Wall clock time and date at job start Wed Apr 1 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81398 * 109.46799 * 2 1 4 4 O 1.42100 * 110.54247 * 68.38176 * 3 2 1 5 5 O 1.42099 * 110.54563 * 291.62435 * 3 2 1 6 6 N 1.65604 * 104.44904 * 179.97438 * 3 2 1 7 7 C 1.46506 * 119.99448 * 65.00391 * 6 3 2 8 8 H 1.08997 * 109.47081 * 334.99725 * 7 6 3 9 9 C 1.52995 * 109.47204 * 95.00269 * 7 6 3 10 10 C 1.50698 * 109.46748 * 214.99877 * 7 6 3 11 11 O 1.21282 * 120.00223 * 353.33849 * 10 7 6 12 12 N 1.34782 * 119.99805 * 173.33521 * 10 7 6 13 13 C 1.46505 * 120.00015 * 176.69595 * 12 10 7 14 14 C 1.46499 * 120.00207 * 356.69435 * 12 10 7 15 15 C 1.53347 * 109.41735 * 247.09649 * 14 12 10 16 16 C 1.53196 * 109.14706 * 178.67420 * 15 14 12 17 17 N 1.46925 * 108.89396 * 54.57511 * 16 15 14 18 18 C 1.36939 * 120.62781 * 126.29948 * 17 16 15 19 19 H 1.08001 * 120.00116 * 329.67975 * 18 17 16 20 20 C 1.38809 * 119.99910 * 149.68544 * 18 17 16 21 21 N 1.31623 * 119.99915 * 346.07031 * 20 18 17 22 22 Si 1.86806 * 120.00058 * 166.06907 * 20 18 17 23 23 H 1.48496 * 109.46858 * 90.00080 * 22 20 18 24 24 H 1.48500 * 109.47177 * 210.00089 * 22 20 18 25 25 H 1.48497 * 109.47153 * 330.00041 * 22 20 18 26 26 C 1.46919 * 118.74034 * 306.32252 * 17 16 15 27 27 C 1.53038 * 109.46235 * 126.96528 * 14 12 10 28 28 H 1.08998 * 109.47242 * 59.99998 * 1 2 3 29 29 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47376 * 299.99242 * 1 2 3 31 31 H 1.09001 * 109.46682 * 240.00546 * 2 1 3 32 32 H 1.08999 * 109.47135 * 120.00545 * 2 1 3 33 33 H 0.96991 * 120.00391 * 245.00054 * 6 3 2 34 34 H 1.09000 * 109.47745 * 65.90086 * 9 7 6 35 35 H 1.08995 * 109.47403 * 185.90281 * 9 7 6 36 36 H 1.09005 * 109.47036 * 305.89551 * 9 7 6 37 37 H 1.08998 * 109.46774 * 275.13949 * 13 12 10 38 38 H 1.09005 * 109.46796 * 35.13258 * 13 12 10 39 39 H 1.08999 * 109.47191 * 155.13539 * 13 12 10 40 40 H 1.09000 * 109.45819 * 6.99380 * 14 12 10 41 41 H 1.08999 * 109.68957 * 58.71124 * 15 14 12 42 42 H 1.08998 * 109.47603 * 298.50669 * 15 14 12 43 43 H 1.08999 * 109.58684 * 294.71615 * 16 15 14 44 44 H 1.08999 * 109.58665 * 174.43704 * 16 15 14 45 45 H 0.97005 * 119.99548 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58682 * 173.39502 * 26 17 16 47 47 H 1.09006 * 109.58591 * 293.67974 * 26 17 16 48 48 H 1.09008 * 109.49356 * 61.43146 * 27 14 12 49 49 H 1.08996 * 109.49683 * 301.34382 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.4674 0.9670 -1.1489 8 1 3.7818 0.3011 -1.6727 9 6 4.9303 2.0730 -2.0994 10 6 5.6623 0.1830 -0.6708 11 8 5.9891 0.2271 0.4963 12 7 6.3678 -0.5672 -1.5403 13 6 7.5714 -1.2717 -1.0914 14 6 5.9311 -0.6784 -2.9343 15 6 5.4767 -2.1162 -3.2131 16 6 4.9905 -2.2174 -4.6623 17 7 6.0526 -1.7346 -5.5553 18 6 6.5027 -2.5125 -6.5884 19 1 6.4846 -3.5889 -6.5016 20 6 6.9823 -1.9177 -7.7473 21 7 6.7578 -0.6405 -7.9729 22 14 7.9465 -2.9297 -8.9866 23 1 7.0111 -3.5239 -9.9751 24 1 8.9198 -2.0557 -9.6893 25 1 8.6748 -4.0142 -8.2804 26 6 6.6229 -0.4015 -5.3184 27 6 7.0929 -0.3177 -3.8629 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.2981 1.8767 0.7621 34 1 5.6944 2.6767 -1.6098 35 1 5.3444 1.6257 -3.0030 36 1 4.0817 2.7044 -2.3627 37 1 8.4260 -0.5968 -1.1382 38 1 7.4322 -1.6109 -0.0649 39 1 7.7513 -2.1313 -1.7370 40 1 5.1002 0.0048 -3.1100 41 1 4.6639 -2.3820 -2.5373 42 1 6.3139 -2.7977 -3.0618 43 1 4.0979 -1.6054 -4.7918 44 1 4.7588 -3.2560 -4.8982 45 1 7.0934 -0.2248 -8.7826 46 1 7.4701 -0.2426 -5.9857 47 1 5.8641 0.3588 -5.5039 48 1 7.9149 -1.0160 -3.7051 49 1 7.4298 0.6962 -3.6470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731347561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:39 Heat of formation + Delta-G solvation = -81.159803 kcal Electronic energy + Delta-G solvation = -30707.764420 eV Core-core repulsion = 26605.009143 eV Total energy + Delta-G solvation = -4102.755276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46253 -37.84683 -37.33498 -36.19793 -35.70352 -35.15920 -33.49012 -32.38280 -30.52373 -30.24222 -29.64780 -27.16503 -25.28234 -24.40750 -23.82158 -22.34333 -22.19634 -19.76820 -19.56842 -19.21150 -18.28976 -17.23580 -16.85976 -16.51477 -16.36384 -15.86535 -15.47764 -15.03252 -14.91005 -14.42994 -14.18930 -13.89438 -13.77782 -13.64046 -13.52575 -13.17515 -12.88508 -12.84530 -12.72778 -12.59128 -12.43578 -12.32214 -12.20541 -12.05967 -11.96542 -11.87242 -11.76341 -11.59508 -11.16095 -10.98371 -10.86712 -10.80874 -10.51200 -10.41615 -10.24453 -10.07906 -9.89604 -9.77625 -9.51559 -8.65589 -8.47363 -6.77252 -5.89464 -3.35532 -0.01080 2.34595 2.48242 3.01628 3.30969 3.38681 3.39767 3.51673 3.90697 4.19264 4.28932 4.40280 4.43977 4.56452 4.83328 4.87714 4.94537 5.04381 5.23142 5.25201 5.30651 5.34871 5.35819 5.40693 5.48607 5.56852 5.59996 5.69501 5.77285 5.82389 5.86837 6.05490 6.10972 6.20390 6.26224 6.38102 6.45591 6.58177 6.61199 6.74596 6.78969 7.20236 7.37335 7.53213 7.70117 8.05311 8.35637 9.10696 9.72384 10.28924 11.19208 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002932 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.000286 B = 9549.010380 C =10155.223584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.611 3.389 4 O -0.956 6.956 5 O -0.947 6.947 6 N -1.101 6.101 7 C 0.135 3.865 8 H 0.105 0.895 9 C -0.177 4.177 10 C 0.509 3.491 11 O -0.543 6.543 12 N -0.601 5.601 13 C 0.087 3.913 14 C 0.127 3.873 15 C -0.144 4.144 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.173 3.827 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.425 0.575 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.255 0.745 46 H 0.091 0.909 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 1.237 14.999 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.703 3.297 4 O -0.947 6.947 5 O -0.937 6.937 6 N -0.861 5.861 7 C 0.024 3.976 8 H 0.123 0.877 9 C -0.236 4.236 10 C 0.295 3.705 11 O -0.421 6.421 12 N -0.333 5.333 13 C -0.055 4.055 14 C 0.025 3.975 15 C -0.184 4.184 16 C 0.019 3.981 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.046 3.954 27 C -0.188 4.188 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.056 2.084 15.299 16.976 hybrid contribution 1.007 -1.236 -0.435 1.652 sum -6.049 0.848 14.865 16.071 Atomic orbital electron populations 1.21499 0.90235 1.05239 1.03500 1.30538 1.07519 1.26542 1.11925 1.05077 0.72788 0.77334 0.74505 1.93608 1.82902 1.73056 1.45101 1.93632 1.83113 1.71775 1.45213 1.55489 1.25744 1.77117 1.27775 1.20632 0.94412 0.95581 0.87007 0.87743 1.22477 1.03668 0.98378 0.99033 1.20580 0.84490 0.79633 0.85820 1.90659 1.69807 1.64398 1.17200 1.48154 1.26800 1.47467 1.10841 1.21583 0.86353 0.96961 1.00646 1.21717 0.98690 0.98423 0.78685 1.22520 1.00716 0.95480 0.99678 1.20886 0.91031 0.98456 0.87749 1.44030 1.38921 1.16481 1.31914 1.19132 1.37293 0.89759 0.92494 0.91769 1.25115 1.01118 0.96296 0.96721 1.69984 1.47254 1.10779 1.26523 0.86300 0.79767 0.79390 0.81292 1.21310 1.21527 1.20472 1.20782 0.98585 0.86321 0.89687 1.22604 0.97061 1.00255 0.98891 0.90720 0.89870 0.91004 0.84958 0.84760 0.73778 0.91383 0.89450 0.89406 0.92729 0.91239 0.90524 0.88827 0.92879 0.91613 0.96165 0.92316 0.93476 0.89064 0.95921 0.91889 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.92 37.16 0.37 -0.62 16 2 C -0.64 -4.70 6.68 37.16 0.25 -4.45 16 3 S 2.61 26.99 5.38 -107.50 -0.58 26.41 16 4 O -0.96 -12.56 18.08 -57.54 -1.04 -13.60 16 5 O -0.95 -12.36 17.05 -57.54 -0.98 -13.34 16 6 N -1.10 -11.62 5.20 -5.88 -0.03 -11.65 16 7 C 0.13 1.52 2.23 -69.08 -0.15 1.37 16 8 H 0.10 0.97 6.43 -51.93 -0.33 0.64 16 9 C -0.18 -2.02 9.11 37.15 0.34 -1.69 16 10 C 0.51 6.72 7.05 -10.98 -0.08 6.64 16 11 O -0.54 -8.40 15.60 5.56 0.09 -8.31 16 12 N -0.60 -7.77 2.76 -173.70 -0.48 -8.25 16 13 C 0.09 1.05 9.32 59.85 0.56 1.61 16 14 C 0.13 1.76 1.60 -67.73 -0.11 1.66 16 15 C -0.14 -2.08 5.46 -26.45 -0.14 -2.23 16 16 C 0.15 2.65 6.50 -3.71 -0.02 2.62 16 17 N -0.59 -13.24 2.99 -172.32 -0.51 -13.76 16 18 C -0.26 -6.53 9.58 -15.06 -0.14 -6.67 16 19 H 0.06 1.61 7.87 -52.49 -0.41 1.20 16 20 C 0.01 0.17 4.98 -17.43 -0.09 0.08 16 21 N -0.90 -24.56 11.17 55.49 0.62 -23.94 16 22 Si 0.90 20.56 29.58 -169.99 -5.03 15.53 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.17 3.62 5.27 -3.72 -0.02 3.61 16 27 C -0.15 -2.39 5.00 -26.61 -0.13 -2.52 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.13 0.82 7.44 -51.92 -0.39 0.43 16 32 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.43 4.49 8.10 -34.47 -0.28 4.21 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.03 5.36 -51.93 -0.28 0.75 16 36 H 0.09 1.02 7.36 -51.93 -0.38 0.64 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.83 7.54 -51.93 -0.39 0.44 16 39 H 0.08 0.89 6.59 -51.93 -0.34 0.54 16 40 H 0.09 1.23 4.12 -51.93 -0.21 1.02 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.99 7.05 -51.93 -0.37 0.63 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.09 2.21 6.13 -51.93 -0.32 1.89 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.06 1.05 7.37 -51.92 -0.38 0.67 16 49 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -32.73 390.75 -9.29 -42.02 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.86 Total: 3.60 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.62 Total: -0.60 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.41 Total: -57.60 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.93 Total: -35.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 26.99 SS G_CDS: -0.58 Total: 26.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.73 -9.29 -42.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731347561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.137 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds