Wall clock time and date at job start Wed Apr 1 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00279 * 2 1 4 4 S 1.65601 * 119.99797 * 179.97438 * 2 1 3 5 5 O 1.42100 * 104.27822 * 333.92989 * 4 2 1 6 6 O 1.42103 * 104.27772 * 206.07654 * 4 2 1 7 7 C 1.81399 * 104.44938 * 90.00306 * 4 2 1 8 8 C 1.50699 * 109.47054 * 179.97438 * 7 4 2 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 4 11 11 C 1.46500 * 120.00169 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46886 * 34.99624 * 11 10 8 13 13 C 1.53002 * 109.47146 * 275.00181 * 11 10 8 14 14 C 1.52993 * 109.46910 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47574 * 59.99501 * 14 13 11 16 16 C 1.53002 * 109.47040 * 300.00128 * 15 14 13 17 17 C 1.52993 * 109.47042 * 59.99546 * 16 15 14 18 18 H 1.09006 * 109.47342 * 60.00411 * 17 16 15 19 19 C 1.53002 * 109.47042 * 179.97438 * 17 16 15 20 20 N 1.46507 * 109.46998 * 295.00385 * 19 17 16 21 21 C 1.36939 * 119.99796 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99629 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99786 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00122 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99761 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47331 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46947 * 119.99931 * 25 23 21 28 28 H 1.48495 * 109.47082 * 239.99875 * 25 23 21 29 29 H 1.08997 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47546 * 300.00610 * 1 2 3 31 31 H 1.09000 * 109.46902 * 60.00403 * 1 2 3 32 32 H 1.08998 * 109.47096 * 269.99857 * 3 2 1 33 33 H 1.09006 * 109.47110 * 29.99539 * 3 2 1 34 34 H 1.09001 * 109.47725 * 149.99380 * 3 2 1 35 35 H 1.09000 * 109.47070 * 299.99993 * 7 4 2 36 36 H 1.09001 * 109.46593 * 59.99990 * 7 4 2 37 37 H 0.96996 * 119.99844 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.46479 * 299.99839 * 13 11 10 39 39 H 1.08995 * 109.47133 * 59.99754 * 13 11 10 40 40 H 1.09000 * 109.47649 * 299.99515 * 14 13 11 41 41 H 1.08999 * 109.47101 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.47241 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.47138 * 59.99951 * 15 14 13 44 44 H 1.09006 * 109.46717 * 299.99574 * 16 15 14 45 45 H 1.08995 * 109.46764 * 179.97438 * 16 15 14 46 46 H 1.08995 * 109.46997 * 55.00158 * 19 17 16 47 47 H 1.08997 * 109.47452 * 175.00418 * 19 17 16 48 48 H 0.96999 * 119.99707 * 359.97438 * 20 19 17 49 49 H 0.97000 * 120.00179 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.3969 -2.3559 0.6063 6 8 3.5394 -1.1190 0.6058 7 6 2.5194 -1.8269 -1.7558 8 6 3.2705 -3.1268 -1.8871 9 8 3.6192 -3.7287 -0.8936 10 7 3.5556 -3.6199 -3.1086 11 6 4.2853 -4.8838 -3.2363 12 1 3.9923 -5.5556 -2.4295 13 6 5.7893 -4.6149 -3.1550 14 6 6.5513 -5.9347 -3.2890 15 6 6.2207 -6.5802 -4.6362 16 6 4.7167 -6.8491 -4.7175 17 6 3.9547 -5.5292 -4.5835 18 1 4.2476 -4.8569 -5.3900 19 6 2.4507 -5.7980 -4.6654 20 7 2.1171 -6.3046 -5.9990 21 6 0.8202 -6.6179 -6.3077 22 1 0.0434 -6.4911 -5.5682 23 6 0.5041 -7.0974 -7.5714 24 7 1.4506 -7.2504 -8.4730 25 14 -1.2651 -7.5240 -7.9927 26 1 -2.1312 -7.2627 -6.8152 27 1 -1.7172 -6.6887 -9.1343 28 1 -1.3532 -8.9591 -8.3639 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.3792 1.5833 -1.0276 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5139 35 1 1.5452 -1.9197 -2.2359 36 1 3.0867 -1.0297 -2.2361 37 1 3.2771 -3.1383 -3.9032 38 1 6.0824 -3.9430 -3.9618 39 1 6.0248 -4.1547 -2.1953 40 1 6.2584 -6.6070 -2.4825 41 1 7.6228 -5.7431 -3.2315 42 1 6.7640 -7.5203 -4.7318 43 1 6.5137 -5.9080 -5.4428 44 1 4.4237 -7.5213 -3.9109 45 1 4.4811 -7.3084 -5.6774 46 1 2.1726 -6.5384 -3.9154 47 1 1.9055 -4.8722 -4.4815 48 1 2.8148 -6.4181 -6.6632 49 1 1.2296 -7.5851 -9.3562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733082558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:50 Heat of formation + Delta-G solvation = -134.683506 kcal Electronic energy + Delta-G solvation = -29620.178112 eV Core-core repulsion = 25515.101874 eV Total energy + Delta-G solvation = -4105.076238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.44129 -39.55687 -38.34830 -37.28601 -36.87055 -36.44518 -35.43226 -33.71146 -32.11064 -31.24107 -29.80947 -28.93555 -26.94071 -25.58836 -24.75259 -23.69206 -22.04449 -21.78980 -20.95456 -19.96017 -19.32997 -18.98013 -18.18157 -17.77184 -17.51548 -16.92232 -16.75498 -16.47202 -15.82348 -15.59036 -15.41378 -15.37691 -15.24766 -15.08018 -14.83401 -14.64366 -14.21026 -13.93198 -13.83295 -13.65448 -13.60569 -13.35055 -13.27207 -13.20297 -12.97476 -12.78506 -12.68808 -12.56987 -12.54066 -12.24914 -12.18583 -12.08454 -11.94719 -11.87041 -11.71821 -11.42940 -11.25382 -11.11408 -10.91956 -10.18021 -10.04194 -8.99519 -7.96049 -5.24170 -0.97753 1.25306 1.46718 1.48017 1.57381 1.57467 1.97228 2.54856 2.79557 3.06802 3.29064 3.37658 3.52756 3.73427 3.85384 3.87989 3.90753 4.08028 4.21241 4.23245 4.35730 4.42862 4.46491 4.49840 4.51974 4.54338 4.61089 4.79770 4.82773 4.85913 4.98073 5.01332 5.01688 5.05330 5.09388 5.10752 5.21576 5.26046 5.29171 5.39274 5.43019 5.48639 5.55092 5.56463 6.22658 6.26838 6.91265 7.33829 8.08450 8.33433 9.27228 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.003001 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.096921 B = 9328.502779 C =11634.934771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -1.004 6.004 3 C 0.070 3.930 4 S 2.643 3.357 5 O -0.984 6.984 6 O -0.978 6.978 7 C -0.660 4.660 8 C 0.533 3.467 9 O -0.585 6.585 10 N -0.696 5.696 11 C 0.153 3.847 12 H 0.070 0.930 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.085 4.085 18 H 0.085 0.915 19 C 0.156 3.844 20 N -0.739 5.739 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.070 4.070 24 N -0.965 5.965 25 Si 0.969 3.031 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.295 1.295 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.419 0.581 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.004 0.996 47 H 0.028 0.972 48 H 0.377 0.623 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 19.315 12.601 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.845 5.845 3 C -0.075 4.075 4 S 2.734 3.266 5 O -0.974 6.974 6 O -0.968 6.968 7 C -0.790 4.790 8 C 0.318 3.682 9 O -0.467 6.467 10 N -0.346 5.346 11 C 0.048 3.952 12 H 0.088 0.912 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.104 0.896 19 C 0.030 3.970 20 N -0.382 5.382 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.799 3.201 26 H -0.194 1.194 27 H -0.217 1.217 28 H -0.222 1.222 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.210 0.790 36 H 0.220 0.780 37 H 0.257 0.743 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.022 0.978 47 H 0.046 0.954 48 H 0.210 0.790 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.965 18.434 14.084 23.953 hybrid contribution -1.130 -0.366 -1.653 2.035 sum 4.835 18.068 12.432 22.458 Atomic orbital electron populations 1.21854 0.76868 1.04023 1.04416 1.57208 1.16119 1.21312 1.89881 1.21897 0.97173 0.84299 1.04094 1.03871 0.72954 0.72843 0.76943 1.93534 1.65622 1.64175 1.74052 1.93515 1.45839 1.83471 1.73941 1.31062 1.12911 1.04470 1.30555 1.19755 0.78787 0.85632 0.84021 1.90836 1.55900 1.62026 1.37896 1.45912 1.56542 1.24259 1.07927 1.21018 0.92428 0.84419 0.97291 0.91203 1.21869 0.92750 0.98938 1.02464 1.21483 1.00578 0.95668 0.97274 1.21541 0.94357 1.01369 0.97811 1.21446 0.95718 0.95763 1.01508 1.21436 0.94487 0.98076 0.96385 0.89646 1.20813 0.93837 0.95864 0.86535 1.42508 1.06231 1.78440 1.11019 1.19609 0.86756 1.34809 0.96532 0.91152 1.25485 1.01283 1.02975 0.96566 1.69799 1.32894 1.53718 1.05197 0.85136 0.80246 0.76966 0.77782 1.19374 1.21707 1.22248 0.90602 0.90590 0.88994 0.89807 0.88554 0.90998 0.78975 0.77955 0.74293 0.89988 0.92128 0.92424 0.89789 0.91030 0.91117 0.92855 0.92871 0.97839 0.95410 0.79024 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.62 127.77 1.36 2.10 16 2 N -1.00 -13.65 3.52 -562.70 -1.98 -15.62 16 3 C 0.07 0.60 10.68 127.77 1.37 1.97 16 4 S 2.64 59.14 4.55 -56.49 -0.26 58.88 16 5 O -0.98 -30.47 16.57 -127.64 -2.11 -32.59 16 6 O -0.98 -28.28 16.57 -127.64 -2.12 -30.39 16 7 C -0.66 -9.96 6.66 71.24 0.47 -9.49 16 8 C 0.53 13.53 7.81 87.66 0.68 14.21 16 9 O -0.58 -20.32 15.53 -3.04 -0.05 -20.36 16 10 N -0.70 -15.85 4.31 -442.53 -1.91 -17.75 16 11 C 0.15 4.04 1.90 44.99 0.09 4.13 16 12 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 13 C -0.12 -2.70 5.49 30.59 0.17 -2.53 16 14 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 15 C -0.11 -2.56 5.92 30.60 0.18 -2.38 16 16 C -0.11 -3.16 5.08 30.59 0.16 -3.00 16 17 C -0.08 -2.49 1.80 -10.80 -0.02 -2.51 16 18 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 19 C 0.16 6.01 5.57 86.38 0.48 6.49 16 20 N -0.74 -36.05 5.33 -343.44 -1.83 -37.88 16 21 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 24 N -0.97 -57.48 13.06 21.65 0.28 -57.20 16 25 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 29 H 0.08 0.99 6.87 -2.39 -0.02 0.98 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.10 0.48 8.07 -2.38 -0.02 0.46 16 34 H 0.07 0.85 6.91 -2.39 -0.02 0.83 16 35 H 0.19 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.20 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.42 7.32 8.39 -92.71 -0.78 6.54 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.05 1.88 7.18 -2.39 -0.02 1.86 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.03 1.02 7.30 -2.39 -0.02 1.00 16 48 H 0.38 19.33 6.85 -92.71 -0.64 18.70 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -83.03 402.54 -1.98 -85.01 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.46 Total: 29.76 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 6.42 Total: -9.24 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -5.43 Total: -128.45 kcal Atomic # 8 Polarization: -79.06 SS G_CDS: -4.28 Total: -83.34 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 59.14 SS G_CDS: -0.26 Total: 58.88 kcal Total: -83.03 -1.98 -85.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733082558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.673 kcal (2) G-P(sol) polarization free energy of solvation -83.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds