Wall clock time and date at job start Wed Apr 1 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81403 * 109.46956 * 2 1 4 4 O 1.42099 * 110.54640 * 68.37675 * 3 2 1 5 5 O 1.42101 * 110.54156 * 291.62114 * 3 2 1 6 6 N 1.65606 * 104.44788 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99938 * 65.00144 * 6 3 2 8 8 C 1.50697 * 109.47371 * 164.99647 * 7 6 3 9 9 O 1.21289 * 119.99647 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00506 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00353 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.46714 * 34.99995 * 11 10 8 13 13 C 1.52996 * 109.47552 * 275.00128 * 11 10 8 14 14 C 1.52993 * 109.47249 * 154.99632 * 11 10 8 15 15 C 1.53043 * 109.46189 * 300.03298 * 14 11 10 16 16 C 1.53193 * 109.31040 * 178.60015 * 15 14 11 17 17 N 1.46928 * 108.76897 * 54.65298 * 16 15 14 18 18 C 1.36940 * 120.62960 * 126.40304 * 17 16 15 19 19 H 1.07999 * 120.00088 * 332.60795 * 18 17 16 20 20 C 1.38808 * 119.99651 * 152.61192 * 18 17 16 21 21 N 1.31622 * 119.99979 * 159.34284 * 20 18 17 22 22 Si 1.86801 * 120.00262 * 339.34288 * 20 18 17 23 23 H 1.48495 * 109.47411 * 92.94328 * 22 20 18 24 24 H 1.48506 * 109.47139 * 212.94833 * 22 20 18 25 25 H 1.48503 * 109.46848 * 332.94377 * 22 20 18 26 26 C 1.46925 * 118.73843 * 306.38316 * 17 16 15 27 27 C 1.53044 * 109.46380 * 179.97438 * 14 11 10 28 28 H 1.09000 * 109.46890 * 299.99947 * 1 2 3 29 29 H 1.08993 * 109.47075 * 60.00069 * 1 2 3 30 30 H 1.09006 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47247 * 239.99880 * 2 1 3 32 32 H 1.09001 * 109.47160 * 119.99606 * 2 1 3 33 33 H 0.96995 * 119.99854 * 244.98958 * 6 3 2 34 34 H 1.09006 * 109.47084 * 44.99880 * 7 6 3 35 35 H 1.09000 * 109.47213 * 284.99610 * 7 6 3 36 36 H 0.97005 * 119.99363 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.47082 * 59.99531 * 13 11 10 38 38 H 1.09007 * 109.46730 * 300.00414 * 13 11 10 39 39 H 1.08993 * 109.47682 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.45915 * 60.00489 * 14 11 10 41 41 H 1.09004 * 109.49724 * 298.55945 * 15 14 11 42 42 H 1.08992 * 109.50312 * 58.66071 * 15 14 11 43 43 H 1.08994 * 109.59963 * 294.86080 * 16 15 14 44 44 H 1.09008 * 109.70194 * 174.50538 * 16 15 14 45 45 H 0.96996 * 120.00127 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.58565 * 293.82037 * 26 17 16 47 47 H 1.08997 * 109.69997 * 173.46080 * 26 17 16 48 48 H 1.09009 * 109.49209 * 301.33812 * 27 14 11 49 49 H 1.08998 * 109.49824 * 61.39985 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9401 1.2787 -1.0761 9 8 6.3759 1.9365 -0.1549 10 7 6.7728 0.8267 -2.0345 11 6 8.2043 1.1303 -1.9641 12 1 8.5229 1.1391 -0.9217 13 6 8.4662 2.5020 -2.5891 14 6 8.9901 0.0631 -2.7286 15 6 8.7275 -1.3090 -2.1036 16 6 9.4881 -2.3792 -2.8929 17 7 10.9076 -2.0044 -2.9507 18 6 11.8780 -2.8820 -2.5464 19 1 11.6516 -3.6329 -1.8039 20 6 13.1525 -2.8065 -3.0910 21 7 14.1734 -3.3386 -2.4529 22 14 13.4190 -1.9497 -4.7294 23 1 13.7734 -0.5273 -4.4924 24 1 14.5224 -2.6190 -5.4643 25 1 12.1730 -2.0219 -5.5341 26 6 11.2662 -0.6702 -3.4508 27 6 10.4855 0.3808 -2.6554 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2982 1.8768 0.7621 34 1 4.0545 1.3767 -2.0706 35 1 4.3238 -0.1134 -1.1349 36 1 6.4242 0.3003 -2.7710 37 1 7.9062 3.2623 -2.0444 38 1 8.1474 2.4931 -3.6315 39 1 9.5311 2.7280 -2.5363 40 1 8.6714 0.0544 -3.7709 41 1 9.0691 -1.3087 -1.0685 42 1 7.6596 -1.5246 -2.1348 43 1 9.0857 -2.4430 -3.9038 44 1 9.3849 -3.3444 -2.3970 45 1 15.0640 -3.2861 -2.8336 46 1 11.0088 -0.5946 -4.5072 47 1 12.3360 -0.5050 -3.3226 48 1 10.6687 1.3681 -3.0795 49 1 10.8101 0.3657 -1.6150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725763150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:02 Heat of formation + Delta-G solvation = -93.482462 kcal Electronic energy + Delta-G solvation = -29138.120300 eV Core-core repulsion = 25034.830673 eV Total energy + Delta-G solvation = -4103.289627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.28229 -38.38490 -37.53472 -36.39443 -35.83933 -34.97780 -33.70598 -33.02801 -31.61689 -30.45634 -29.55908 -27.37164 -25.49008 -24.61360 -22.99876 -22.74845 -21.04753 -20.67908 -19.85673 -19.50080 -18.50895 -17.52131 -16.97282 -16.79423 -16.41090 -16.22633 -15.79938 -15.50329 -15.09242 -14.64098 -14.22498 -14.08111 -14.00021 -13.78160 -13.72014 -13.60179 -13.15949 -13.04483 -13.02834 -12.72539 -12.55704 -12.52150 -12.43054 -12.33743 -12.12864 -12.05114 -11.91225 -11.43389 -11.29523 -11.15291 -10.86350 -10.56056 -10.53240 -10.27213 -10.16618 -10.01642 -9.90317 -9.72504 -9.44974 -9.20073 -8.64783 -7.00783 -5.97618 -3.33445 -0.24626 2.16534 2.32124 2.92754 3.28847 3.32090 3.45323 3.47709 3.68886 4.01874 4.22137 4.26572 4.49903 4.60037 4.64770 4.73051 4.75721 4.91053 4.98113 5.02194 5.11100 5.13425 5.14453 5.36270 5.37380 5.40699 5.50169 5.65937 5.74516 5.79872 5.95615 6.01892 6.08821 6.14297 6.20491 6.33220 6.42135 6.46631 6.53785 6.58960 6.62018 6.66499 6.92373 7.26352 7.93364 7.93678 8.30147 8.91521 9.69428 10.07094 11.18411 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.002030 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.278113 B =13789.676208 C =14295.375418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.615 3.385 4 O -0.952 6.952 5 O -0.955 6.955 6 N -1.109 6.109 7 C 0.093 3.907 8 C 0.512 3.488 9 O -0.532 6.532 10 N -0.716 5.716 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.164 4.164 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.149 3.851 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.084 0.916 20 C 0.022 3.978 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.126 3.874 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.428 0.572 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.402 0.598 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.262 0.738 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.896 7.533 1.016 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.706 3.294 4 O -0.942 6.942 5 O -0.944 6.944 6 N -0.871 5.871 7 C -0.037 4.037 8 C 0.296 3.704 9 O -0.408 6.408 10 N -0.368 5.368 11 C 0.041 3.959 12 H 0.108 0.892 13 C -0.222 4.222 14 C -0.105 4.105 15 C -0.167 4.167 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.388 4.388 19 H 0.102 0.898 20 C -0.177 4.177 21 N -0.551 5.551 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.001 3.999 27 C -0.167 4.167 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.958 8.682 1.539 27.414 hybrid contribution 0.589 -0.500 -1.032 1.289 sum -25.369 8.182 0.507 26.661 Atomic orbital electron populations 1.21513 0.90284 1.05271 1.03593 1.30517 1.07503 1.26286 1.11928 1.04959 0.72700 0.77277 0.74430 1.93628 1.82747 1.72879 1.44994 1.93611 1.83201 1.72002 1.45624 1.55392 1.25903 1.77985 1.27845 1.21123 0.92217 0.99543 0.90848 1.20296 0.87950 0.79739 0.82422 1.90719 1.77270 1.38853 1.33947 1.46051 1.08747 1.55183 1.26785 1.21178 0.78518 0.94600 1.01628 0.89231 1.22220 1.02661 0.96651 1.00710 1.21341 0.95956 0.94164 0.99015 1.22049 0.98791 0.95073 1.00762 1.20909 0.84538 0.95828 0.96454 1.44352 1.01698 1.10925 1.76001 1.18912 0.89668 1.12469 1.17764 0.89794 1.25292 0.95739 0.98389 0.98265 1.69840 0.98987 1.48345 1.37944 0.86934 0.77084 0.78079 0.86448 1.21633 1.23203 1.19649 1.21322 0.98711 0.85005 0.94886 1.22096 0.93557 0.98862 1.02202 0.90857 0.90831 0.89828 0.84926 0.84634 0.73318 0.87157 0.88606 0.76396 0.92498 0.92533 0.90919 0.91224 0.91837 0.92948 0.96182 0.91989 0.92766 0.95834 0.90917 0.92276 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.92 37.16 0.37 -0.20 16 2 C -0.63 -2.33 6.79 37.16 0.25 -2.07 16 3 S 2.61 19.31 5.46 -107.50 -0.59 18.72 16 4 O -0.95 -10.51 18.08 -57.54 -1.04 -11.55 16 5 O -0.95 -9.92 17.50 -57.54 -1.01 -10.92 16 6 N -1.11 -8.27 5.82 -11.66 -0.07 -8.34 16 7 C 0.09 0.58 6.61 -5.20 -0.03 0.54 16 8 C 0.51 5.08 7.86 -10.99 -0.09 4.99 16 9 O -0.53 -7.42 15.39 5.55 0.09 -7.33 16 10 N -0.72 -6.40 4.36 -53.81 -0.23 -6.63 16 11 C 0.14 1.67 2.16 -67.94 -0.15 1.52 16 12 H 0.09 1.24 7.58 -51.92 -0.39 0.84 16 13 C -0.16 -1.80 9.13 37.16 0.34 -1.46 16 14 C -0.09 -1.12 1.79 -90.58 -0.16 -1.28 16 15 C -0.13 -1.80 5.22 -26.61 -0.14 -1.94 16 16 C 0.15 2.68 6.52 -3.71 -0.02 2.65 16 17 N -0.61 -13.72 2.77 -172.32 -0.48 -14.20 16 18 C -0.26 -7.09 10.04 -15.06 -0.15 -7.24 16 19 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 20 C 0.02 0.63 5.23 -17.43 -0.09 0.53 16 21 N -0.91 -27.53 13.97 55.49 0.78 -26.76 16 22 Si 0.88 21.94 24.35 -169.99 -4.14 17.81 16 23 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 25 H -0.27 -6.57 6.63 56.52 0.38 -6.20 16 26 C 0.13 2.60 4.20 -3.71 -0.02 2.59 16 27 C -0.13 -2.05 5.04 -26.61 -0.13 -2.18 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.43 3.69 7.66 -34.47 -0.26 3.43 16 34 H 0.11 0.53 7.70 -51.93 -0.40 0.13 16 35 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.40 2.46 8.39 -40.82 -0.34 2.11 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 39 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.58 7.41 -51.93 -0.38 0.19 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 1.13 7.93 -51.92 -0.41 0.72 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 47 H 0.07 1.68 4.50 -51.93 -0.23 1.44 16 48 H 0.06 0.82 6.36 -51.92 -0.33 0.49 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -37.66 393.63 -8.93 -46.59 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.14 Total: 0.24 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.02 Total: -3.55 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.00 Total: -55.93 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.96 Total: -29.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.81 kcal Atomic # 16 Polarization: 19.31 SS G_CDS: -0.59 Total: 18.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.66 -8.93 -46.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725763150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.896 kcal (2) G-P(sol) polarization free energy of solvation -37.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds