Wall clock time and date at job start Wed Apr 1 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47403 * 2 1 4 4 C 1.36939 * 119.99805 * 275.24075 * 3 2 1 5 5 H 1.08004 * 119.99604 * 37.69091 * 4 3 2 6 6 C 1.38805 * 119.99989 * 217.68873 * 4 3 2 7 7 N 1.31621 * 119.99960 * 21.68504 * 6 4 3 8 8 Si 1.86797 * 120.00214 * 201.67690 * 6 4 3 9 9 H 1.48503 * 109.47211 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46888 * 120.00281 * 8 6 4 11 11 H 1.48498 * 109.47305 * 240.00157 * 8 6 4 12 12 C 1.46496 * 119.99938 * 95.23463 * 3 2 1 13 13 C 1.52998 * 109.47280 * 270.00276 * 12 3 2 14 14 C 1.53360 * 109.41849 * 295.12954 * 13 12 3 15 15 C 1.53198 * 109.14715 * 178.67295 * 14 13 12 16 16 N 1.46929 * 108.89100 * 54.58205 * 15 14 13 17 17 C 1.34773 * 120.63145 * 126.34249 * 16 15 14 18 18 O 1.21279 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00024 * 179.97438 * 17 16 15 20 20 S 1.81402 * 109.46968 * 179.97438 * 19 17 16 21 21 O 1.42100 * 110.53969 * 291.62172 * 20 19 17 22 22 O 1.42102 * 110.54229 * 68.37156 * 20 19 17 23 23 N 1.65600 * 104.44805 * 179.97438 * 20 19 17 24 24 C 1.46496 * 119.99936 * 64.99617 * 23 20 19 25 25 C 1.46930 * 118.73556 * 306.31648 * 16 15 14 26 26 C 1.53037 * 109.45973 * 175.00313 * 13 12 3 27 27 H 1.08998 * 109.47298 * 299.99896 * 1 2 3 28 28 H 1.08997 * 109.47029 * 60.00217 * 1 2 3 29 29 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47634 * 239.99678 * 2 1 3 31 31 H 1.09005 * 109.47219 * 119.99942 * 2 1 3 32 32 H 0.97002 * 119.99971 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46607 * 150.00863 * 12 3 2 34 34 H 1.08989 * 109.47533 * 30.00673 * 12 3 2 35 35 H 1.08995 * 109.46214 * 55.02706 * 13 12 3 36 36 H 1.09001 * 109.68255 * 58.71141 * 14 13 12 37 37 H 1.08994 * 109.47186 * 298.51062 * 14 13 12 38 38 H 1.08994 * 109.58582 * 294.72020 * 15 14 13 39 39 H 1.09000 * 109.58163 * 174.43358 * 15 14 13 40 40 H 1.09004 * 109.46733 * 299.99546 * 19 17 16 41 41 H 1.08998 * 109.47118 * 59.99548 * 19 17 16 42 42 H 0.96994 * 119.99721 * 245.00113 * 23 20 19 43 43 H 1.09003 * 109.47239 * 180.02562 * 24 23 20 44 44 H 1.08998 * 109.47743 * 300.00301 * 24 23 20 45 45 H 1.08999 * 109.47329 * 60.00031 * 24 23 20 46 46 H 1.09006 * 109.58412 * 173.40029 * 25 16 15 47 47 H 1.09002 * 109.58683 * 293.67854 * 25 16 15 48 48 H 1.08996 * 109.50055 * 61.43992 * 26 13 12 49 49 H 1.08999 * 109.52582 * 301.34965 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1445 2.0628 -1.1810 5 1 1.4117 1.9284 -1.9629 6 6 3.2140 2.9265 -1.3730 7 7 4.3071 2.7908 -0.6526 8 14 3.1021 4.2813 -2.6541 9 1 1.7781 4.2211 -3.3240 10 1 3.2626 5.6016 -1.9936 11 1 4.1764 4.0987 -3.6629 12 6 2.3717 2.0332 1.2634 13 6 1.1404 2.7390 1.8349 14 6 0.7199 3.8736 0.8926 15 6 -0.5326 4.5545 1.4537 16 7 -0.2639 4.9821 2.8334 17 6 -0.4683 6.2604 3.2083 18 8 -0.8774 7.0703 2.4035 19 6 -0.1886 6.6835 4.6274 20 16 -0.5584 8.4494 4.8160 21 8 0.3725 9.2347 4.0840 22 8 -1.9564 8.6803 4.7082 23 7 -0.2120 8.7770 6.4019 24 6 1.1654 8.6678 6.8884 25 6 0.2313 3.9895 3.7969 26 6 1.4760 3.3138 3.2130 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.0544 3.3946 -0.7865 33 1 3.1603 2.7646 1.0866 34 1 2.7231 1.2843 1.9729 35 1 0.3230 2.0242 1.9288 36 1 0.5019 3.4684 -0.0955 37 1 1.5273 4.6018 0.8178 38 1 -1.3657 3.8517 1.4445 39 1 -0.7804 5.4231 0.8436 40 1 -0.8138 6.1062 5.3086 41 1 0.8615 6.5057 4.8593 42 1 -0.9212 9.0411 7.0086 43 1 1.1974 8.9193 7.9486 44 1 1.5212 7.6473 6.7466 45 1 1.8028 9.3552 6.3323 46 1 0.4898 4.4856 4.7324 47 1 -0.5405 3.2421 3.9808 48 1 2.2764 4.0472 3.1162 49 1 1.7975 2.5095 3.8747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733920482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:35 Heat of formation + Delta-G solvation = -87.424722 kcal Electronic energy + Delta-G solvation = -30372.378670 eV Core-core repulsion = 26269.351726 eV Total energy + Delta-G solvation = -4103.026944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.26574 -37.81455 -37.27470 -36.11035 -35.84696 -35.34848 -32.95517 -31.88992 -31.53311 -29.98787 -28.84369 -26.67316 -26.38139 -24.27051 -23.01174 -22.52440 -20.74897 -20.14814 -19.64071 -18.85145 -18.24991 -17.25849 -16.77865 -16.65677 -16.54131 -15.91321 -15.37706 -14.90056 -14.87675 -14.26140 -14.16927 -14.04030 -13.79998 -13.61176 -13.52065 -13.18972 -13.07641 -12.87406 -12.59752 -12.50326 -12.27401 -12.22222 -12.14170 -11.91259 -11.73952 -11.38562 -11.29735 -11.15337 -10.94908 -10.81718 -10.56650 -10.50323 -10.40728 -10.16531 -10.06788 -9.98594 -9.92677 -9.58290 -9.46088 -8.62862 -8.45538 -6.56280 -5.80342 -3.38002 -0.08883 2.31529 2.46838 2.85987 3.35378 3.45943 3.47499 3.58748 3.92444 4.02511 4.46609 4.56920 4.58514 4.71917 4.85772 5.00240 5.08454 5.23438 5.32190 5.33016 5.33332 5.43530 5.49973 5.57799 5.73867 5.87652 5.97450 5.97909 6.17373 6.19036 6.32275 6.36106 6.39486 6.48518 6.52013 6.61956 6.77134 6.88350 6.93457 6.96954 7.13058 7.22617 7.26793 7.67514 7.81214 7.86816 8.50938 9.19070 9.81335 10.40156 11.18688 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003042 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.351223 B = 9201.279719 C = 9878.098042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.885 5.885 8 Si 0.884 3.116 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.290 1.290 12 C 0.153 3.847 13 C -0.104 4.104 14 C -0.116 4.116 15 C 0.104 3.896 16 N -0.590 5.590 17 C 0.540 3.460 18 O -0.543 6.543 19 C -0.673 4.673 20 S 2.647 3.353 21 O -0.936 6.936 22 O -0.944 6.944 23 N -1.127 6.127 24 C 0.078 3.922 25 C 0.104 3.896 26 C -0.131 4.131 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.253 0.747 33 H 0.093 0.907 34 H 0.021 0.979 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.418 0.582 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 4.120 18.927 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.217 1.217 12 C 0.027 3.973 13 C -0.125 4.125 14 C -0.153 4.153 15 C -0.017 4.017 16 N -0.322 5.322 17 C 0.325 3.675 18 O -0.422 6.422 19 C -0.801 4.801 20 S 2.733 3.267 21 O -0.926 6.926 22 O -0.933 6.933 23 N -0.887 5.887 24 C -0.068 4.068 25 C -0.019 4.019 26 C -0.170 4.170 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.252 0.748 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.295 5.118 17.715 19.830 hybrid contribution 0.049 -0.006 0.161 0.168 sum -7.246 5.111 17.876 19.955 Atomic orbital electron populations 1.22370 1.00194 0.98805 1.01115 1.20826 0.91631 0.87527 0.98552 1.43751 1.76058 1.08088 1.02536 1.18930 1.04450 1.21022 0.94100 0.92353 1.25106 0.94210 1.01199 0.97746 1.70012 1.03077 1.37200 1.42469 0.86532 0.77867 0.82734 0.81558 1.19896 1.21215 1.21674 1.20925 0.94488 0.96259 0.85665 1.21908 1.01468 0.96871 0.92239 1.21965 0.95252 0.97136 1.00988 1.21995 0.99191 1.00146 0.80347 1.48056 1.63455 1.07969 1.12674 1.19063 0.78299 0.83204 0.86895 1.90839 1.47208 1.50917 1.53231 1.31093 1.13965 1.30753 1.04273 1.04173 0.74335 0.75875 0.72276 1.93604 1.65209 1.63779 1.69970 1.93593 1.31373 1.83636 1.84744 1.55606 1.16120 1.85378 1.31592 1.21548 0.81521 1.01817 1.01940 1.21903 0.97331 0.91284 0.91344 1.21977 0.96358 1.00114 0.98517 0.93818 0.93241 0.94772 0.94010 0.95062 0.93674 0.88950 0.96075 0.92455 0.87990 0.92241 0.91511 0.89249 0.82294 0.82342 0.74798 0.89809 0.92208 0.91049 0.90388 0.91041 0.91538 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.21 37.16 0.38 -2.43 16 2 C 0.14 2.81 6.44 -4.04 -0.03 2.78 16 3 N -0.58 -13.30 2.31 -173.25 -0.40 -13.70 16 4 C -0.26 -6.49 7.35 -15.06 -0.11 -6.60 16 5 H 0.06 1.52 7.92 -52.48 -0.42 1.10 16 6 C 0.02 0.47 4.94 -17.43 -0.09 0.39 16 7 N -0.89 -24.41 11.50 55.49 0.64 -23.77 16 8 Si 0.88 21.19 29.61 -169.99 -5.03 16.16 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C 0.15 3.22 4.84 -4.05 -0.02 3.20 16 13 C -0.10 -1.76 2.36 -90.42 -0.21 -1.97 16 14 C -0.12 -2.13 4.97 -26.44 -0.13 -2.26 16 15 C 0.10 1.68 6.42 -3.71 -0.02 1.65 16 16 N -0.59 -8.39 2.97 -172.76 -0.51 -8.90 16 17 C 0.54 8.06 7.72 -10.98 -0.08 7.98 16 18 O -0.54 -10.34 15.28 5.56 0.08 -10.25 16 19 C -0.67 -6.30 4.86 36.01 0.17 -6.12 16 20 S 2.65 30.66 4.60 -107.50 -0.49 30.16 16 21 O -0.94 -14.76 17.74 -57.55 -1.02 -15.78 16 22 O -0.94 -14.07 18.08 -57.55 -1.04 -15.11 16 23 N -1.13 -7.51 6.08 -16.64 -0.10 -7.61 16 24 C 0.08 0.37 11.03 59.84 0.66 1.03 16 25 C 0.10 1.14 6.34 -3.71 -0.02 1.12 16 26 C -0.13 -1.75 5.36 -26.61 -0.14 -1.89 16 27 H 0.04 0.72 6.47 -51.93 -0.34 0.38 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.03 0.58 7.83 -51.93 -0.41 0.18 16 32 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.09 2.27 5.54 -51.93 -0.29 1.98 16 34 H 0.02 0.43 7.86 -51.93 -0.41 0.02 16 35 H 0.06 0.95 6.47 -51.93 -0.34 0.62 16 36 H 0.10 2.12 6.27 -51.93 -0.33 1.79 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.55 7.00 -51.93 -0.36 1.19 16 40 H 0.16 0.88 7.94 -51.92 -0.41 0.46 16 41 H 0.16 1.01 7.32 -51.92 -0.38 0.63 16 42 H 0.42 1.98 8.92 -34.47 -0.31 1.67 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.06 0.17 7.73 -51.93 -0.40 -0.23 16 45 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 46 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -35.78 395.11 -9.62 -45.39 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.04 Total: 0.61 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 0.35 Total: -3.14 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.38 Total: -53.99 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.98 Total: -41.15 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 30.66 SS G_CDS: -0.49 Total: 30.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.78 -9.62 -45.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733920482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.032 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds