Wall clock time and date at job start Wed Apr 1 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47017 * 2 1 4 4 O 1.42101 * 110.54149 * 291.62300 * 3 2 1 5 5 O 1.42097 * 110.54278 * 68.37577 * 3 2 1 6 6 N 1.65600 * 104.44877 * 179.97438 * 3 2 1 7 7 C 1.46498 * 119.99858 * 269.99743 * 6 3 2 8 8 C 1.46500 * 119.99911 * 89.99916 * 6 3 2 9 9 C 1.50700 * 109.47365 * 95.00120 * 8 6 3 10 10 O 1.21286 * 119.99733 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00074 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99583 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.46390 * 35.02920 * 12 11 9 14 14 C 1.53043 * 109.45765 * 275.06722 * 12 11 9 15 15 C 1.53195 * 109.31069 * 178.61803 * 14 12 11 16 16 N 1.46924 * 108.77450 * 54.63780 * 15 14 12 17 17 C 1.36937 * 120.63136 * 126.37021 * 16 15 14 18 18 H 1.08003 * 119.99875 * 209.55630 * 17 16 15 19 19 C 1.38809 * 120.00235 * 29.55867 * 17 16 15 20 20 N 1.31621 * 119.99553 * 16.11221 * 19 17 16 21 21 Si 1.86793 * 120.00277 * 196.10721 * 19 17 16 22 22 H 1.48506 * 109.46870 * 94.02423 * 21 19 17 23 23 H 1.48499 * 109.47458 * 214.01987 * 21 19 17 24 24 H 1.48493 * 109.47426 * 334.02539 * 21 19 17 25 25 C 1.46924 * 118.73939 * 306.38949 * 16 15 14 26 26 H 1.09009 * 109.70315 * 293.75288 * 25 16 15 27 27 C 1.52998 * 109.59053 * 173.40016 * 25 16 15 28 28 C 1.53049 * 109.45792 * 155.00411 * 12 11 9 29 29 H 1.09004 * 109.47415 * 299.99599 * 1 2 3 30 30 H 1.09001 * 109.47278 * 60.00120 * 1 2 3 31 31 H 1.09011 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47195 * 239.99649 * 2 1 3 33 33 H 1.09001 * 109.47278 * 119.99880 * 2 1 3 34 34 H 1.09003 * 109.47289 * 90.00431 * 7 6 3 35 35 H 1.09004 * 109.47088 * 210.00099 * 7 6 3 36 36 H 1.08997 * 109.47604 * 329.99978 * 7 6 3 37 37 H 1.09000 * 109.46857 * 214.99894 * 8 6 3 38 38 H 1.08992 * 109.47270 * 334.99683 * 8 6 3 39 39 H 0.96994 * 120.00410 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.50105 * 298.56721 * 14 12 11 41 41 H 1.08992 * 109.50038 * 58.66536 * 14 12 11 42 42 H 1.08990 * 109.58574 * 294.84835 * 15 14 12 43 43 H 1.08998 * 109.58174 * 174.42069 * 15 14 12 44 44 H 0.97004 * 119.99738 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47183 * 300.70955 * 27 25 16 46 46 H 1.09001 * 109.47342 * 60.70686 * 27 25 16 47 47 H 1.08994 * 109.47371 * 180.71103 * 27 25 16 48 48 H 1.09002 * 109.49137 * 301.33408 * 28 12 11 49 49 H 1.08993 * 109.49678 * 61.39688 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 -1.2370 5 8 1.8385 2.3438 1.2370 6 7 3.7842 1.5653 0.0007 7 6 4.5134 1.5014 1.2698 8 6 4.5144 1.5010 -1.2677 9 6 4.9956 2.8795 -1.6409 10 8 4.7528 3.8228 -0.9182 11 7 5.6964 3.0639 -2.7771 12 6 6.1646 4.4041 -3.1396 13 1 6.4328 4.9517 -2.2362 14 6 5.0507 5.1512 -3.8767 15 6 5.5317 6.5637 -4.2236 16 7 6.7905 6.4635 -4.9745 17 6 6.9288 7.0790 -6.1899 18 1 7.5892 6.6606 -6.9351 19 6 6.2202 8.2407 -6.4643 20 7 5.6727 8.9249 -5.4822 21 14 6.0438 8.8328 -8.2271 22 1 4.7718 8.3199 -8.7965 23 1 6.0339 10.3176 -8.2519 24 1 7.1850 8.3318 -9.0342 25 6 7.8981 5.6901 -4.3968 26 1 8.2591 6.1831 -3.4941 27 6 9.0362 5.5856 -5.4140 28 6 7.3908 4.2874 -4.0480 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.6043 0.4618 1.5847 35 1 5.5072 1.9299 1.1398 36 1 3.9713 2.0650 2.0291 37 1 5.3700 0.8341 -1.1609 38 1 3.8543 1.1229 -2.0482 39 1 5.8915 2.3094 -3.3546 40 1 4.7991 4.6173 -4.7931 41 1 4.1698 5.2134 -3.2379 42 1 5.6973 7.1288 -3.3064 43 1 4.7810 7.0656 -4.8340 44 1 5.1779 9.7370 -5.6739 45 1 8.6720 5.0969 -6.3178 46 1 9.3958 6.5845 -5.6609 47 1 9.8515 5.0009 -4.9883 48 1 8.1752 3.7348 -3.5310 49 1 7.1172 3.7611 -4.9624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724992184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:36 Heat of formation + Delta-G solvation = -80.612825 kcal Electronic energy + Delta-G solvation = -29938.641105 eV Core-core repulsion = 25835.909547 eV Total energy + Delta-G solvation = -4102.731558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.77573 -37.77274 -37.32371 -36.17802 -35.89436 -34.46341 -33.56106 -32.38628 -31.38862 -29.82473 -28.52960 -26.34525 -25.66965 -24.63166 -24.15575 -22.03918 -21.16946 -20.03532 -19.34905 -18.95623 -18.04569 -17.37749 -16.76667 -16.48810 -16.17207 -15.77121 -15.17161 -14.94092 -14.79780 -14.34008 -14.24998 -13.91479 -13.65856 -13.61669 -13.29341 -13.14966 -13.11228 -12.91347 -12.76830 -12.67945 -12.41064 -12.23559 -12.00502 -11.82050 -11.72871 -11.55778 -11.18339 -11.06310 -10.92644 -10.87649 -10.84635 -10.63148 -10.26479 -10.19900 -10.04019 -9.98903 -9.68358 -9.47724 -9.03738 -8.64534 -8.36968 -6.59294 -5.72282 -3.16467 -0.07742 2.30498 2.79859 3.36178 3.41827 3.47757 3.49336 3.66526 3.81267 4.11942 4.34929 4.40391 4.53161 4.73328 4.82440 4.88631 5.00361 5.13713 5.19032 5.23210 5.32622 5.42508 5.45947 5.47216 5.59757 5.64710 5.65915 5.82112 6.04778 6.09596 6.19432 6.30321 6.34579 6.46138 6.48886 6.55948 6.70455 6.89288 6.96178 7.07349 7.13095 7.45093 7.72652 7.77465 7.87274 8.45078 8.52073 9.27121 9.91009 10.48465 11.36327 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002509 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.351916 B =11159.285916 C =11939.403272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.635 4.635 3 S 2.606 3.394 4 O -0.940 6.940 5 O -0.947 6.947 6 N -0.985 5.985 7 C 0.087 3.913 8 C 0.105 3.895 9 C 0.491 3.509 10 O -0.525 6.525 11 N -0.724 5.724 12 C 0.151 3.849 13 H 0.080 0.920 14 C -0.148 4.148 15 C 0.175 3.825 16 N -0.587 5.587 17 C -0.252 4.252 18 H 0.070 0.930 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.171 3.829 26 H 0.026 0.974 27 C -0.135 4.135 28 C -0.133 4.133 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.394 0.606 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.087 0.913 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.053 0.947 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -24.349 11.132 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.764 4.764 3 S 2.698 3.302 4 O -0.930 6.930 5 O -0.937 6.937 6 N -0.821 5.821 7 C -0.058 4.058 8 C -0.025 4.025 9 C 0.274 3.726 10 O -0.400 6.400 11 N -0.375 5.375 12 C 0.048 3.952 13 H 0.098 0.902 14 C -0.188 4.188 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.381 4.381 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.063 3.937 26 H 0.044 0.956 27 C -0.192 4.192 28 C -0.173 4.173 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.227 0.773 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.157 -22.688 11.674 25.852 hybrid contribution 0.115 -0.778 -1.201 1.435 sum -4.042 -23.466 10.473 26.013 Atomic orbital electron populations 1.21513 0.90431 1.05022 1.03712 1.30598 1.07343 1.27031 1.11418 1.05383 0.72934 0.77179 0.74714 1.93646 1.82768 1.71664 1.44930 1.93583 1.82836 1.71977 1.45332 1.57086 1.24576 1.89547 1.10912 1.21584 0.98916 1.01117 0.84168 1.21143 0.99256 0.95943 0.86126 1.20993 0.78640 0.91381 0.81550 1.90730 1.55407 1.42694 1.51212 1.46288 1.56160 1.11607 1.23491 1.21037 0.94580 0.81483 0.98117 0.90154 1.22568 0.97148 1.00169 0.98905 1.20730 0.89026 0.90054 0.95274 1.44167 1.08027 1.58568 1.20311 1.19166 1.25754 1.03150 0.90073 0.91255 1.25109 1.01723 0.95653 0.97135 1.70039 1.38560 1.16288 1.29590 0.86310 0.77998 0.77702 0.84944 1.21551 1.21862 1.20456 1.20350 0.89097 0.89356 0.94853 0.95648 1.21788 0.96644 1.01710 0.99088 1.22374 0.95813 1.00478 0.98604 0.90900 0.90770 0.90001 0.85123 0.85129 0.92812 0.90422 0.89571 0.87359 0.87368 0.77280 0.92660 0.92680 0.96192 0.89435 0.93661 0.92780 0.91900 0.94375 0.92793 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.92 37.16 0.37 -0.51 16 2 C -0.64 -3.63 6.90 37.16 0.26 -3.37 16 3 S 2.61 28.67 5.37 -107.50 -0.58 28.09 16 4 O -0.94 -14.16 16.99 -57.54 -0.98 -15.13 16 5 O -0.95 -13.48 16.57 -57.54 -0.95 -14.43 16 6 N -0.98 -9.64 2.61 -123.06 -0.32 -9.96 16 7 C 0.09 0.71 10.65 59.85 0.64 1.35 16 8 C 0.11 0.94 5.72 -5.19 -0.03 0.91 16 9 C 0.49 7.15 7.86 -10.99 -0.09 7.06 16 10 O -0.53 -10.28 16.08 5.55 0.09 -10.19 16 11 N -0.72 -9.91 5.08 -53.76 -0.27 -10.18 16 12 C 0.15 2.68 2.42 -67.88 -0.16 2.51 16 13 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 14 C -0.15 -3.08 5.65 -26.61 -0.15 -3.23 16 15 C 0.18 4.38 5.29 -3.71 -0.02 4.36 16 16 N -0.59 -14.58 2.99 -164.78 -0.49 -15.08 16 17 C -0.25 -6.77 8.58 -15.06 -0.13 -6.90 16 18 H 0.07 1.81 6.22 -52.48 -0.33 1.48 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.66 11.25 55.49 0.62 -26.03 16 21 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.17 3.50 3.50 -67.60 -0.24 3.26 16 26 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 27 C -0.13 -2.47 7.95 37.16 0.30 -2.18 16 28 C -0.13 -2.20 4.84 -26.61 -0.13 -2.32 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.09 0.81 6.91 -51.93 -0.36 0.45 16 37 H 0.11 0.53 8.11 -51.93 -0.42 0.11 16 38 H 0.11 0.74 7.61 -51.93 -0.40 0.34 16 39 H 0.39 3.89 8.60 -40.82 -0.35 3.54 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 46 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -38.35 400.49 -9.74 -48.09 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.40 Total: 1.02 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.53 Total: 0.93 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.46 Total: -61.25 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.84 Total: -39.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 28.67 SS G_CDS: -0.58 Total: 28.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.35 -9.74 -48.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724992184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.519 kcal (2) G-P(sol) polarization free energy of solvation -38.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds