Wall clock time and date at job start Wed Apr 1 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81404 * 109.46866 * 2 1 4 4 O 1.42101 * 110.54085 * 68.37566 * 3 2 1 5 5 O 1.42096 * 110.54134 * 291.62420 * 3 2 1 6 6 N 1.65605 * 104.44665 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99754 * 65.00384 * 6 3 2 8 8 H 1.09002 * 109.47391 * 24.99564 * 7 6 3 9 9 C 1.53002 * 109.46799 * 264.99661 * 7 6 3 10 10 C 1.50701 * 109.46992 * 144.99574 * 7 6 3 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 7 6 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 7 6 13 13 C 1.47417 * 125.64725 * 359.70014 * 12 10 7 14 14 C 1.55132 * 104.71956 * 155.81666 * 13 12 10 15 15 H 1.08999 * 111.22241 * 279.16753 * 14 13 12 16 16 N 1.46502 * 110.90297 * 155.27242 * 14 13 12 17 17 C 1.36942 * 120.00270 * 92.97789 * 16 14 13 18 18 H 1.07997 * 119.99392 * 359.97438 * 17 16 14 19 19 C 1.38806 * 120.00193 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00151 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47113 * 89.99951 * 21 19 17 23 23 H 1.48504 * 109.47285 * 210.00260 * 21 19 17 24 24 H 1.48501 * 109.47462 * 329.99853 * 21 19 17 25 25 C 1.55154 * 101.48912 * 37.29182 * 14 13 12 26 26 C 1.52999 * 110.72053 * 205.97320 * 25 14 13 27 27 C 1.53000 * 110.72103 * 82.69705 * 25 14 13 28 28 C 1.47020 * 125.64476 * 179.97438 * 12 10 7 29 29 H 1.08995 * 109.47146 * 60.00440 * 1 2 3 30 30 H 1.09001 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46957 * 299.99926 * 1 2 3 32 32 H 1.09002 * 109.47279 * 240.00243 * 2 1 3 33 33 H 1.08999 * 109.47049 * 120.00070 * 2 1 3 34 34 H 0.97000 * 119.99610 * 244.99996 * 6 3 2 35 35 H 1.09002 * 109.47075 * 299.99543 * 9 7 6 36 36 H 1.08996 * 109.47407 * 60.00500 * 9 7 6 37 37 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 38 38 H 1.09004 * 110.36484 * 274.73852 * 13 12 10 39 39 H 1.08995 * 110.37495 * 37.06136 * 13 12 10 40 40 H 0.97005 * 120.00025 * 272.96767 * 16 14 13 41 41 H 0.96998 * 120.00403 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47298 * 174.97601 * 26 25 14 43 43 H 1.09004 * 109.46815 * 294.97648 * 26 25 14 44 44 H 1.09005 * 109.47303 * 54.97047 * 26 25 14 45 45 H 1.08998 * 109.47243 * 305.02286 * 27 25 14 46 46 H 1.08999 * 109.47026 * 65.02229 * 27 25 14 47 47 H 1.08997 * 109.46716 * 185.02537 * 27 25 14 48 48 H 1.08998 * 109.88454 * 300.44771 * 28 12 10 49 49 H 1.09006 * 109.88151 * 61.45414 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7844 1.5654 0.0007 7 6 4.4675 0.9670 -1.1488 8 1 3.8509 1.0851 -2.0399 9 6 4.7019 -0.5217 -0.8845 10 6 5.7919 1.6544 -1.3597 11 8 6.1319 2.5551 -0.6220 12 7 6.5991 1.2676 -2.3674 13 6 6.3149 0.1874 -3.3294 14 6 7.1641 0.5390 -4.5791 15 1 6.6700 1.2923 -5.1927 16 7 7.4606 -0.6617 -5.3643 17 6 6.6395 -1.0235 -6.3989 18 1 5.7731 -0.4238 -6.6355 19 6 6.9208 -2.1609 -7.1431 20 7 7.9770 -2.8914 -6.8550 21 14 5.8003 -2.6546 -8.5538 22 1 6.2745 -2.0181 -9.8088 23 1 5.8213 -4.1314 -8.7091 24 1 4.4141 -2.2071 -8.2650 25 6 8.4515 1.1093 -3.9275 26 6 9.1521 2.0843 -4.8759 27 6 9.3965 -0.0214 -3.5160 28 6 7.9113 1.8493 -2.6856 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2982 1.8767 0.7623 35 1 5.3186 -0.6398 0.0065 36 1 3.7440 -1.0189 -0.7321 37 1 5.2106 -0.9668 -1.7396 38 1 6.6197 -0.7756 -2.9195 39 1 5.2549 0.1742 -3.5830 40 1 8.2387 -1.2005 -5.1516 41 1 8.1738 -3.6860 -7.3753 42 1 10.0016 2.5394 -4.3667 43 1 9.5022 1.5460 -5.7567 44 1 8.4515 2.8620 -5.1801 45 1 8.8673 -0.7192 -2.8671 46 1 9.7450 -0.5456 -4.4058 47 1 10.2504 0.3952 -2.9819 48 1 7.8026 2.9115 -2.9048 49 1 8.5913 1.7122 -1.8448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755758672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:34 Heat of formation + Delta-G solvation = -93.661933 kcal Electronic energy + Delta-G solvation = -30289.111440 eV Core-core repulsion = 26185.814030 eV Total energy + Delta-G solvation = -4103.297409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.36720 -38.35258 -37.31587 -36.17383 -35.63757 -34.28746 -33.53496 -33.29838 -30.91168 -30.11421 -27.69754 -27.06985 -26.48315 -24.66608 -24.16222 -23.54549 -21.45073 -19.70031 -19.57972 -18.74540 -18.20710 -17.41714 -16.94441 -16.58694 -16.23861 -15.85054 -15.64226 -14.93336 -14.74395 -14.54035 -14.12626 -13.93341 -13.77952 -13.70783 -13.56780 -13.15635 -12.97572 -12.85347 -12.66405 -12.48381 -12.31769 -12.24865 -12.24096 -12.07371 -11.93240 -11.88861 -11.81683 -11.58114 -11.29090 -11.09403 -10.96971 -10.91866 -10.63227 -10.52249 -10.28066 -10.10185 -9.96787 -9.76523 -9.57027 -9.07679 -8.45851 -7.15942 -5.92936 -3.23480 -0.02696 2.38164 2.62854 3.09104 3.34347 3.40885 3.41643 3.52157 3.90569 4.20584 4.30069 4.43442 4.48608 4.71458 4.77197 4.80682 4.84024 4.98154 5.07010 5.12683 5.18953 5.26620 5.41561 5.42337 5.51551 5.54049 5.57402 5.69224 5.72000 5.80645 5.88914 5.93503 5.96572 6.07099 6.11932 6.25618 6.26580 6.34333 6.48641 6.57692 6.66147 6.75833 6.80814 7.57179 7.64533 8.17430 8.25432 9.37761 9.90780 10.26054 11.28919 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003285 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.313751 B = 8520.817066 C =10360.366880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.612 3.388 4 O -0.956 6.956 5 O -0.952 6.952 6 N -1.101 6.101 7 C 0.131 3.869 8 H 0.118 0.882 9 C -0.184 4.184 10 C 0.528 3.472 11 O -0.543 6.543 12 N -0.607 5.607 13 C 0.065 3.935 14 C 0.180 3.820 15 H 0.071 0.929 16 N -0.709 5.709 17 C -0.250 4.250 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.088 4.088 26 C -0.129 4.129 27 C -0.134 4.134 28 C 0.121 3.879 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.425 0.575 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.390 0.610 41 H 0.257 0.743 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 3.840 13.303 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.704 3.296 4 O -0.946 6.946 5 O -0.942 6.942 6 N -0.861 5.861 7 C 0.020 3.980 8 H 0.135 0.865 9 C -0.243 4.243 10 C 0.314 3.686 11 O -0.420 6.420 12 N -0.340 5.340 13 C -0.061 4.061 14 C 0.067 3.933 15 H 0.089 0.911 16 N -0.350 5.350 17 C -0.381 4.381 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.089 4.089 26 C -0.187 4.187 27 C -0.191 4.191 28 C -0.002 4.002 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.262 0.738 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.227 0.773 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.621 5.034 13.433 16.244 hybrid contribution 0.028 -1.276 -0.408 1.340 sum -7.594 3.758 13.024 15.538 Atomic orbital electron populations 1.21507 0.90343 1.05198 1.03503 1.30649 1.07441 1.26343 1.12001 1.05010 0.72868 0.77280 0.74457 1.93608 1.82955 1.72954 1.45090 1.93624 1.83183 1.71879 1.45500 1.55396 1.25634 1.77561 1.27477 1.20620 0.93920 0.93431 0.90029 0.86451 1.22579 1.03673 0.93184 1.04837 1.20018 0.85293 0.83309 0.79998 1.90673 1.74794 1.30710 1.45867 1.48421 1.19388 1.36395 1.29811 1.23765 1.01779 0.89654 0.90904 1.21405 0.91347 0.90690 0.89824 0.91144 1.42452 1.31420 1.26141 1.34979 1.19267 1.05370 1.06686 1.06784 0.90951 1.24738 0.98004 0.97832 0.99686 1.69647 1.27765 1.17921 1.42304 0.86209 0.80055 0.77534 0.82462 1.21604 1.21754 1.20630 1.21887 0.96991 0.96027 0.94030 1.21686 0.99571 0.98197 0.99207 1.21714 0.98001 0.97518 1.01879 1.22070 0.83528 0.97492 0.97123 0.90811 0.89860 0.91001 0.84602 0.84672 0.73846 0.91015 0.91158 0.88980 0.90613 0.90963 0.77316 0.93305 0.93177 0.91340 0.92789 0.92631 0.90893 0.93252 0.91551 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.92 37.16 0.37 -0.56 16 2 C -0.63 -4.14 5.94 37.16 0.22 -3.92 16 3 S 2.61 27.34 5.44 -107.50 -0.58 26.75 16 4 O -0.96 -12.66 18.08 -57.54 -1.04 -13.70 16 5 O -0.95 -13.40 17.39 -57.54 -1.00 -14.40 16 6 N -1.10 -11.81 5.15 -5.88 -0.03 -11.84 16 7 C 0.13 1.50 2.57 -69.08 -0.18 1.32 16 8 H 0.12 1.27 7.19 -51.93 -0.37 0.90 16 9 C -0.18 -1.65 9.29 37.16 0.35 -1.31 16 10 C 0.53 7.77 7.28 -10.98 -0.08 7.69 16 11 O -0.54 -9.49 16.32 5.56 0.09 -9.40 16 12 N -0.61 -8.73 3.32 -170.38 -0.57 -9.30 16 13 C 0.06 0.96 4.51 -2.41 -0.01 0.95 16 14 C 0.18 3.09 2.97 -65.66 -0.19 2.90 16 15 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 16 N -0.71 -15.28 5.15 -51.24 -0.26 -15.54 16 17 C -0.25 -6.18 9.96 -15.06 -0.15 -6.33 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -25.66 13.06 55.49 0.72 -24.94 16 21 Si 0.91 20.76 29.55 -169.99 -5.02 15.74 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.09 -1.28 0.85 -152.68 -0.13 -1.41 16 26 C -0.13 -1.77 8.49 37.16 0.32 -1.45 16 27 C -0.13 -1.94 7.55 37.16 0.28 -1.66 16 28 C 0.12 1.71 6.04 -3.07 -0.02 1.69 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.14 0.72 6.78 -51.92 -0.35 0.37 16 33 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.42 4.54 8.17 -34.47 -0.28 4.26 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.45 5.78 -51.93 -0.30 0.15 16 37 H 0.09 0.91 4.98 -51.93 -0.26 0.65 16 38 H 0.08 1.14 6.64 -51.93 -0.34 0.79 16 39 H 0.07 1.02 7.34 -51.93 -0.38 0.64 16 40 H 0.39 8.90 5.45 -40.82 -0.22 8.68 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 45 H 0.05 0.82 7.42 -51.93 -0.39 0.43 16 46 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 49 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -33.42 395.19 -8.89 -42.32 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.83 Total: 10.70 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 0.67 Total: -2.33 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.14 Total: -61.62 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -1.95 Total: -37.51 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 27.34 SS G_CDS: -0.58 Total: 26.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.42 -8.89 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755758672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.346 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds