863 -1.2884 -2.8664 16 7 8.1686 -1.2743 -4.3333 17 6 9.3302 -1.6211 -4.9703 18 1 9.2947 -2.0636 -5.9549 19 6 10.5531 -1.4039 -4.3506 20 7 11.6225 -2.0531 -4.7595 21 14 10.6811 -0.1905 -2.9362 22 1 10.4942 -0.9082 -1.6497 23 1 12.0199 0.4519 -2.9547 24 1 9.6309 0.8496 -3.0798 25 6 6.9791 -0.8869 -5.1038 26 1 6.7494 0.1623 -4.9184 27 6 7.2434 -1.0981 -6.5960 28 6 5.7991 -1.7573 -4.6600 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.7854 2.5090 1.5825 35 1 3.8829 1.0407 2.0276 36 1 5.4181 0.9060 1.1370 37 1 5.4722 2.0090 -1.1638 38 1 3.9285 1.9889 -2.0498 39 1 5.7260 0.4654 -3.3580 40 1 6.7635 -2.0956 -1.3671 41 1 7.0765 -3.1891 -2.7369 42 1 9.0044 -1.7060 -2.4529 43 1 7.9468 -0.2718 -2.4985 44 1 12.4772 -1.9011 -4.3268 45 1 7.4680 -2.1487 -6.7800 46 1 6.3598 -0.8106 -7.1658 47 1 8.0906 -0.4858 -6.9051 48 1 4.8894 -1.4161 -5.1542 49 1 5.9918 -2.7958 -4.9290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724992181.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:25 Heat of formation + Delta-G solvation = -102.051747 kcal Electronic energy + Delta-G solvation = -30705.855678 eV Core-core repulsion = 26602.194459 eV Total energy + Delta-G solvation = -4103.661219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.24024 -39.49245 -38.30031 -37.19802 -36.79287 -35.83543 -34.11237 -34.01900 -33.22647 -32.06913 -29.55368 -28.05695 -26.72323 -26.19579 -24.80180 -24.28247 -22.47260 -21.92229 -20.37151 -19.93374 -18.91576 -18.45479 -18.33196 -17.55792 -17.38185 -17.22036 -16.59807 -16.37196 -16.17100 -15.67244 -15.36834 -15.29300 -15.12774 -15.00418 -14.60965 -14.23497 -14.19614 -14.07817 -13.89447 -13.64124 -13.45478 -13.38865 -13.28151 -13.27822 -13.23028 -12.79963 -12.66924 -12.62144 -12.53398 -12.41010 -12.21282 -12.12529 -11.83881 -11.70993 -11.68521 -11.38351 -11.15697 -11.11304 -10.67697 -9.99978 -9.98695 -8.81604 -8.09999 -5.42380 -0.80064 1.31937 1.41442 1.45553 1.50124 1.61262 2.27241 2.46175 2.77414 3.06880 3.09904 3.34608 3.55417 3.75003 3.80824 3.86065 3.94374 3.98795 4.15666 4.28490 4.31134 4.34091 4.42447 4.49385 4.57431 4.60529 4.66526 4.70049 4.84359 4.86716 4.90547 4.94629 4.96859 4.98075 5.03390 5.07123 5.09232 5.13821 5.22658 5.34942 5.50772 5.56308 5.63553 5.96103 6.24460 6.58915 6.99144 7.23840 7.70797 8.09924 9.09701 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.003065 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.639088 B = 9134.072393 C = 9840.851502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.608 4.608 3 S 2.615 3.385 4 O -0.981 6.981 5 O -0.982 6.982 6 N -0.985 5.985 7 C 0.091 3.909 8 C 0.091 3.909 9 C 0.488 3.512 10 O -0.562 6.562 11 N -0.712 5.712 12 C 0.162 3.838 13 H 0.087 0.913 14 C -0.136 4.136 15 C 0.128 3.872 16 N -0.614 5.614 17 C -0.232 4.232 18 H 0.065 0.935 19 C -0.040 4.040 20 N -0.963 5.963 21 Si 0.942 3.058 22 H -0.287 1.287 23 H -0.320 1.320 24 H -0.251 1.251 25 C 0.163 3.837 26 H 0.050 0.950 27 C -0.133 4.133 28 C -0.129 4.129 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.410 0.590 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.257 0.743 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.096 0.904 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.816 6.571 8.494 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.740 4.740 3 S 2.711 3.289 4 O -0.971 6.971 5 O -0.972 6.972 6 N -0.821 5.821 7 C -0.054 4.054 8 C -0.038 4.038 9 C 0.273 3.727 10 O -0.441 6.441 11 N -0.365 5.365 12 C 0.057 3.943 13 H 0.105 0.895 14 C -0.176 4.176 15 C 0.004 3.996 16 N -0.339 5.339 17 C -0.362 4.362 18 H 0.082 0.918 19 C -0.233 4.233 20 N -0.610 5.610 21 Si 0.772 3.228 22 H -0.215 1.215 23 H -0.249 1.249 24 H -0.175 1.175 25 C 0.058 3.942 26 H 0.067 0.933 27 C -0.191 4.191 28 C -0.168 4.168 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.414 6.779 9.024 25.096 hybrid contribution 1.546 -0.362 0.369 1.630 sum -20.868 6.417 9.393 23.768 Atomic orbital electron populations 1.21687 0.89911 1.06224 1.03782 1.30323 1.07188 1.23532 1.12989 1.04863 0.72728 0.78190 0.73106 1.93554 1.83447 1.74204 1.45943 1.93536 1.83443 1.74334 1.45919 1.56999 1.24503 1.89084 1.11517 1.21622 0.98024 1.02868 0.82837 1.21472 1.02378 0.92851 0.87079 1.21708 0.77428 0.92785 0.80769 1.90655 1.52063 1.50116 1.51219 1.46151 1.57182 1.09083 1.24057 1.20719 0.96478 0.82216 0.94852 0.89541 1.22245 0.95836 0.99900 0.99668 1.21249 0.96792 0.97285 0.84322 1.44601 1.09448 1.79125 1.00767 1.18895 0.83415 1.31604 1.02261 0.91758 1.25918 0.95292 1.00814 1.01323 1.69953 1.00735 1.44255 1.46068 0.85979 0.75630 0.81299 0.79843 1.21499 1.24921 1.17508 1.20731 0.85737 0.96061 0.91623 0.93282 1.21763 1.01235 1.00952 0.95111 1.22251 0.99252 1.01663 0.93638 0.88531 0.90456 0.90702 0.84729 0.83990 0.91165 0.90405 0.90558 0.84473 0.84552 0.75242 0.92058 0.91974 0.94288 0.94655 0.93386 0.94254 0.90022 0.94114 0.88566 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.92 71.98 0.71 -1.29 16 2 C -0.61 -9.43 6.43 71.98 0.46 -8.97 16 3 S 2.62 51.14 5.38 -56.49 -0.30 50.83 16 4 O -0.98 -23.98 17.09 -127.65 -2.18 -26.16 16 5 O -0.98 -23.52 16.53 -127.65 -2.11 -25.63 16 6 N -0.99 -17.46 2.61 -543.22 -1.42 -18.87 16 7 C 0.09 1.41 10.20 127.77 1.30 2.72 16 8 C 0.09 1.48 6.12 85.63 0.52 2.00 16 9 C 0.49 10.27 7.86 87.66 0.69 10.96 16 10 O -0.56 -14.33 14.67 -3.03 -0.04 -14.37 16 11 N -0.71 -15.17 4.26 -442.40 -1.89 -17.06 16 12 C 0.16 4.10 2.78 45.01 0.13 4.22 16 13 H 0.09 2.15 7.58 -2.39 -0.02 2.13 16 14 C -0.14 -4.34 5.77 30.67 0.18 -4.16 16 15 C 0.13 4.97 3.94 86.36 0.34 5.32 16 16 N -0.61 -25.50 2.75 -675.22 -1.85 -27.35 16 17 C -0.23 -12.15 9.04 84.03 0.76 -11.39 16 18 H 0.06 3.66 6.40 -2.91 -0.02 3.64 16 19 C -0.04 -2.23 5.24 84.86 0.44 -1.79 16 20 N -0.96 -59.45 13.97 21.65 0.30 -59.15 16 21 Si 0.94 45.05 24.35 68.60 1.67 46.72 16 22 H -0.29 -13.41 6.63 99.48 0.66 -12.76 16 23 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 24 H -0.25 -10.95 6.63 99.48 0.66 -10.29 16 25 C 0.16 5.08 3.19 44.98 0.14 5.22 16 26 H 0.05 1.35 6.64 -2.39 -0.02 1.34 16 27 C -0.13 -4.17 7.95 71.98 0.57 -3.60 16 28 C -0.13 -3.20 5.08 30.67 0.16 -3.04 16 29 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.13 2.23 7.21 -2.39 -0.02 2.21 16 33 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 1.09 7.79 -2.38 -0.02 1.07 16 36 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 37 H 0.14 1.64 8.11 -2.39 -0.02 1.62 16 38 H 0.14 1.91 6.81 -2.39 -0.02 1.90 16 39 H 0.41 7.57 6.87 -92.71 -0.64 6.94 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.04 1.77 4.62 -2.38 -0.01 1.76 16 43 H 0.04 1.29 6.64 -2.39 -0.02 1.28 16 44 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.04 1.36 7.43 -2.39 -0.02 1.35 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.04 1.46 7.63 -2.38 -0.02 1.44 16 48 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -74.52 387.02 -1.19 -75.71 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.22 Total: 19.12 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 6.41 Total: -3.79 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.85 Total: -122.44 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -4.34 Total: -66.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Atomic # 16 Polarization: 51.14 SS G_CDS: -0.30 Total: 50.83 kcal Total: -74.52 -1.19 -75.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724992181.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.342 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds