Wall clock time and date at job start Wed Apr 1 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81404 * 109.46866 * 2 1 4 4 O 1.42101 * 110.54085 * 68.37566 * 3 2 1 5 5 O 1.42096 * 110.54134 * 291.62420 * 3 2 1 6 6 N 1.65605 * 104.44665 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99754 * 65.00384 * 6 3 2 8 8 H 1.09002 * 109.47391 * 24.99564 * 7 6 3 9 9 C 1.53002 * 109.46799 * 264.99661 * 7 6 3 10 10 C 1.50701 * 109.46992 * 144.99574 * 7 6 3 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 7 6 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 7 6 13 13 C 1.47417 * 125.64725 * 359.70014 * 12 10 7 14 14 C 1.55132 * 104.71956 * 155.81666 * 13 12 10 15 15 H 1.08999 * 111.22241 * 279.16753 * 14 13 12 16 16 N 1.46502 * 110.90297 * 155.27242 * 14 13 12 17 17 C 1.36942 * 120.00270 * 92.97789 * 16 14 13 18 18 H 1.07997 * 119.99392 * 359.97438 * 17 16 14 19 19 C 1.38806 * 120.00193 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00151 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47113 * 89.99951 * 21 19 17 23 23 H 1.48504 * 109.47285 * 210.00260 * 21 19 17 24 24 H 1.48501 * 109.47462 * 329.99853 * 21 19 17 25 25 C 1.55154 * 101.48912 * 37.29182 * 14 13 12 26 26 C 1.52999 * 110.72053 * 205.97320 * 25 14 13 27 27 C 1.53000 * 110.72103 * 82.69705 * 25 14 13 28 28 C 1.47020 * 125.64476 * 179.97438 * 12 10 7 29 29 H 1.08995 * 109.47146 * 60.00440 * 1 2 3 30 30 H 1.09001 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46957 * 299.99926 * 1 2 3 32 32 H 1.09002 * 109.47279 * 240.00243 * 2 1 3 33 33 H 1.08999 * 109.47049 * 120.00070 * 2 1 3 34 34 H 0.97000 * 119.99610 * 244.99996 * 6 3 2 35 35 H 1.09002 * 109.47075 * 299.99543 * 9 7 6 36 36 H 1.08996 * 109.47407 * 60.00500 * 9 7 6 37 37 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 38 38 H 1.09004 * 110.36484 * 274.73852 * 13 12 10 39 39 H 1.08995 * 110.37495 * 37.06136 * 13 12 10 40 40 H 0.97005 * 120.00025 * 272.96767 * 16 14 13 41 41 H 0.96998 * 120.00403 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47298 * 174.97601 * 26 25 14 43 43 H 1.09004 * 109.46815 * 294.97648 * 26 25 14 44 44 H 1.09005 * 109.47303 * 54.97047 * 26 25 14 45 45 H 1.08998 * 109.47243 * 305.02286 * 27 25 14 46 46 H 1.08999 * 109.47026 * 65.02229 * 27 25 14 47 47 H 1.08997 * 109.46716 * 185.02537 * 27 25 14 48 48 H 1.08998 * 109.88454 * 300.44771 * 28 12 10 49 49 H 1.09006 * 109.88151 * 61.45414 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7844 1.5654 0.0007 7 6 4.4675 0.9670 -1.1488 8 1 3.8509 1.0851 -2.0399 9 6 4.7019 -0.5217 -0.8845 10 6 5.7919 1.6544 -1.3597 11 8 6.1319 2.5551 -0.6220 12 7 6.5991 1.2676 -2.3674 13 6 6.3149 0.1874 -3.3294 14 6 7.1641 0.5390 -4.5791 15 1 6.6700 1.2923 -5.1927 16 7 7.4606 -0.6617 -5.3643 17 6 6.6395 -1.0235 -6.3989 18 1 5.7731 -0.4238 -6.6355 19 6 6.9208 -2.1609 -7.1431 20 7 7.9770 -2.8914 -6.8550 21 14 5.8003 -2.6546 -8.5538 22 1 6.2745 -2.0181 -9.8088 23 1 5.8213 -4.1314 -8.7091 24 1 4.4141 -2.2071 -8.2650 25 6 8.4515 1.1093 -3.9275 26 6 9.1521 2.0843 -4.8759 27 6 9.3965 -0.0214 -3.5160 28 6 7.9113 1.8493 -2.6856 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2982 1.8767 0.7623 35 1 5.3186 -0.6398 0.0065 36 1 3.7440 -1.0189 -0.7321 37 1 5.2106 -0.9668 -1.7396 38 1 6.6197 -0.7756 -2.9195 39 1 5.2549 0.1742 -3.5830 40 1 8.2387 -1.2005 -5.1516 41 1 8.1738 -3.6860 -7.3753 42 1 10.0016 2.5394 -4.3667 43 1 9.5022 1.5460 -5.7567 44 1 8.4515 2.8620 -5.1801 45 1 8.8673 -0.7192 -2.8671 46 1 9.7450 -0.5456 -4.4058 47 1 10.2504 0.3952 -2.9819 48 1 7.8026 2.9115 -2.9048 49 1 8.5913 1.7122 -1.8448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755758672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:33 Heat of formation + Delta-G solvation = -119.485295 kcal Electronic energy + Delta-G solvation = -30290.231225 eV Core-core repulsion = 26185.814030 eV Total energy + Delta-G solvation = -4104.417194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.55411 -39.57653 -38.24940 -37.10060 -36.59524 -35.87534 -34.64809 -34.05872 -32.62430 -30.95936 -29.16801 -28.25616 -27.56943 -25.87051 -25.27257 -24.52153 -22.78190 -20.70879 -20.47565 -20.05936 -19.17195 -19.10015 -17.87053 -17.65132 -17.17722 -17.08307 -16.58670 -16.32484 -15.94735 -15.58248 -15.36376 -15.07808 -14.98841 -14.74111 -14.40503 -14.32785 -14.19235 -13.82098 -13.62442 -13.41617 -13.33705 -13.29721 -13.26065 -13.17804 -12.98291 -12.85401 -12.79174 -12.73422 -12.71328 -12.42483 -12.35190 -12.06675 -12.02444 -11.80396 -11.61721 -11.51465 -11.29407 -11.08642 -10.83893 -10.54790 -9.69124 -8.96234 -7.89416 -5.17449 -0.80479 1.48027 1.53051 1.53718 1.55750 1.62033 1.99150 2.61173 2.76798 3.16606 3.23343 3.41863 3.59539 3.71426 3.78618 3.87727 3.88507 3.91117 4.01177 4.15696 4.22220 4.34449 4.38810 4.44601 4.46876 4.65516 4.69764 4.74956 4.80175 4.85584 4.87498 4.87963 4.92574 5.04356 5.08030 5.13711 5.17405 5.20821 5.26511 5.33830 5.45088 5.53165 5.61297 5.90372 6.32301 6.46626 7.01209 7.41646 8.13506 8.38904 9.33255 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003285 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.313751 B = 8520.817066 C =10360.366880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.607 4.607 3 S 2.609 3.391 4 O -0.991 6.991 5 O -0.997 6.997 6 N -1.102 6.102 7 C 0.131 3.869 8 H 0.124 0.876 9 C -0.181 4.181 10 C 0.522 3.478 11 O -0.574 6.574 12 N -0.605 5.605 13 C 0.078 3.922 14 C 0.170 3.830 15 H 0.062 0.938 16 N -0.717 5.717 17 C -0.239 4.239 18 H 0.077 0.923 19 C -0.064 4.064 20 N -0.964 5.964 21 Si 0.962 3.038 22 H -0.294 1.294 23 H -0.299 1.299 24 H -0.268 1.268 25 C -0.079 4.079 26 C -0.126 4.126 27 C -0.127 4.127 28 C 0.122 3.878 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.424 0.576 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.383 0.617 41 H 0.250 0.750 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 3.085 14.280 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.741 4.741 3 S 2.706 3.294 4 O -0.982 6.982 5 O -0.987 6.987 6 N -0.861 5.861 7 C 0.020 3.980 8 H 0.141 0.859 9 C -0.240 4.240 10 C 0.310 3.690 11 O -0.454 6.454 12 N -0.338 5.338 13 C -0.048 4.048 14 C 0.059 3.941 15 H 0.080 0.920 16 N -0.358 5.358 17 C -0.371 4.371 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.614 5.614 21 Si 0.792 3.208 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.193 1.193 25 C -0.081 4.081 26 C -0.183 4.183 27 C -0.185 4.185 28 C -0.001 4.001 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.260 0.740 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.218 0.782 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.796 4.364 14.426 17.451 hybrid contribution 0.371 -0.978 -0.654 1.234 sum -8.425 3.386 13.772 16.496 Atomic orbital electron populations 1.21704 0.89907 1.06692 1.03665 1.30429 1.07642 1.21369 1.14624 1.04944 0.72472 0.79122 0.72831 1.93557 1.83270 1.75287 1.46046 1.93562 1.83644 1.74622 1.46901 1.55305 1.25635 1.77951 1.27173 1.20724 0.92009 0.94653 0.90586 0.85889 1.22598 1.05559 0.91134 1.04660 1.20662 0.86204 0.82895 0.79278 1.90658 1.75733 1.32128 1.46894 1.48421 1.19499 1.36156 1.29697 1.23475 1.01779 0.89768 0.89729 1.21559 0.93227 0.89036 0.90240 0.92035 1.42515 1.30894 1.27275 1.35083 1.19607 1.05093 1.05822 1.06573 0.90472 1.25367 0.99492 0.98596 1.02196 1.69779 1.29614 1.18447 1.43588 0.85316 0.79181 0.76460 0.79828 1.22181 1.22622 1.19313 1.21812 0.95934 0.96165 0.94154 1.21658 1.00398 0.97858 0.98435 1.21642 0.98683 0.97216 1.00916 1.22059 0.83705 0.97378 0.96931 0.91106 0.87522 0.90772 0.82436 0.81670 0.73979 0.90572 0.87920 0.89756 0.90341 0.89907 0.78159 0.94106 0.90915 0.93286 0.92453 0.92960 0.93232 0.90964 0.91484 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.92 71.98 0.71 -0.80 16 2 C -0.61 -5.67 5.94 71.98 0.43 -5.25 16 3 S 2.61 51.68 5.44 -56.49 -0.31 51.38 16 4 O -0.99 -25.98 18.08 -127.65 -2.31 -28.29 16 5 O -1.00 -27.84 17.39 -127.65 -2.22 -30.06 16 6 N -1.10 -22.24 5.15 -172.52 -0.89 -23.13 16 7 C 0.13 2.75 2.57 44.25 0.11 2.87 16 8 H 0.12 2.44 7.19 -2.39 -0.02 2.42 16 9 C -0.18 -2.69 9.29 71.98 0.67 -2.02 16 10 C 0.52 14.73 7.28 87.66 0.64 15.36 16 11 O -0.57 -19.74 16.32 -3.03 -0.05 -19.79 16 12 N -0.60 -16.56 3.32 -811.36 -2.69 -19.26 16 13 C 0.08 2.20 4.51 86.93 0.39 2.59 16 14 C 0.17 5.72 2.97 46.46 0.14 5.86 16 15 H 0.06 2.18 7.99 -2.39 -0.02 2.16 16 16 N -0.72 -30.78 5.15 -316.01 -1.63 -32.41 16 17 C -0.24 -11.71 9.96 84.03 0.84 -10.87 16 18 H 0.08 3.64 7.83 -2.91 -0.02 3.61 16 19 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 20 N -0.96 -53.96 13.06 21.65 0.28 -53.68 16 21 Si 0.96 42.63 29.55 68.60 2.03 44.65 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 C -0.08 -2.23 0.85 -50.99 -0.04 -2.27 16 26 C -0.13 -3.32 8.49 71.98 0.61 -2.71 16 27 C -0.13 -3.57 7.55 71.98 0.54 -3.02 16 28 C 0.12 3.27 6.04 86.73 0.52 3.79 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.16 0.90 6.78 -2.39 -0.02 0.89 16 33 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.42 8.80 8.17 -96.74 -0.79 8.01 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 0.84 5.78 -2.39 -0.01 0.83 16 37 H 0.08 1.43 4.98 -2.39 -0.01 1.42 16 38 H 0.08 2.23 6.64 -2.38 -0.02 2.21 16 39 H 0.08 2.17 7.34 -2.39 -0.02 2.16 16 40 H 0.38 17.64 5.45 -92.70 -0.51 17.14 16 41 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 45 H 0.05 1.48 7.42 -2.39 -0.02 1.47 16 46 H 0.05 1.64 6.75 -2.39 -0.02 1.62 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 1.81 7.82 -2.39 -0.02 1.79 16 49 H 0.07 1.86 7.85 -2.38 -0.02 1.84 16 Total: -1.00 -73.21 395.19 -2.08 -75.29 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.33 Total: 34.61 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.03 Total: 0.68 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.93 Total: -128.47 kcal Atomic # 8 Polarization: -73.57 SS G_CDS: -4.58 Total: -78.14 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 51.68 SS G_CDS: -0.31 Total: 51.38 kcal Total: -73.21 -2.08 -75.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755758672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.191 kcal (2) G-P(sol) polarization free energy of solvation -73.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds