Wall clock time and date at job start Wed Apr 1 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81396 * 109.47098 * 2 1 4 4 O 1.42102 * 110.54318 * 291.62440 * 3 2 1 5 5 O 1.42107 * 110.54578 * 68.37502 * 3 2 1 6 6 N 1.65601 * 104.44997 * 179.97438 * 3 2 1 7 7 C 1.46505 * 119.99633 * 65.00347 * 6 3 2 8 8 H 1.08997 * 109.46917 * 334.99375 * 7 6 3 9 9 C 1.52998 * 109.47249 * 94.99881 * 7 6 3 10 10 C 1.50695 * 109.46721 * 214.99965 * 7 6 3 11 11 O 1.21283 * 120.00142 * 333.05138 * 10 7 6 12 12 N 1.34777 * 120.00356 * 153.05821 * 10 7 6 13 13 C 1.47431 * 125.64077 * 4.59797 * 12 10 7 14 14 C 1.55133 * 104.71868 * 155.81826 * 13 12 10 15 15 H 1.08998 * 110.90465 * 155.26900 * 14 13 12 16 16 N 1.46498 * 111.22495 * 279.17603 * 14 13 12 17 17 C 1.36940 * 119.99546 * 267.20672 * 16 14 13 18 18 H 1.08001 * 120.00344 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99821 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99951 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46990 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47189 * 119.99491 * 21 19 17 24 24 H 1.48495 * 109.47614 * 240.00024 * 21 19 17 25 25 C 1.55161 * 101.48660 * 37.29194 * 14 13 12 26 26 C 1.52992 * 110.72047 * 205.96573 * 25 14 13 27 27 C 1.53005 * 110.86986 * 82.76737 * 25 14 13 28 28 C 1.47018 * 125.65458 * 184.90463 * 12 10 7 29 29 H 1.09002 * 109.46651 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46761 * 299.99903 * 1 2 3 31 31 H 1.08995 * 109.46863 * 60.00473 * 1 2 3 32 32 H 1.09003 * 109.46666 * 119.99840 * 2 1 3 33 33 H 1.08995 * 109.47015 * 239.99485 * 2 1 3 34 34 H 0.96998 * 120.00073 * 244.99442 * 6 3 2 35 35 H 1.08998 * 109.47136 * 54.72080 * 9 7 6 36 36 H 1.08998 * 109.47102 * 174.72748 * 9 7 6 37 37 H 1.08999 * 109.47025 * 294.72280 * 9 7 6 38 38 H 1.09005 * 110.36624 * 274.74194 * 13 12 10 39 39 H 1.08992 * 110.36822 * 37.07198 * 13 12 10 40 40 H 0.96991 * 120.00179 * 87.20604 * 16 14 13 41 41 H 0.97003 * 120.00018 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47211 * 174.97319 * 26 25 14 43 43 H 1.08999 * 109.47713 * 294.98276 * 26 25 14 44 44 H 1.09007 * 109.47082 * 54.98190 * 26 25 14 45 45 H 1.09005 * 109.46848 * 304.93365 * 27 25 14 46 46 H 1.09001 * 109.46995 * 64.93612 * 27 25 14 47 47 H 1.09006 * 109.46930 * 184.93834 * 27 25 14 48 48 H 1.08997 * 109.88182 * 300.44439 * 28 12 10 49 49 H 1.08998 * 109.87984 * 61.45025 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 -1.2370 5 8 1.8386 2.3439 1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4676 0.9669 -1.1489 8 1 3.7819 0.3009 -1.6727 9 6 4.9304 2.0728 -2.0995 10 6 5.6624 0.1829 -0.6707 11 8 6.2140 0.4895 0.3649 12 7 6.1181 -0.8591 -1.3940 13 6 5.6065 -1.2798 -2.7111 14 6 6.7863 -2.0451 -3.3662 15 1 6.4244 -2.7537 -4.1111 16 7 7.7576 -1.1193 -3.9542 17 6 7.6531 -0.7637 -5.2725 18 1 6.8549 -1.1659 -5.8787 19 6 8.5737 0.1130 -5.8299 20 7 9.5468 0.6029 -5.0912 21 14 8.4317 0.5977 -7.6283 22 1 7.2600 -0.0847 -8.2338 23 1 8.2553 2.0685 -7.7321 24 1 9.6663 0.1951 -8.3485 25 6 7.3920 -2.7841 -2.1437 26 6 8.8767 -3.0765 -2.3690 27 6 6.6258 -4.0763 -1.8534 28 6 7.2033 -1.7682 -0.9974 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 4.2983 1.8767 0.7622 35 1 5.5407 2.7909 -1.5517 36 1 5.5192 1.6359 -2.9059 37 1 4.0608 2.5796 -2.5179 38 1 4.7450 -1.9369 -2.5913 39 1 5.3402 -0.4092 -3.3104 40 1 8.4746 -0.7584 -3.4099 41 1 10.1899 1.2158 -5.4806 42 1 9.3020 -3.5140 -1.4659 43 1 8.9877 -3.7750 -3.1984 44 1 9.3983 -2.1484 -2.6034 45 1 5.5671 -3.8501 -1.7258 46 1 6.7518 -4.7682 -2.6862 47 1 7.0127 -4.5310 -0.9414 48 1 8.1235 -1.2037 -0.8472 49 1 6.9337 -2.2886 -0.0785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755758674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:42 Heat of formation + Delta-G solvation = -96.629646 kcal Electronic energy + Delta-G solvation = -30687.670731 eV Core-core repulsion = 26584.244632 eV Total energy + Delta-G solvation = -4103.426099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.26285 -38.32664 -37.27719 -36.14092 -35.40301 -34.00281 -33.50023 -33.33566 -30.81998 -29.97772 -28.13684 -26.76863 -26.49036 -24.40687 -24.10693 -23.42205 -21.61195 -19.57586 -19.41558 -18.87867 -18.14490 -17.27317 -16.79281 -16.51623 -16.28044 -15.88716 -15.51569 -14.99219 -14.60380 -14.24131 -14.12540 -14.03087 -13.85064 -13.60932 -13.25492 -13.00664 -12.90030 -12.85534 -12.52410 -12.42178 -12.28063 -12.24521 -12.14049 -11.99810 -11.94563 -11.78742 -11.63697 -11.50851 -11.45381 -11.06531 -10.97218 -10.95535 -10.62770 -10.53872 -10.27342 -10.00715 -9.95755 -9.73013 -9.42258 -9.09906 -8.36714 -7.11293 -5.89566 -3.20235 0.02287 2.38160 2.75837 3.20692 3.35952 3.41831 3.44629 3.58200 3.93118 4.24717 4.40238 4.46556 4.50126 4.66015 4.79947 4.86337 4.99608 5.09573 5.15045 5.17718 5.26869 5.34126 5.35098 5.51915 5.54844 5.59365 5.65927 5.77162 5.86340 5.91038 5.94400 6.02488 6.08172 6.13055 6.15530 6.26092 6.31787 6.38936 6.49288 6.54301 6.67789 6.83845 6.86569 7.58533 7.74728 8.27464 8.28445 9.39990 9.93946 10.28418 11.32018 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.003529 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.701447 B = 7932.438965 C = 9139.123571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.637 4.637 3 S 2.612 3.388 4 O -0.948 6.948 5 O -0.957 6.957 6 N -1.103 6.103 7 C 0.143 3.857 8 H 0.098 0.902 9 C -0.167 4.167 10 C 0.526 3.474 11 O -0.544 6.544 12 N -0.598 5.598 13 C 0.057 3.943 14 C 0.180 3.820 15 H 0.076 0.924 16 N -0.707 5.707 17 C -0.250 4.250 18 H 0.073 0.927 19 C -0.005 4.005 20 N -0.926 5.926 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.091 4.091 26 C -0.126 4.126 27 C -0.131 4.131 28 C 0.122 3.878 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.426 0.574 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 -6.957 9.339 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.766 4.766 3 S 2.703 3.297 4 O -0.938 6.938 5 O -0.947 6.947 6 N -0.863 5.863 7 C 0.032 3.968 8 H 0.116 0.884 9 C -0.227 4.227 10 C 0.312 3.688 11 O -0.422 6.422 12 N -0.331 5.331 13 C -0.069 4.069 14 C 0.067 3.933 15 H 0.093 0.907 16 N -0.347 5.347 17 C -0.381 4.381 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.573 5.573 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.092 4.092 26 C -0.184 4.184 27 C -0.189 4.189 28 C -0.001 4.001 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.223 0.777 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.356 -5.946 9.575 18.251 hybrid contribution 0.633 -0.210 -0.521 0.846 sum -13.722 -6.156 9.054 17.555 Atomic orbital electron populations 1.21495 0.90309 1.05120 1.03497 1.30550 1.07426 1.26767 1.11835 1.05058 0.72854 0.77286 0.74510 1.93626 1.83209 1.71717 1.45257 1.93609 1.82990 1.72994 1.45099 1.55534 1.25625 1.77205 1.27985 1.20576 0.93920 0.95516 0.86759 0.88417 1.22252 1.03349 0.97950 0.99105 1.20150 0.85350 0.79545 0.83795 1.90665 1.59222 1.67435 1.24839 1.48305 1.35810 1.28513 1.20433 1.23658 0.99079 1.00800 0.83339 1.21362 0.88909 0.91059 0.91953 0.90654 1.42379 1.30970 1.51909 1.09432 1.19256 1.10121 1.22155 0.86522 0.90902 1.24747 0.97602 0.99843 0.98028 1.69671 1.17077 1.35313 1.35232 0.86159 0.77266 0.78080 0.84856 1.20467 1.21802 1.21855 1.21944 0.97355 0.94303 0.95636 1.21639 0.93475 1.02920 1.00376 1.21760 0.99537 0.96213 1.01360 1.22009 0.90593 0.90694 0.96777 0.89961 0.90982 0.90795 0.84811 0.85025 0.73678 0.91214 0.89592 0.89924 0.92396 0.89750 0.77708 0.93366 0.93765 0.92250 0.90907 0.92854 0.92189 0.92811 0.91326 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.92 37.16 0.37 -0.59 16 2 C -0.64 -4.67 6.68 37.16 0.25 -4.43 16 3 S 2.61 28.46 5.38 -107.50 -0.58 27.88 16 4 O -0.95 -12.91 17.21 -57.54 -0.99 -13.90 16 5 O -0.96 -13.12 18.08 -57.54 -1.04 -14.16 16 6 N -1.10 -13.11 5.31 -5.88 -0.03 -13.14 16 7 C 0.14 1.87 2.39 -69.08 -0.16 1.71 16 8 H 0.10 0.99 6.51 -51.93 -0.34 0.66 16 9 C -0.17 -2.41 9.41 37.16 0.35 -2.06 16 10 C 0.53 8.33 7.04 -10.99 -0.08 8.25 16 11 O -0.54 -10.13 16.47 5.56 0.09 -10.04 16 12 N -0.60 -9.13 3.32 -170.39 -0.57 -9.70 16 13 C 0.06 0.83 5.66 -2.40 -0.01 0.81 16 14 C 0.18 2.97 2.96 -65.66 -0.19 2.77 16 15 H 0.08 1.22 7.99 -51.93 -0.42 0.80 16 16 N -0.71 -15.35 4.57 -51.23 -0.23 -15.59 16 17 C -0.25 -6.16 9.96 -15.06 -0.15 -6.31 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 20 N -0.93 -26.22 13.06 55.49 0.72 -25.50 16 21 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.09 -1.27 0.80 -152.68 -0.12 -1.39 16 26 C -0.13 -1.88 8.15 37.15 0.30 -1.58 16 27 C -0.13 -1.44 8.44 37.16 0.31 -1.12 16 28 C 0.12 1.84 6.04 -3.07 -0.02 1.82 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.13 0.78 7.44 -51.93 -0.39 0.40 16 34 H 0.43 5.19 8.09 -34.47 -0.28 4.91 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.36 7.05 -51.93 -0.37 1.00 16 37 H 0.08 1.13 7.53 -51.93 -0.39 0.74 16 38 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 39 H 0.08 1.31 6.60 -51.93 -0.34 0.97 16 40 H 0.39 9.31 6.32 -40.82 -0.26 9.05 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.31 6.34 -51.93 -0.33 0.98 16 45 H 0.05 0.54 7.44 -51.93 -0.39 0.15 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 49 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 401.34 15.07 6.05 6.05 Total: -1.00 -33.18 401.34 -8.91 -42.09 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -8.06 Total: 12.33 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.75 Total: -2.35 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.11 Total: -63.92 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.94 Total: -38.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 28.46 SS G_CDS: -0.58 Total: 27.88 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.18 -8.91 -42.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755758674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.538 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds