Wall clock time and date at job start Wed Apr 1 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81398 * 109.46799 * 2 1 4 4 O 1.42100 * 110.54247 * 68.38176 * 3 2 1 5 5 O 1.42099 * 110.54563 * 291.62435 * 3 2 1 6 6 N 1.65604 * 104.44904 * 179.97438 * 3 2 1 7 7 C 1.46506 * 119.99448 * 65.00391 * 6 3 2 8 8 H 1.08997 * 109.47081 * 334.99725 * 7 6 3 9 9 C 1.52995 * 109.47204 * 95.00269 * 7 6 3 10 10 C 1.50698 * 109.46748 * 214.99877 * 7 6 3 11 11 O 1.21282 * 120.00223 * 353.33849 * 10 7 6 12 12 N 1.34782 * 119.99805 * 173.33521 * 10 7 6 13 13 C 1.46505 * 120.00015 * 176.69595 * 12 10 7 14 14 C 1.46499 * 120.00207 * 356.69435 * 12 10 7 15 15 C 1.53347 * 109.41735 * 247.09649 * 14 12 10 16 16 C 1.53196 * 109.14706 * 178.67420 * 15 14 12 17 17 N 1.46925 * 108.89396 * 54.57511 * 16 15 14 18 18 C 1.36939 * 120.62781 * 126.29948 * 17 16 15 19 19 H 1.08001 * 120.00116 * 329.67975 * 18 17 16 20 20 C 1.38809 * 119.99910 * 149.68544 * 18 17 16 21 21 N 1.31623 * 119.99915 * 346.07031 * 20 18 17 22 22 Si 1.86806 * 120.00058 * 166.06907 * 20 18 17 23 23 H 1.48496 * 109.46858 * 90.00080 * 22 20 18 24 24 H 1.48500 * 109.47177 * 210.00089 * 22 20 18 25 25 H 1.48497 * 109.47153 * 330.00041 * 22 20 18 26 26 C 1.46919 * 118.74034 * 306.32252 * 17 16 15 27 27 C 1.53038 * 109.46235 * 126.96528 * 14 12 10 28 28 H 1.08998 * 109.47242 * 59.99998 * 1 2 3 29 29 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47376 * 299.99242 * 1 2 3 31 31 H 1.09001 * 109.46682 * 240.00546 * 2 1 3 32 32 H 1.08999 * 109.47135 * 120.00545 * 2 1 3 33 33 H 0.96991 * 120.00391 * 245.00054 * 6 3 2 34 34 H 1.09000 * 109.47745 * 65.90086 * 9 7 6 35 35 H 1.08995 * 109.47403 * 185.90281 * 9 7 6 36 36 H 1.09005 * 109.47036 * 305.89551 * 9 7 6 37 37 H 1.08998 * 109.46774 * 275.13949 * 13 12 10 38 38 H 1.09005 * 109.46796 * 35.13258 * 13 12 10 39 39 H 1.08999 * 109.47191 * 155.13539 * 13 12 10 40 40 H 1.09000 * 109.45819 * 6.99380 * 14 12 10 41 41 H 1.08999 * 109.68957 * 58.71124 * 15 14 12 42 42 H 1.08998 * 109.47603 * 298.50669 * 15 14 12 43 43 H 1.08999 * 109.58684 * 294.71615 * 16 15 14 44 44 H 1.08999 * 109.58665 * 174.43704 * 16 15 14 45 45 H 0.97005 * 119.99548 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58682 * 173.39502 * 26 17 16 47 47 H 1.09006 * 109.58591 * 293.67974 * 26 17 16 48 48 H 1.09008 * 109.49356 * 61.43146 * 27 14 12 49 49 H 1.08996 * 109.49683 * 301.34382 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.4674 0.9670 -1.1489 8 1 3.7818 0.3011 -1.6727 9 6 4.9303 2.0730 -2.0994 10 6 5.6623 0.1830 -0.6708 11 8 5.9891 0.2271 0.4963 12 7 6.3678 -0.5672 -1.5403 13 6 7.5714 -1.2717 -1.0914 14 6 5.9311 -0.6784 -2.9343 15 6 5.4767 -2.1162 -3.2131 16 6 4.9905 -2.2174 -4.6623 17 7 6.0526 -1.7346 -5.5553 18 6 6.5027 -2.5125 -6.5884 19 1 6.4846 -3.5889 -6.5016 20 6 6.9823 -1.9177 -7.7473 21 7 6.7578 -0.6405 -7.9729 22 14 7.9465 -2.9297 -8.9866 23 1 7.0111 -3.5239 -9.9751 24 1 8.9198 -2.0557 -9.6893 25 1 8.6748 -4.0142 -8.2804 26 6 6.6229 -0.4015 -5.3184 27 6 7.0929 -0.3177 -3.8629 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.2981 1.8767 0.7621 34 1 5.6944 2.6767 -1.6098 35 1 5.3444 1.6257 -3.0030 36 1 4.0817 2.7044 -2.3627 37 1 8.4260 -0.5968 -1.1382 38 1 7.4322 -1.6109 -0.0649 39 1 7.7513 -2.1313 -1.7370 40 1 5.1002 0.0048 -3.1100 41 1 4.6639 -2.3820 -2.5373 42 1 6.3139 -2.7977 -3.0618 43 1 4.0979 -1.6054 -4.7918 44 1 4.7588 -3.2560 -4.8982 45 1 7.0934 -0.2248 -8.7826 46 1 7.4701 -0.2426 -5.9857 47 1 5.8641 0.3588 -5.5039 48 1 7.9149 -1.0160 -3.7051 49 1 7.4298 0.6962 -3.6470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731347561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:37 Heat of formation + Delta-G solvation = -104.945632 kcal Electronic energy + Delta-G solvation = -30708.795851 eV Core-core repulsion = 26605.009143 eV Total energy + Delta-G solvation = -4103.786707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.53253 -39.18049 -38.24270 -37.10024 -36.66081 -36.50926 -34.04927 -34.04231 -31.80331 -31.32293 -31.19085 -28.16578 -26.94912 -24.98165 -24.88068 -23.76866 -23.62525 -20.97332 -20.44908 -20.37967 -19.18159 -18.76373 -17.93226 -17.44171 -17.34721 -16.88498 -16.64883 -16.47282 -15.89169 -15.63502 -15.31220 -15.15200 -14.90021 -14.81949 -14.65072 -14.18126 -14.14017 -13.97481 -13.81042 -13.43998 -13.41152 -13.25558 -13.17834 -13.13175 -13.03553 -12.91659 -12.84120 -12.73269 -12.56162 -12.39035 -12.38817 -12.02364 -11.91572 -11.78039 -11.71258 -11.44099 -11.35584 -10.90600 -10.54042 -10.50317 -9.64774 -8.59868 -7.83553 -5.30401 -0.78854 1.44438 1.49126 1.52038 1.52402 1.59694 2.01212 2.54509 2.74751 3.16745 3.23595 3.34753 3.63414 3.70018 3.75478 3.81803 3.89592 3.97720 4.05152 4.17895 4.28480 4.38622 4.46512 4.52530 4.63640 4.71645 4.72857 4.74572 4.77394 4.83094 4.86243 4.96797 4.99131 5.03709 5.11925 5.12879 5.18728 5.28526 5.39554 5.44770 5.59711 5.70706 5.81808 5.90457 6.33090 6.45986 7.01865 7.21323 7.91944 8.42078 9.22490 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002932 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.000286 B = 9549.010380 C =10155.223584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.617 4.617 3 S 2.614 3.386 4 O -0.990 6.990 5 O -0.980 6.980 6 N -1.101 6.101 7 C 0.132 3.868 8 H 0.129 0.871 9 C -0.177 4.177 10 C 0.513 3.487 11 O -0.564 6.564 12 N -0.597 5.597 13 C 0.085 3.915 14 C 0.136 3.864 15 C -0.132 4.132 16 C 0.141 3.859 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.960 3.040 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.180 3.820 27 C -0.133 4.133 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.425 0.575 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.057 0.943 45 H 0.249 0.751 46 H 0.053 0.947 47 H 0.007 0.993 48 H 0.059 0.941 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 -0.356 16.346 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.750 4.750 3 S 2.710 3.290 4 O -0.981 6.981 5 O -0.970 6.970 6 N -0.860 5.860 7 C 0.021 3.979 8 H 0.147 0.853 9 C -0.235 4.235 10 C 0.299 3.701 11 O -0.443 6.443 12 N -0.328 5.328 13 C -0.057 4.057 14 C 0.034 3.966 15 C -0.171 4.171 16 C 0.015 3.985 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.578 5.578 22 Si 0.789 3.211 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.196 1.196 26 C 0.053 3.947 27 C -0.173 4.173 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.025 0.975 48 H 0.077 0.923 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.716 0.511 16.677 18.382 hybrid contribution 1.166 -0.788 -0.815 1.626 sum -6.550 -0.277 15.862 17.163 Atomic orbital electron populations 1.21687 0.89677 1.06605 1.03844 1.30379 1.07943 1.22744 1.13929 1.04847 0.72389 0.78641 0.73098 1.93561 1.83254 1.75048 1.46195 1.93589 1.83433 1.73889 1.46139 1.55390 1.25741 1.77314 1.27563 1.20727 0.94323 0.95638 0.87204 0.85315 1.22464 1.03578 0.98522 0.98970 1.20808 0.84648 0.79236 0.85381 1.90658 1.70466 1.65056 1.18154 1.48054 1.27068 1.47524 1.10156 1.21657 0.86040 0.97135 1.00885 1.21522 0.97895 0.98516 0.78715 1.22361 1.01662 0.95578 0.97544 1.21050 0.90171 0.98236 0.89011 1.44281 1.40442 1.16540 1.32049 1.19441 1.36280 0.90219 0.93064 0.91729 1.25755 1.02636 0.97179 0.98534 1.70128 1.48748 1.12106 1.26779 0.85398 0.78368 0.78099 0.79275 1.21406 1.22251 1.19624 1.20543 0.96661 0.85548 0.91912 1.22340 0.97758 1.01040 0.96165 0.90634 0.87881 0.90745 0.82925 0.82892 0.73881 0.91399 0.89759 0.89709 0.92545 0.91009 0.89972 0.87685 0.89566 0.91950 0.95630 0.92434 0.94205 0.92883 0.97506 0.92272 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.92 71.98 0.71 -0.99 16 2 C -0.62 -7.05 6.68 71.98 0.48 -6.56 16 3 S 2.61 50.36 5.38 -56.49 -0.30 50.06 16 4 O -0.99 -25.46 18.08 -127.65 -2.31 -27.77 16 5 O -0.98 -24.73 17.05 -127.65 -2.18 -26.90 16 6 N -1.10 -21.41 5.20 -172.52 -0.90 -22.31 16 7 C 0.13 2.66 2.23 44.24 0.10 2.76 16 8 H 0.13 1.93 6.43 -2.39 -0.02 1.91 16 9 C -0.18 -3.78 9.11 71.98 0.66 -3.12 16 10 C 0.51 12.17 7.05 87.66 0.62 12.79 16 11 O -0.56 -16.19 15.60 -3.04 -0.05 -16.24 16 12 N -0.60 -13.73 2.76 -821.84 -2.27 -16.00 16 13 C 0.09 1.83 9.32 127.77 1.19 3.02 16 14 C 0.14 3.42 1.60 45.12 0.07 3.49 16 15 C -0.13 -3.38 5.46 30.78 0.17 -3.21 16 16 C 0.14 4.84 6.50 86.36 0.56 5.40 16 17 N -0.61 -27.04 2.99 -699.11 -2.09 -29.13 16 18 C -0.26 -13.15 9.58 84.03 0.80 -12.35 16 19 H 0.07 3.20 7.87 -2.91 -0.02 3.18 16 20 C -0.05 -2.38 4.98 84.86 0.42 -1.96 16 21 N -0.93 -51.99 11.17 21.65 0.24 -51.74 16 22 Si 0.96 42.66 29.58 68.60 2.03 44.69 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.18 7.58 5.27 86.36 0.46 8.04 16 27 C -0.13 -4.13 5.00 30.67 0.15 -3.98 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.15 1.19 7.44 -2.39 -0.02 1.18 16 32 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 8.49 8.10 -96.75 -0.78 7.71 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.85 5.36 -2.39 -0.01 1.83 16 36 H 0.08 1.89 7.36 -2.38 -0.02 1.87 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.54 7.54 -2.38 -0.02 1.52 16 39 H 0.08 1.68 6.59 -2.39 -0.02 1.67 16 40 H 0.11 2.46 4.12 -2.39 -0.01 2.45 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.68 7.05 -2.39 -0.02 1.67 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.96 7.93 -2.39 -0.02 1.94 16 45 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 46 H 0.05 2.65 6.13 -2.39 -0.01 2.63 16 47 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 48 H 0.06 1.89 7.37 -2.38 -0.02 1.87 16 49 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 Total: -1.00 -71.13 390.75 -1.25 -72.38 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.17 Total: 19.64 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 6.39 Total: 3.33 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -5.01 Total: -119.18 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -4.53 Total: -70.91 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 50.36 SS G_CDS: -0.30 Total: 50.06 kcal Total: -71.13 -1.25 -72.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731347561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.570 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds