Wall clock time and date at job start Wed Apr 1 2020 04:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47403 * 2 1 4 4 C 1.36939 * 119.99805 * 275.24075 * 3 2 1 5 5 H 1.08004 * 119.99604 * 37.69091 * 4 3 2 6 6 C 1.38805 * 119.99989 * 217.68873 * 4 3 2 7 7 N 1.31621 * 119.99960 * 21.68504 * 6 4 3 8 8 Si 1.86797 * 120.00214 * 201.67690 * 6 4 3 9 9 H 1.48503 * 109.47211 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46888 * 120.00281 * 8 6 4 11 11 H 1.48498 * 109.47305 * 240.00157 * 8 6 4 12 12 C 1.46496 * 119.99938 * 95.23463 * 3 2 1 13 13 C 1.52998 * 109.47280 * 270.00276 * 12 3 2 14 14 C 1.53360 * 109.41849 * 295.12954 * 13 12 3 15 15 C 1.53198 * 109.14715 * 178.67295 * 14 13 12 16 16 N 1.46929 * 108.89100 * 54.58205 * 15 14 13 17 17 C 1.34773 * 120.63145 * 126.34249 * 16 15 14 18 18 O 1.21279 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00024 * 179.97438 * 17 16 15 20 20 S 1.81402 * 109.46968 * 179.97438 * 19 17 16 21 21 O 1.42100 * 110.53969 * 291.62172 * 20 19 17 22 22 O 1.42102 * 110.54229 * 68.37156 * 20 19 17 23 23 N 1.65600 * 104.44805 * 179.97438 * 20 19 17 24 24 C 1.46496 * 119.99936 * 64.99617 * 23 20 19 25 25 C 1.46930 * 118.73556 * 306.31648 * 16 15 14 26 26 C 1.53037 * 109.45973 * 175.00313 * 13 12 3 27 27 H 1.08998 * 109.47298 * 299.99896 * 1 2 3 28 28 H 1.08997 * 109.47029 * 60.00217 * 1 2 3 29 29 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47634 * 239.99678 * 2 1 3 31 31 H 1.09005 * 109.47219 * 119.99942 * 2 1 3 32 32 H 0.97002 * 119.99971 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46607 * 150.00863 * 12 3 2 34 34 H 1.08989 * 109.47533 * 30.00673 * 12 3 2 35 35 H 1.08995 * 109.46214 * 55.02706 * 13 12 3 36 36 H 1.09001 * 109.68255 * 58.71141 * 14 13 12 37 37 H 1.08994 * 109.47186 * 298.51062 * 14 13 12 38 38 H 1.08994 * 109.58582 * 294.72020 * 15 14 13 39 39 H 1.09000 * 109.58163 * 174.43358 * 15 14 13 40 40 H 1.09004 * 109.46733 * 299.99546 * 19 17 16 41 41 H 1.08998 * 109.47118 * 59.99548 * 19 17 16 42 42 H 0.96994 * 119.99721 * 245.00113 * 23 20 19 43 43 H 1.09003 * 109.47239 * 180.02562 * 24 23 20 44 44 H 1.08998 * 109.47743 * 300.00301 * 24 23 20 45 45 H 1.08999 * 109.47329 * 60.00031 * 24 23 20 46 46 H 1.09006 * 109.58412 * 173.40029 * 25 16 15 47 47 H 1.09002 * 109.58683 * 293.67854 * 25 16 15 48 48 H 1.08996 * 109.50055 * 61.43992 * 26 13 12 49 49 H 1.08999 * 109.52582 * 301.34965 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1445 2.0628 -1.1810 5 1 1.4117 1.9284 -1.9629 6 6 3.2140 2.9265 -1.3730 7 7 4.3071 2.7908 -0.6526 8 14 3.1021 4.2813 -2.6541 9 1 1.7781 4.2211 -3.3240 10 1 3.2626 5.6016 -1.9936 11 1 4.1764 4.0987 -3.6629 12 6 2.3717 2.0332 1.2634 13 6 1.1404 2.7390 1.8349 14 6 0.7199 3.8736 0.8926 15 6 -0.5326 4.5545 1.4537 16 7 -0.2639 4.9821 2.8334 17 6 -0.4683 6.2604 3.2083 18 8 -0.8774 7.0703 2.4035 19 6 -0.1886 6.6835 4.6274 20 16 -0.5584 8.4494 4.8160 21 8 0.3725 9.2347 4.0840 22 8 -1.9564 8.6803 4.7082 23 7 -0.2120 8.7770 6.4019 24 6 1.1654 8.6678 6.8884 25 6 0.2313 3.9895 3.7969 26 6 1.4760 3.3138 3.2130 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.0544 3.3946 -0.7865 33 1 3.1603 2.7646 1.0866 34 1 2.7231 1.2843 1.9729 35 1 0.3230 2.0242 1.9288 36 1 0.5019 3.4684 -0.0955 37 1 1.5273 4.6018 0.8178 38 1 -1.3657 3.8517 1.4445 39 1 -0.7804 5.4231 0.8436 40 1 -0.8138 6.1062 5.3086 41 1 0.8615 6.5057 4.8593 42 1 -0.9212 9.0411 7.0086 43 1 1.1974 8.9193 7.9486 44 1 1.5212 7.6473 6.7466 45 1 1.8028 9.3552 6.3323 46 1 0.4898 4.4856 4.7324 47 1 -0.5405 3.2421 3.9808 48 1 2.2764 4.0472 3.1162 49 1 1.7975 2.5095 3.8747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733920482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:34 Heat of formation + Delta-G solvation = -115.481649 kcal Electronic energy + Delta-G solvation = -30373.595310 eV Core-core repulsion = 26269.351726 eV Total energy + Delta-G solvation = -4104.243583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.42033 -39.18687 -38.27500 -37.39857 -37.08518 -35.89296 -34.31010 -33.75802 -32.63275 -31.09301 -30.35489 -28.23222 -26.79590 -25.93375 -24.16827 -23.95214 -22.15914 -21.59597 -20.65972 -19.93213 -19.15790 -18.55230 -18.12511 -17.75679 -17.43205 -16.87342 -16.82681 -16.36500 -15.80328 -15.74818 -15.56891 -15.16386 -14.89917 -14.83713 -14.59501 -14.27077 -14.23204 -13.99234 -13.80244 -13.66047 -13.57234 -13.26150 -13.18082 -13.17439 -13.02089 -12.98089 -12.66631 -12.51303 -12.31680 -12.25563 -12.11134 -12.00010 -11.90993 -11.74772 -11.57032 -11.39420 -11.08566 -10.96316 -10.51443 -10.42603 -9.79595 -8.48063 -7.78336 -5.38615 -0.93850 1.24086 1.36950 1.45452 1.49580 1.64383 1.93243 2.48596 2.74345 3.13380 3.15242 3.26079 3.72137 3.88176 3.92391 4.01831 4.15176 4.16425 4.23272 4.25052 4.39982 4.49428 4.53772 4.69405 4.70102 4.78877 4.81394 4.89609 4.91553 4.91952 4.96446 5.05842 5.06347 5.15703 5.25328 5.31780 5.36660 5.42354 5.51232 5.64920 5.68288 5.76836 5.97652 6.11477 6.18212 6.51772 6.77602 7.24260 7.95923 8.45781 9.14670 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003042 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.351223 B = 9201.279719 C = 9878.098042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.242 4.242 5 H 0.048 0.952 6 C -0.021 4.021 7 N -0.913 5.913 8 Si 0.924 3.076 9 H -0.269 1.269 10 H -0.298 1.298 11 H -0.292 1.292 12 C 0.154 3.846 13 C -0.093 4.093 14 C -0.105 4.105 15 C 0.111 3.889 16 N -0.591 5.591 17 C 0.525 3.475 18 O -0.597 6.597 19 C -0.655 4.655 20 S 2.649 3.351 21 O -0.992 6.992 22 O -0.988 6.988 23 N -1.109 6.109 24 C 0.063 3.937 25 C 0.101 3.899 26 C -0.127 4.127 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.047 0.953 32 H 0.248 0.752 33 H 0.055 0.945 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.211 0.789 41 H 0.198 0.802 42 H 0.429 0.571 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.049 0.951 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 2.341 22.742 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 N -0.321 5.321 4 C -0.373 4.373 5 H 0.066 0.934 6 C -0.219 4.219 7 N -0.557 5.557 8 Si 0.754 3.246 9 H -0.193 1.193 10 H -0.225 1.225 11 H -0.219 1.219 12 C 0.028 3.972 13 C -0.113 4.113 14 C -0.143 4.143 15 C -0.012 4.012 16 N -0.321 5.321 17 C 0.312 3.688 18 O -0.480 6.480 19 C -0.785 4.785 20 S 2.738 3.262 21 O -0.981 6.981 22 O -0.978 6.978 23 N -0.873 5.873 24 C -0.082 4.082 25 C -0.020 4.020 26 C -0.166 4.166 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.228 0.772 41 H 0.216 0.784 42 H 0.266 0.734 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.068 0.932 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.402 3.339 21.564 23.383 hybrid contribution 0.415 0.429 -0.995 1.160 sum -7.987 3.767 20.569 22.385 Atomic orbital electron populations 1.22169 0.97502 1.00554 1.00739 1.20954 0.93603 0.85833 0.98516 1.43991 1.76290 1.09423 1.02363 1.18983 1.03242 1.20373 0.94690 0.93388 1.25473 0.94354 1.02813 0.99252 1.70097 1.03566 1.37988 1.44076 0.85881 0.77782 0.80762 0.80178 1.19346 1.22529 1.21880 1.20878 0.95383 0.95697 0.85233 1.21703 0.99638 0.96086 0.93893 1.21744 0.95235 0.96961 1.00400 1.21724 0.98297 0.99351 0.81788 1.48166 1.63107 1.08644 1.12220 1.19933 0.77354 0.82739 0.88739 1.90826 1.49464 1.52320 1.55389 1.30966 1.17527 1.28598 1.01419 1.03625 0.72741 0.76796 0.73004 1.93543 1.66103 1.66350 1.72152 1.93530 1.33578 1.84873 1.85813 1.55113 1.17491 1.85044 1.29617 1.21903 0.79754 1.03323 1.03265 1.22253 0.96566 0.91384 0.91789 1.21942 0.97382 1.00699 0.96572 0.92793 0.94959 0.91916 0.95726 0.93443 0.94295 0.92722 0.95254 0.91047 0.91069 0.95936 0.89390 0.91676 0.77165 0.78438 0.73429 0.86920 0.89350 0.92803 0.85665 0.88378 0.93201 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.21 71.98 0.73 -4.01 16 2 C 0.14 5.25 6.44 86.38 0.56 5.80 16 3 N -0.60 -27.29 2.31 -702.03 -1.62 -28.91 16 4 C -0.24 -12.57 7.35 84.03 0.62 -11.96 16 5 H 0.05 2.56 7.92 -2.91 -0.02 2.54 16 6 C -0.02 -1.15 4.94 84.86 0.42 -0.74 16 7 N -0.91 -51.98 11.50 21.65 0.25 -51.74 16 8 Si 0.92 45.24 29.61 68.60 2.03 47.27 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 12 C 0.15 6.40 4.84 86.38 0.42 6.81 16 13 C -0.09 -2.98 2.36 -10.66 -0.03 -3.00 16 14 C -0.11 -3.93 4.97 30.78 0.15 -3.78 16 15 C 0.11 3.50 6.42 86.36 0.55 4.06 16 16 N -0.59 -15.23 2.97 -818.87 -2.43 -17.67 16 17 C 0.52 14.67 7.72 87.66 0.68 15.34 16 18 O -0.60 -23.19 15.28 -3.03 -0.05 -23.24 16 19 C -0.66 -9.55 4.86 71.24 0.35 -9.20 16 20 S 2.65 58.23 4.60 -56.49 -0.26 57.97 16 21 O -0.99 -31.95 17.74 -127.64 -2.26 -34.22 16 22 O -0.99 -29.37 18.08 -127.64 -2.31 -31.68 16 23 N -1.11 -11.78 6.08 -206.55 -1.25 -13.04 16 24 C 0.06 0.38 11.03 127.77 1.41 1.79 16 25 C 0.10 1.66 6.34 86.36 0.55 2.20 16 26 C -0.13 -2.93 5.36 30.67 0.16 -2.77 16 27 H 0.05 1.59 6.47 -2.39 -0.02 1.57 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.05 1.66 7.83 -2.38 -0.02 1.65 16 32 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.05 2.75 5.54 -2.39 -0.01 2.73 16 34 H 0.03 1.14 7.86 -2.39 -0.02 1.12 16 35 H 0.07 2.13 6.47 -2.39 -0.02 2.11 16 36 H 0.07 3.07 6.27 -2.39 -0.01 3.05 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 2.37 7.00 -2.39 -0.02 2.35 16 40 H 0.21 0.88 7.94 -2.39 -0.02 0.87 16 41 H 0.20 1.35 7.32 -2.39 -0.02 1.33 16 42 H 0.43 2.91 8.92 -96.75 -0.86 2.05 16 43 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.09 0.04 7.73 -2.39 -0.02 0.03 16 45 H 0.05 0.54 8.04 -2.39 -0.02 0.52 16 46 H 0.13 0.94 5.93 -2.38 -0.01 0.92 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -86.11 395.11 -1.25 -87.35 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.09 Total: 7.35 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.57 Total: 0.55 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -5.06 Total: -111.36 kcal Atomic # 8 Polarization: -84.52 SS G_CDS: -4.62 Total: -89.13 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 58.23 SS G_CDS: -0.26 Total: 57.97 kcal Total: -86.11 -1.25 -87.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733920482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.129 kcal (2) G-P(sol) polarization free energy of solvation -86.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds