Wall clock time and date at job start Wed Apr 1 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81403 * 109.46956 * 2 1 4 4 O 1.42099 * 110.54640 * 68.37675 * 3 2 1 5 5 O 1.42101 * 110.54156 * 291.62114 * 3 2 1 6 6 N 1.65606 * 104.44788 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99938 * 65.00144 * 6 3 2 8 8 C 1.50697 * 109.47371 * 164.99647 * 7 6 3 9 9 O 1.21289 * 119.99647 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00506 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00353 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.46714 * 34.99995 * 11 10 8 13 13 C 1.52996 * 109.47552 * 275.00128 * 11 10 8 14 14 C 1.52993 * 109.47249 * 154.99632 * 11 10 8 15 15 C 1.53043 * 109.46189 * 300.03298 * 14 11 10 16 16 C 1.53193 * 109.31040 * 178.60015 * 15 14 11 17 17 N 1.46928 * 108.76897 * 54.65298 * 16 15 14 18 18 C 1.36940 * 120.62960 * 126.40304 * 17 16 15 19 19 H 1.07999 * 120.00088 * 332.60795 * 18 17 16 20 20 C 1.38808 * 119.99651 * 152.61192 * 18 17 16 21 21 N 1.31622 * 119.99979 * 159.34284 * 20 18 17 22 22 Si 1.86801 * 120.00262 * 339.34288 * 20 18 17 23 23 H 1.48495 * 109.47411 * 92.94328 * 22 20 18 24 24 H 1.48506 * 109.47139 * 212.94833 * 22 20 18 25 25 H 1.48503 * 109.46848 * 332.94377 * 22 20 18 26 26 C 1.46925 * 118.73843 * 306.38316 * 17 16 15 27 27 C 1.53044 * 109.46380 * 179.97438 * 14 11 10 28 28 H 1.09000 * 109.46890 * 299.99947 * 1 2 3 29 29 H 1.08993 * 109.47075 * 60.00069 * 1 2 3 30 30 H 1.09006 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47247 * 239.99880 * 2 1 3 32 32 H 1.09001 * 109.47160 * 119.99606 * 2 1 3 33 33 H 0.96995 * 119.99854 * 244.98958 * 6 3 2 34 34 H 1.09006 * 109.47084 * 44.99880 * 7 6 3 35 35 H 1.09000 * 109.47213 * 284.99610 * 7 6 3 36 36 H 0.97005 * 119.99363 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.47082 * 59.99531 * 13 11 10 38 38 H 1.09007 * 109.46730 * 300.00414 * 13 11 10 39 39 H 1.08993 * 109.47682 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.45915 * 60.00489 * 14 11 10 41 41 H 1.09004 * 109.49724 * 298.55945 * 15 14 11 42 42 H 1.08992 * 109.50312 * 58.66071 * 15 14 11 43 43 H 1.08994 * 109.59963 * 294.86080 * 16 15 14 44 44 H 1.09008 * 109.70194 * 174.50538 * 16 15 14 45 45 H 0.96996 * 120.00127 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.58565 * 293.82037 * 26 17 16 47 47 H 1.08997 * 109.69997 * 173.46080 * 26 17 16 48 48 H 1.09009 * 109.49209 * 301.33812 * 27 14 11 49 49 H 1.08998 * 109.49824 * 61.39985 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9401 1.2787 -1.0761 9 8 6.3759 1.9365 -0.1549 10 7 6.7728 0.8267 -2.0345 11 6 8.2043 1.1303 -1.9641 12 1 8.5229 1.1391 -0.9217 13 6 8.4662 2.5020 -2.5891 14 6 8.9901 0.0631 -2.7286 15 6 8.7275 -1.3090 -2.1036 16 6 9.4881 -2.3792 -2.8929 17 7 10.9076 -2.0044 -2.9507 18 6 11.8780 -2.8820 -2.5464 19 1 11.6516 -3.6329 -1.8039 20 6 13.1525 -2.8065 -3.0910 21 7 14.1734 -3.3386 -2.4529 22 14 13.4190 -1.9497 -4.7294 23 1 13.7734 -0.5273 -4.4924 24 1 14.5224 -2.6190 -5.4643 25 1 12.1730 -2.0219 -5.5341 26 6 11.2662 -0.6702 -3.4508 27 6 10.4855 0.3808 -2.6554 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2982 1.8768 0.7621 34 1 4.0545 1.3767 -2.0706 35 1 4.3238 -0.1134 -1.1349 36 1 6.4242 0.3003 -2.7710 37 1 7.9062 3.2623 -2.0444 38 1 8.1474 2.4931 -3.6315 39 1 9.5311 2.7280 -2.5363 40 1 8.6714 0.0544 -3.7709 41 1 9.0691 -1.3087 -1.0685 42 1 7.6596 -1.5246 -2.1348 43 1 9.0857 -2.4430 -3.9038 44 1 9.3849 -3.3444 -2.3970 45 1 15.0640 -3.2861 -2.8336 46 1 11.0088 -0.5946 -4.5072 47 1 12.3360 -0.5050 -3.3226 48 1 10.6687 1.3681 -3.0795 49 1 10.8101 0.3657 -1.6150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725763150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:01 Heat of formation + Delta-G solvation = -125.250094 kcal Electronic energy + Delta-G solvation = -29139.497848 eV Core-core repulsion = 25034.830673 eV Total energy + Delta-G solvation = -4104.667175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.12564 -39.62250 -38.20630 -37.07759 -36.99655 -35.62789 -34.54479 -33.99360 -33.12097 -31.93530 -30.77983 -27.98723 -27.07649 -24.91949 -24.41238 -24.19230 -22.20941 -21.53911 -20.85368 -20.35134 -19.18877 -18.71730 -18.14477 -17.51490 -17.31693 -17.08285 -16.73235 -16.45689 -15.90596 -15.88331 -15.34723 -15.21256 -15.13072 -14.87574 -14.49090 -14.39167 -14.24997 -14.22579 -13.93678 -13.71616 -13.55758 -13.38766 -13.33152 -13.23034 -13.12398 -13.08644 -12.71035 -12.57130 -12.41180 -12.35935 -12.17333 -11.99134 -11.62395 -11.58488 -11.49089 -11.30288 -11.15198 -10.97148 -10.64203 -10.49475 -10.04135 -8.88977 -8.14975 -5.45811 -0.75583 1.31641 1.42399 1.51888 1.60532 1.64039 2.22811 2.43529 2.83636 3.07946 3.23449 3.40397 3.57720 3.71304 3.76966 3.92491 3.95922 3.99467 4.28416 4.34825 4.39160 4.41672 4.44444 4.49036 4.54142 4.60879 4.62147 4.73953 4.76635 4.84948 4.89671 4.90185 5.02455 5.04095 5.12551 5.14671 5.16094 5.24410 5.31843 5.39456 5.50593 5.66147 5.89514 5.92065 6.14516 6.59385 6.95970 7.26064 7.66747 8.06155 9.05166 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.002030 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.278113 B =13789.676208 C =14295.375418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.605 4.605 3 S 2.616 3.384 4 O -1.000 7.000 5 O -0.992 6.992 6 N -1.116 6.116 7 C 0.089 3.911 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.705 5.705 11 C 0.155 3.845 12 H 0.062 0.938 13 C -0.160 4.160 14 C -0.075 4.075 15 C -0.116 4.116 16 C 0.142 3.858 17 N -0.623 5.623 18 C -0.246 4.246 19 H 0.047 0.953 20 C -0.042 4.042 21 N -0.961 5.961 22 Si 0.951 3.049 23 H -0.276 1.276 24 H -0.315 1.315 25 H -0.255 1.255 26 C 0.120 3.880 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.422 0.578 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.420 0.580 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.260 0.740 46 H 0.039 0.961 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.895 7.539 -1.290 29.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.739 4.739 3 S 2.713 3.287 4 O -0.990 6.990 5 O -0.982 6.982 6 N -0.877 5.877 7 C -0.040 4.040 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.358 5.358 11 C 0.050 3.950 12 H 0.080 0.920 13 C -0.218 4.218 14 C -0.094 4.094 15 C -0.155 4.155 16 C 0.017 3.983 17 N -0.348 5.348 18 C -0.376 4.376 19 H 0.065 0.935 20 C -0.236 4.236 21 N -0.608 5.608 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.244 1.244 25 H -0.179 1.179 26 C -0.005 4.005 27 C -0.161 4.161 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.258 0.742 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.258 0.742 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -29.014 8.739 -0.814 30.312 hybrid contribution 1.431 -0.592 -0.232 1.566 sum -27.583 8.147 -1.046 28.780 Atomic orbital electron populations 1.21707 0.90340 1.06534 1.03643 1.30296 1.07261 1.21638 1.14661 1.04749 0.72359 0.78944 0.72694 1.93561 1.83375 1.75470 1.46640 1.93555 1.83629 1.74463 1.46546 1.55329 1.25774 1.78586 1.28008 1.21449 0.89075 1.02413 0.91041 1.20965 0.89483 0.78682 0.81519 1.90711 1.78359 1.40954 1.35860 1.45868 1.07472 1.55164 1.27261 1.20823 0.79940 0.94462 0.99796 0.92019 1.22175 1.02395 0.95704 1.01548 1.21231 0.93942 0.93693 1.00518 1.21927 1.00566 0.94480 0.98546 1.21147 0.82323 0.96678 0.98131 1.44521 1.02765 1.11258 1.76218 1.18860 0.90794 1.11860 1.16077 0.93501 1.25973 0.95569 1.00414 1.01674 1.69988 0.99421 1.51624 1.39720 0.85839 0.77030 0.77407 0.81703 1.20278 1.24397 1.17897 1.21395 0.97797 0.85058 0.96253 1.21990 0.95221 0.98695 1.00225 0.91328 0.90660 0.87790 0.81577 0.82628 0.74151 0.85383 0.83847 0.74195 0.93690 0.90603 0.91186 0.88682 0.94376 0.88699 0.93855 0.93248 0.93113 0.94283 0.93911 0.89657 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 9.92 71.98 0.71 -0.06 16 2 C -0.60 -2.09 6.79 71.98 0.49 -1.60 16 3 S 2.62 35.04 5.46 -56.49 -0.31 34.73 16 4 O -1.00 -22.35 18.08 -127.65 -2.31 -24.66 16 5 O -0.99 -19.52 17.50 -127.65 -2.23 -21.75 16 6 N -1.12 -14.67 5.82 -190.79 -1.11 -15.78 16 7 C 0.09 0.78 6.61 85.63 0.57 1.34 16 8 C 0.51 8.75 7.86 87.66 0.69 9.44 16 9 O -0.58 -15.77 15.39 -3.06 -0.05 -15.81 16 10 N -0.70 -9.94 4.36 -442.54 -1.93 -11.87 16 11 C 0.15 3.15 2.16 44.99 0.10 3.25 16 12 H 0.06 1.65 7.58 -2.38 -0.02 1.63 16 13 C -0.16 -3.07 9.13 71.98 0.66 -2.41 16 14 C -0.07 -1.69 1.79 -10.77 -0.02 -1.71 16 15 C -0.12 -2.94 5.22 30.67 0.16 -2.78 16 16 C 0.14 4.78 6.52 86.36 0.56 5.34 16 17 N -0.62 -27.70 2.77 -699.10 -1.94 -29.63 16 18 C -0.25 -13.76 10.04 84.03 0.84 -12.91 16 19 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 20 C -0.04 -2.45 5.23 84.86 0.44 -2.00 16 21 N -0.96 -60.60 13.97 21.65 0.30 -60.30 16 22 Si 0.95 45.76 24.35 68.60 1.67 47.43 16 23 H -0.28 -12.56 6.62 99.48 0.66 -11.90 16 24 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 25 H -0.25 -11.41 6.63 99.48 0.66 -10.75 16 26 C 0.12 4.70 4.20 86.36 0.36 5.06 16 27 C -0.12 -3.66 5.04 30.67 0.15 -3.50 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.42 7.10 7.66 -96.75 -0.74 6.36 16 34 H 0.13 0.70 7.70 -2.38 -0.02 0.68 16 35 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.42 2.83 8.39 -92.70 -0.78 2.05 16 37 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.37 6.40 -2.39 -0.02 1.35 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.09 1.62 7.41 -2.39 -0.02 1.60 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.76 7.93 -2.38 -0.02 1.74 16 45 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.04 1.43 7.07 -2.39 -0.02 1.42 16 47 H 0.04 1.93 4.50 -2.39 -0.01 1.92 16 48 H 0.09 2.12 6.36 -2.38 -0.02 2.11 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -88.19 393.63 -2.83 -91.02 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -0.65 Total: 9.15 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.72 Total: -2.54 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -4.67 Total: -117.58 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -4.59 Total: -62.22 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Atomic # 16 Polarization: 35.04 SS G_CDS: -0.31 Total: 34.73 kcal Total: -88.19 -2.83 -91.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725763150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.230 kcal (2) G-P(sol) polarization free energy of solvation -88.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds