Wall clock time and date at job start Wed Apr 1 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47017 * 2 1 4 4 O 1.42101 * 110.54149 * 291.62300 * 3 2 1 5 5 O 1.42097 * 110.54278 * 68.37577 * 3 2 1 6 6 N 1.65600 * 104.44877 * 179.97438 * 3 2 1 7 7 C 1.46498 * 119.99858 * 269.99743 * 6 3 2 8 8 C 1.46500 * 119.99911 * 89.99916 * 6 3 2 9 9 C 1.50700 * 109.47365 * 95.00120 * 8 6 3 10 10 O 1.21286 * 119.99733 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00074 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99583 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.46390 * 35.02920 * 12 11 9 14 14 C 1.53043 * 109.45765 * 275.06722 * 12 11 9 15 15 C 1.53195 * 109.31069 * 178.61803 * 14 12 11 16 16 N 1.46924 * 108.77450 * 54.63780 * 15 14 12 17 17 C 1.36937 * 120.63136 * 126.37021 * 16 15 14 18 18 H 1.08003 * 119.99875 * 209.55630 * 17 16 15 19 19 C 1.38809 * 120.00235 * 29.55867 * 17 16 15 20 20 N 1.31621 * 119.99553 * 16.11221 * 19 17 16 21 21 Si 1.86793 * 120.00277 * 196.10721 * 19 17 16 22 22 H 1.48506 * 109.46870 * 94.02423 * 21 19 17 23 23 H 1.48499 * 109.47458 * 214.01987 * 21 19 17 24 24 H 1.48493 * 109.47426 * 334.02539 * 21 19 17 25 25 C 1.46924 * 118.73939 * 306.38949 * 16 15 14 26 26 H 1.09009 * 109.70315 * 293.75288 * 25 16 15 27 27 C 1.52998 * 109.59053 * 173.40016 * 25 16 15 28 28 C 1.53049 * 109.45792 * 155.00411 * 12 11 9 29 29 H 1.09004 * 109.47415 * 299.99599 * 1 2 3 30 30 H 1.09001 * 109.47278 * 60.00120 * 1 2 3 31 31 H 1.09011 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47195 * 239.99649 * 2 1 3 33 33 H 1.09001 * 109.47278 * 119.99880 * 2 1 3 34 34 H 1.09003 * 109.47289 * 90.00431 * 7 6 3 35 35 H 1.09004 * 109.47088 * 210.00099 * 7 6 3 36 36 H 1.08997 * 109.47604 * 329.99978 * 7 6 3 37 37 H 1.09000 * 109.46857 * 214.99894 * 8 6 3 38 38 H 1.08992 * 109.47270 * 334.99683 * 8 6 3 39 39 H 0.96994 * 120.00410 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.50105 * 298.56721 * 14 12 11 41 41 H 1.08992 * 109.50038 * 58.66536 * 14 12 11 42 42 H 1.08990 * 109.58574 * 294.84835 * 15 14 12 43 43 H 1.08998 * 109.58174 * 174.42069 * 15 14 12 44 44 H 0.97004 * 119.99738 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47183 * 300.70955 * 27 25 16 46 46 H 1.09001 * 109.47342 * 60.70686 * 27 25 16 47 47 H 1.08994 * 109.47371 * 180.71103 * 27 25 16 48 48 H 1.09002 * 109.49137 * 301.33408 * 28 12 11 49 49 H 1.08993 * 109.49678 * 61.39688 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 -1.2370 5 8 1.8385 2.3438 1.2370 6 7 3.7842 1.5653 0.0007 7 6 4.5134 1.5014 1.2698 8 6 4.5144 1.5010 -1.2677 9 6 4.9956 2.8795 -1.6409 10 8 4.7528 3.8228 -0.9182 11 7 5.6964 3.0639 -2.7771 12 6 6.1646 4.4041 -3.1396 13 1 6.4328 4.9517 -2.2362 14 6 5.0507 5.1512 -3.8767 15 6 5.5317 6.5637 -4.2236 16 7 6.7905 6.4635 -4.9745 17 6 6.9288 7.0790 -6.1899 18 1 7.5892 6.6606 -6.9351 19 6 6.2202 8.2407 -6.4643 20 7 5.6727 8.9249 -5.4822 21 14 6.0438 8.8328 -8.2271 22 1 4.7718 8.3199 -8.7965 23 1 6.0339 10.3176 -8.2519 24 1 7.1850 8.3318 -9.0342 25 6 7.8981 5.6901 -4.3968 26 1 8.2591 6.1831 -3.4941 27 6 9.0362 5.5856 -5.4140 28 6 7.3908 4.2874 -4.0480 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.6043 0.4618 1.5847 35 1 5.5072 1.9299 1.1398 36 1 3.9713 2.0650 2.0291 37 1 5.3700 0.8341 -1.1609 38 1 3.8543 1.1229 -2.0482 39 1 5.8915 2.3094 -3.3546 40 1 4.7991 4.6173 -4.7931 41 1 4.1698 5.2134 -3.2379 42 1 5.6973 7.1288 -3.3064 43 1 4.7810 7.0656 -4.8340 44 1 5.1779 9.7370 -5.6739 45 1 8.6720 5.0969 -6.3178 46 1 9.3958 6.5845 -5.6609 47 1 9.8515 5.0009 -4.9883 48 1 8.1752 3.7348 -3.5310 49 1 7.1172 3.7611 -4.9624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724992184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:35 Heat of formation + Delta-G solvation = -111.827848 kcal Electronic energy + Delta-G solvation = -29939.994690 eV Core-core repulsion = 25835.909547 eV Total energy + Delta-G solvation = -4104.085143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.01182 -39.33719 -38.25575 -37.09978 -36.78719 -35.95957 -34.21998 -34.03406 -33.02776 -31.48854 -29.51994 -27.91050 -26.80707 -26.08387 -24.75708 -23.75738 -22.61735 -21.43333 -20.95428 -19.85884 -18.86607 -18.49594 -18.09072 -17.62570 -17.25494 -17.12466 -16.65546 -16.06765 -15.73568 -15.65563 -15.53936 -15.16216 -15.05183 -14.84667 -14.59655 -14.40075 -14.19805 -13.97465 -13.78204 -13.41846 -13.37175 -13.33148 -13.20678 -12.97933 -12.73671 -12.67110 -12.61702 -12.60494 -12.48089 -12.40854 -12.35991 -12.05735 -11.84354 -11.71954 -11.56545 -11.49318 -11.35498 -11.05350 -10.56046 -10.00018 -9.90651 -8.65733 -7.83960 -5.31106 -0.81528 1.46688 1.48356 1.57336 1.57516 1.70870 2.28343 2.52540 2.96259 3.10577 3.32050 3.56701 3.58809 3.77373 3.86430 3.90764 3.97489 4.08635 4.27784 4.29517 4.39170 4.39462 4.44050 4.62210 4.69367 4.72567 4.74110 4.74829 4.82838 4.84622 4.94000 4.97600 5.04406 5.09062 5.10949 5.13241 5.17489 5.37979 5.45049 5.50003 5.56211 5.61969 5.69327 5.72755 6.42565 6.68852 7.15886 7.39461 7.88281 8.42032 9.23690 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002509 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.351916 B =11159.285916 C =11939.403272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.591 4.591 3 S 2.585 3.415 4 O -0.997 6.997 5 O -0.999 6.999 6 N -0.989 5.989 7 C 0.082 3.918 8 C 0.108 3.892 9 C 0.479 3.521 10 O -0.587 6.587 11 N -0.709 5.709 12 C 0.162 3.838 13 H 0.050 0.950 14 C -0.131 4.131 15 C 0.185 3.815 16 N -0.602 5.602 17 C -0.247 4.247 18 H 0.084 0.916 19 C -0.061 4.061 20 N -0.944 5.944 21 Si 0.966 3.034 22 H -0.290 1.290 23 H -0.301 1.301 24 H -0.260 1.260 25 C 0.157 3.843 26 H 0.007 0.993 27 C -0.125 4.125 28 C -0.114 4.114 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.419 0.581 40 H 0.063 0.937 41 H 0.032 0.968 42 H -0.018 1.018 43 H 0.050 0.950 44 H 0.246 0.754 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -30.002 10.191 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.725 4.725 3 S 2.683 3.317 4 O -0.987 6.987 5 O -0.990 6.990 6 N -0.825 5.825 7 C -0.062 4.062 8 C -0.021 4.021 9 C 0.265 3.735 10 O -0.466 6.466 11 N -0.362 5.362 12 C 0.056 3.944 13 H 0.068 0.932 14 C -0.172 4.172 15 C 0.058 3.942 16 N -0.326 5.326 17 C -0.377 4.377 18 H 0.101 0.899 19 C -0.255 4.255 20 N -0.590 5.590 21 Si 0.794 3.206 22 H -0.217 1.217 23 H -0.228 1.228 24 H -0.184 1.184 25 C 0.050 3.950 26 H 0.025 0.975 27 C -0.183 4.183 28 C -0.153 4.153 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.185 0.815 33 H 0.183 0.817 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.182 0.818 38 H 0.154 0.846 39 H 0.256 0.744 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.000 1.000 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.650 -28.363 10.713 30.435 hybrid contribution -0.348 0.917 -0.814 1.275 sum -2.998 -27.446 9.899 29.330 Atomic orbital electron populations 1.21736 0.90571 1.06757 1.03335 1.30244 1.06862 1.20452 1.14940 1.05697 0.73423 0.79779 0.72765 1.93571 1.83640 1.75035 1.46502 1.93512 1.83597 1.75182 1.46670 1.56960 1.24140 1.89694 1.11688 1.21738 0.97694 1.03690 0.83109 1.21470 1.01636 0.92518 0.86441 1.22281 0.77287 0.93348 0.80629 1.90718 1.57487 1.45321 1.53115 1.45990 1.55766 1.10490 1.23941 1.20596 0.93925 0.83219 0.96645 0.93216 1.22305 0.97559 0.98134 0.99178 1.20386 0.88957 0.91894 0.92933 1.44422 1.09110 1.58979 1.20081 1.19593 1.24579 1.02519 0.91033 0.89880 1.25943 1.02416 0.96365 1.00792 1.70231 1.40269 1.16814 1.31723 0.85262 0.78254 0.76434 0.80601 1.21685 1.22828 1.18391 1.20683 0.88771 0.90782 0.94718 0.97488 1.21701 0.96786 1.01086 0.98694 1.22160 0.95908 0.98031 0.99235 0.91444 0.91464 0.86926 0.81534 0.81735 0.87933 0.91157 0.92088 0.81845 0.84604 0.74371 0.91804 0.94885 0.99998 0.93117 0.94529 0.92437 0.94361 0.90188 0.88721 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.92 71.98 0.71 -0.75 16 2 C -0.59 -4.23 6.90 71.98 0.50 -3.74 16 3 S 2.58 55.45 5.37 -56.49 -0.30 55.15 16 4 O -1.00 -30.88 16.99 -127.65 -2.17 -33.05 16 5 O -1.00 -29.94 16.57 -127.65 -2.12 -32.05 16 6 N -0.99 -17.39 2.61 -543.24 -1.42 -18.80 16 7 C 0.08 1.19 10.65 127.77 1.36 2.55 16 8 C 0.11 1.57 5.72 85.63 0.49 2.05 16 9 C 0.48 13.43 7.86 87.66 0.69 14.12 16 10 O -0.59 -24.00 16.08 -3.05 -0.05 -24.04 16 11 N -0.71 -17.89 5.08 -442.38 -2.25 -20.14 16 12 C 0.16 5.67 2.42 45.02 0.11 5.78 16 13 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 14 C -0.13 -5.72 5.65 30.67 0.17 -5.54 16 15 C 0.19 9.88 5.29 86.36 0.46 10.34 16 16 N -0.60 -30.64 2.99 -675.25 -2.02 -32.65 16 17 C -0.25 -13.44 8.58 84.03 0.72 -12.72 16 18 H 0.08 4.24 6.22 -2.91 -0.02 4.22 16 19 C -0.06 -3.48 4.92 84.86 0.42 -3.07 16 20 N -0.94 -59.06 11.25 21.65 0.24 -58.82 16 21 Si 0.97 45.96 29.58 68.60 2.03 47.99 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.16 6.29 3.50 44.97 0.16 6.45 16 26 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 27 C -0.13 -4.28 7.95 71.98 0.57 -3.71 16 28 C -0.11 -3.46 4.84 30.67 0.15 -3.31 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.17 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 36 H 0.06 1.18 6.91 -2.39 -0.02 1.17 16 37 H 0.16 0.60 8.11 -2.39 -0.02 0.58 16 38 H 0.14 1.26 7.61 -2.39 -0.02 1.24 16 39 H 0.42 6.48 8.60 -92.71 -0.80 5.68 16 40 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 42 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 43 H 0.05 3.05 6.14 -2.39 -0.01 3.03 16 44 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 45 H 0.06 1.92 7.40 -2.39 -0.02 1.91 16 46 H 0.04 1.47 7.66 -2.39 -0.02 1.46 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -95.20 400.49 -1.40 -96.60 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.14 Total: 11.36 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.50 Total: 8.46 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -5.44 Total: -130.41 kcal Atomic # 8 Polarization: -84.81 SS G_CDS: -4.33 Total: -89.14 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 55.45 SS G_CDS: -0.30 Total: 55.15 kcal Total: -95.20 -1.40 -96.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724992184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.226 kcal (2) G-P(sol) polarization free energy of solvation -95.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds